Gchil4348.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4348.t1
Unique Name	Gchil4348.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2185027..2186112 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0233589
PFAMs	SNARE,Syntaxin
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K04560,ko:K08486
KEGG Pathway	ko04130,ko04721,ko04911,ko05031,map04130,map04721,map04911,map05031
Evalue	1.81e-14
EggNOG OGs	COG5074@1\|root,KOG0810@2759\|Eukaryota,3X8X7@554915\|Amoebozoa
Description	Belongs to the syntaxin family
COG category	U
BRITE	ko00000,ko00001,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4348	Gchil4348	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2185027..2186112 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4348.t1.start1	Gchil4348.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2185027..2185029 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4348.t1.CDS1	Gchil4348.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2185027..2186112 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4348.t1.exon1	Gchil4348.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2185027..2186112 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4348.t1.stop1	Gchil4348.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2186110..2186112 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4348.t1	Gchil4348.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2185027..2186112 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2185027..2186112+
coding sequence from alignment at tig00004373_pilon:2185027..2186112+

mRNA sequence

>Gchil4348.t1 ID=Gchil4348.t1|Name=Gchil4348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=362bp
MTDRLGELRPSAVSDAAAAAAAAAADDDDEDIETGLDAAADAKLAAFNRK
ADAIEKVFVWADRSIRTITNDLSDPDALPSLTAQLDTIDNKLDAVRKHLG
RIADENTRIAAEPHAAPATLRHRVNRFTKLSRHFMQLTAQMEAVRERHRH
VLTDGVKRDIVAANPHATDRQVERALQHGDLHAVLHHQHDAQLHHQIDDL
RARNNDIQKLSTNIVQLHKMFTDMSLLVDNQQELINGIEYNVKEVHQTTK
KAADELLIARNHQKAARKKKACCIISVIVILLAIAAGIIIWQGLKNNWFG
GGGGGDNNNNNNDNSNNNIVESGNATARAIHYASASFVRADELRPTHARA
NARRLRTRWYD*

spliced messenger RNA

>Gchil4348.t1 ID=Gchil4348.t1|Name=Gchil4348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00004373_pilon:2185027..2186112+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGACCGCCTCGGCGAGCTGCGGCCGTCCGCCGTGTCCGAcgccgc
cgccgccgccgccgccgccgccgccgACGACGACGACGAAGACATCGAAA
CAGGCCTCGATGCCGCCGCAGACGCCAAGCTGGCCGCCTTCAACCGCAAG
GCAGATGCCATCGAAAAGGTTTTCGTCTGGGCCGACCGCTCCATCCGCAC
CATCACAAACGACCTATCCGACCCGGACGCGCTTCCGTCGCTCACAGCAC
AGCTAGACACCATCGACAACAAGCTAGACGCCGTGCGCAAGCATCTTGGT
CGCATTGCCGACGAAAACACTCGCATAGCCGCCGAGCCGCATGCTGCGCC
CGCCACGCTGCGTCACCGAGTGAACCGCTTCACAAAGCTCAGTCGCCATT
TCATGCAGCTGACCGCCCAGATGGAGGCTGTGCGCGAGCGTCATCGCCAC
GTGCTCACCGACGGCGTCAAGCGCGATATTGTGGCTGCCAATCCGCACGC
TACCGACCGTCAGGTGGAGCGCGCGTTGCAGCACGGTGACCTACACGCCG
TGCTGCACCACCAGCACGACGCGCAGCTGCACCATCAGATTGACGACCTG
CGCGCGCGCAACAACGACATTCAAAAGCTATCGACCAACATTGTGCAGTT
GCACAAAATGTTCACGGACATGAGCCTGTTGGTGGACAACCAGCAGGAAC
TCATCAACGGCATCGAGTACAACGTGAAGGAGGTGCACCAAACCACCAAG
AAGGCGGCCGACGAACTGCTCATTGCGCGCAACCACCAGAAGGCGGCGCG
CAAGAAGAAGGCGTGTTGCATCATCAGCGTCATTGTGATTTTGCTCGCCA
TTGCCGCCGGAATCATCATCTGGCAAGGGCTCAAGAACAACTGGTTTggc
ggcggcggcggcggcgacaacaacaacaacaacaacgacaacagcaacaa
caacaTTGTGGAAAGTGGCAACGCCACGGCGAGAGCGATTCACTACGCGT
CGGCGTCATTTGTGCGCGCAGACGAGTTGCGCCCAACGCACGCACGTGCC
AACGCGCGCCGCCTCAGGACGCGGTGGTACGACTAA

protein sequence of Gchil4348.t1

>Gchil4348.t1 ID=Gchil4348.t1|Name=Gchil4348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=362bp
MTDRLGELRPSAVSDAAAAAAAAAADDDDEDIETGLDAAADAKLAAFNRK
ADAIEKVFVWADRSIRTITNDLSDPDALPSLTAQLDTIDNKLDAVRKHLG
RIADENTRIAAEPHAAPATLRHRVNRFTKLSRHFMQLTAQMEAVRERHRH
VLTDGVKRDIVAANPHATDRQVERALQHGDLHAVLHHQHDAQLHHQIDDL
RARNNDIQKLSTNIVQLHKMFTDMSLLVDNQQELINGIEYNVKEVHQTTK
KAADELLIARNHQKAARKKKACCIISVIVILLAIAAGIIIWQGLKNNWFG
GGGGGDNNNNNNDNSNNNIVESGNATARAIHYASASFVRADELRPTHARA
NARRLRTRWYD*

