Gchil4341.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4341.t1
Unique NameGchil4341.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length665
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2147691..2149802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000685
PFAMsrve
Max annot lvl33208|Metazoa
Evalue7.47e-37
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3ADCI@33154|Opisthokonta,3CNH4@33208|Metazoa,3E4MW@33213|Bilateria
DescriptionIntegrase core domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4341Gchil4341Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2147691..2149802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4341.t1Gchil4341.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2147691..2149802 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4341.t1.stop1Gchil4341.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2147691..2147693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4341.t1.CDS1Gchil4341.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2147691..2148714 -
Gchil4341.t1.CDS2Gchil4341.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2148832..2149802 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4341.t1.exon1Gchil4341.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2147691..2148714 -
Gchil4341.t1.exon2Gchil4341.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2148832..2149802 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4341.t1.intron1Gchil4341.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 2148715..2148831 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4341.t1.start1Gchil4341.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2149800..2149802 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4341.t1 ID=Gchil4341.t1|Name=Gchil4341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=665bp
MRWRLRLSEFDFEILYKKGKLNTQADALSRLGTTAETEPYEDDDIPCFMV
SDLEGGAQPLTDDVCDDILVNESLDSPTGSFIPISPEEMLREQQLDPFCT
RIRACLNGGFQLPFEDDDQGYLIRTVGPRPRIVVPHALQQRVLHLTHCVK
VGAHPGGRKLYLTLRRDFYWPAMAFDCYAVRRACANCAKNDVKLRKHFKK
LTLFPARAPLEFVAIDILVEFIRTPRGYRYLLVISDRFSKLTRTVPLKRI
TAATVAQAFVTHWVFVYGPPVQLLSDNGGQFASKFFQDVCRTLDVRNVFV
TTYHPQGNGQVERFNRTILNALRSTPPPVAIEAQPTLSTYPSPGLYREAW
KEWLTKMVPIARKAMDKAQRAYKKDFDNRVRKPLPLVEPDDFVFLRKEYY
NPEKERRHKLSPIVDGPYRVVSVDPDTVVLDIANRHERISRDRITRAPNP
NVEVVSAPTPSTGDDSTEVNPSSGDSNTRPVIIPHPERGLTDLPETSDTP
EPGPAPSRAQSTNSYRVNPPPEVIKPPGSPPKEGEENLVPSQDVVSASAS
HPNRESSSHSETASPTEPATEKSEPQRMGSDITADPAEHDVRKDDETPPR
ESRVENSAPGTPTEPTITRRRGRDTEVSHTQTPLSRERAVPADPHGEDLD
DEVDQIWLSVMEWE*
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spliced messenger RNA

>Gchil4341.t1 ID=Gchil4341.t1|Name=Gchil4341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at tig00004373_pilon:2147691..2149802- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGGCGTCTCCGACTGTCCGAATTCGACTTTGAGATCCTGTACAA
GAAAGGGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCA
CAGCGGAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTA
TCGGACCTCGAGGGAGGAGCTCAACCCCTGACGGATGATGTTTGTGACGA
TATACTCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCTA
TCTCTCCAGAGGAGATGCTACGCGAGCAACAGCTCGACCCATTCTGTACA
CGGATTCGGGCTTGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGA
CGATCAGGGTTACTTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGG
TGCCGCACGCCCTACAACAGAGGGTATTACATCTCACTCACTGTGTGAAG
GTTGGCGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGAGAAGGGA
CTTTTACTGGCCGGCAATGGCATTCGATTGTTACGCCGTCAGACGGGCCT
GCGCCAATTGCGCCAAGAATGACGTCAAACTTCGGAAGCACTTTAAGAAG
TTGACGCTGTTCCCGGCACGGGCTCCACTCGAATTCGTGGCCATAGACAT
CCTAGTGGAGTTTATCAGGACGCCCCGAGGTTATCGGTATCTGCTTGTCA
TTTCTGACAGATTCTCTAAGCTAACGAGAACTGTGCCGCTGAAGCGGATC
ACCGCCGCCACCGTCGCGCAAGCGTTCGTGACCCATTGGGTGTTCGTATA
TGGACCGCCGGTGCAGTTGTTATCCGACAACGGAGGGCAATTCGCATCAA
AGTTCTTTCAGGATGTATGTCGAACCCTTGATGTAAGGAATGTATTTGTT
ACTACGTATCACCCTCAGGGGAATGGCCAGGTGGAGAGGTTTAACCGCAC
GATACTCAACGCTTTGAGATCGACACCGCCGCCGGTCGCCATCGAGGCTC
AACCGACGCTGTCGACGTACCCGTCACCGGGACTGTACCGAGAAGCCTGG
AAGGAGTGGCTTACGAAGATGGTGCCGATAGCCCGGAAAGCAATGGACAA
AGCTCAACGCGCCTACAAGAAAGACTTTGACAATCGGGTTCGCAAACCTC
TACCTCTGGTGGAGCCCGACGACTTCGTCTTTCTTCGAAAGGAATACTAC
AATCCTGAAAAGGAACGTAGGCACAAGCTTTCGCCAATTGTGGACGGACC
CTATCGTGTGGTTTCTGTAGACCCGGACACGGTGGTATTGGATATCGCTA
ACCGCCACGAACGGATCTCCAGGGACCGCATCACACGAGCGCCCAACCCA
AATGTGGAAGTGGTGTCGGCACCAACGCCCTCCACAGGGGATGATTCAAC
GGAAGTTAACCCGTCAAGCGGAGATTCGAACACCCGCCCCGTTATAATTC
CGCACCCGGAACGTGGTTTAACCGACCTACCGGAAACTTCGGATACTCCC
GAACCTGGGCCCGCTCCCTCAAGAGCCCAGTCAACGAACTCTTACAGAGT
TAATCCCCCACCGGAGGTAATCAAGCCTCCTGGCTCTCCGCCTAAGGAGG
GGGAGGAAAACTTAGTTCCTTCGCAGGACGTTGTTTCGGCGTCAGCCAGT
CACCCTAACAGGGAATCTAGTTCTCACAGTGAGACGGCGAGCCCGACCGA
GCCGGCGACAGAGAAGTCAGAACCCCAGCGTATGGGTAGCGACATCACCG
CCGACCCAGCCGAGCACGACGTCAGAAAAGATGACGAAACCCCGCCTAGG
GAGAGTCGTGTGGAGAACTCCGCACCTGGAACGCCTACAGAGCCCACGAT
CACCCGCCGCCGCGGACGAGACACTGAGGTGTCGCACACTCAAACCCCGC
TTTCTCGGGAACGAGCTGTGCCAGCGGACCCGCACGGGGAAGATCTCGAC
GACGAGGTTGACCAAATTTGGCTCTCCGTTATGGAATGGGAATAG
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protein sequence of Gchil4341.t1

>Gchil4341.t1 ID=Gchil4341.t1|Name=Gchil4341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=665bp
MRWRLRLSEFDFEILYKKGKLNTQADALSRLGTTAETEPYEDDDIPCFMV
SDLEGGAQPLTDDVCDDILVNESLDSPTGSFIPISPEEMLREQQLDPFCT
RIRACLNGGFQLPFEDDDQGYLIRTVGPRPRIVVPHALQQRVLHLTHCVK