mRNA from alignment at tig00004373_pilon:2185027..2186112+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4348.t1 ID=Gchil4348.t1|Name=Gchil4348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00004373_pilon:2185027..2186112+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGACCGCCTCGGCGAGCTGCGGCCGTCCGCCGTGTCCGAcgccgc
cgccgccgccgccgccgccgccgccgACGACGACGACGAAGACATCGAAA
CAGGCCTCGATGCCGCCGCAGACGCCAAGCTGGCCGCCTTCAACCGCAAG
GCAGATGCCATCGAAAAGGTTTTCGTCTGGGCCGACCGCTCCATCCGCAC
CATCACAAACGACCTATCCGACCCGGACGCGCTTCCGTCGCTCACAGCAC
AGCTAGACACCATCGACAACAAGCTAGACGCCGTGCGCAAGCATCTTGGT
CGCATTGCCGACGAAAACACTCGCATAGCCGCCGAGCCGCATGCTGCGCC
CGCCACGCTGCGTCACCGAGTGAACCGCTTCACAAAGCTCAGTCGCCATT
TCATGCAGCTGACCGCCCAGATGGAGGCTGTGCGCGAGCGTCATCGCCAC
GTGCTCACCGACGGCGTCAAGCGCGATATTGTGGCTGCCAATCCGCACGC
TACCGACCGTCAGGTGGAGCGCGCGTTGCAGCACGGTGACCTACACGCCG
TGCTGCACCACCAGCACGACGCGCAGCTGCACCATCAGATTGACGACCTG
CGCGCGCGCAACAACGACATTCAAAAGCTATCGACCAACATTGTGCAGTT
GCACAAAATGTTCACGGACATGAGCCTGTTGGTGGACAACCAGCAGGAAC
TCATCAACGGCATCGAGTACAACGTGAAGGAGGTGCACCAAACCACCAAG
AAGGCGGCCGACGAACTGCTCATTGCGCGCAACCACCAGAAGGCGGCGCG
CAAGAAGAAGGCGTGTTGCATCATCAGCGTCATTGTGATTTTGCTCGCCA
TTGCCGCCGGAATCATCATCTGGCAAGGGCTCAAGAACAACTGGTTTggc
ggcggcggcggcggcgacaacaacaacaacaacaacgacaacagcaacaa
caacaTTGTGGAAAGTGGCAACGCCACGGCGAGAGCGATTCACTACGCGT
CGGCGTCATTTGTGCGCGCAGACGAGTTGCGCCCAACGCACGCACGTGCC
AACGCGCGCCGCCTCAGGACGCGGTGGTACGACTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:2185027..2186112+

>Gchil4348.t1 ID=Gchil4348.t1|Name=Gchil4348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00004373_pilon:2185027..2186112+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGACCGCCTCGGCGAGCTGCGGCCGTCCGCCGTGTCCGAcgccgc
cgccgccgccgccgccgccgccgccgACGACGACGACGAAGACATCGAAA
CAGGCCTCGATGCCGCCGCAGACGCCAAGCTGGCCGCCTTCAACCGCAAG
GCAGATGCCATCGAAAAGGTTTTCGTCTGGGCCGACCGCTCCATCCGCAC
CATCACAAACGACCTATCCGACCCGGACGCGCTTCCGTCGCTCACAGCAC
AGCTAGACACCATCGACAACAAGCTAGACGCCGTGCGCAAGCATCTTGGT
CGCATTGCCGACGAAAACACTCGCATAGCCGCCGAGCCGCATGCTGCGCC
CGCCACGCTGCGTCACCGAGTGAACCGCTTCACAAAGCTCAGTCGCCATT
TCATGCAGCTGACCGCCCAGATGGAGGCTGTGCGCGAGCGTCATCGCCAC
GTGCTCACCGACGGCGTCAAGCGCGATATTGTGGCTGCCAATCCGCACGC
TACCGACCGTCAGGTGGAGCGCGCGTTGCAGCACGGTGACCTACACGCCG
TGCTGCACCACCAGCACGACGCGCAGCTGCACCATCAGATTGACGACCTG
CGCGCGCGCAACAACGACATTCAAAAGCTATCGACCAACATTGTGCAGTT
GCACAAAATGTTCACGGACATGAGCCTGTTGGTGGACAACCAGCAGGAAC
TCATCAACGGCATCGAGTACAACGTGAAGGAGGTGCACCAAACCACCAAG
AAGGCGGCCGACGAACTGCTCATTGCGCGCAACCACCAGAAGGCGGCGCG
CAAGAAGAAGGCGTGTTGCATCATCAGCGTCATTGTGATTTTGCTCGCCA
TTGCCGCCGGAATCATCATCTGGCAAGGGCTCAAGAACAACTGGTTTggc
ggcggcggcggcggcgacaacaacaacaacaacaacgacaacagcaacaa
caacaTTGTGGAAAGTGGCAACGCCACGGCGAGAGCGATTCACTACGCGT
CGGCGTCATTTGTGCGCGCAGACGAGTTGCGCCCAACGCACGCACGTGCC
AACGCGCGCCGCCTCAGGACGCGGTGGTACGACTAA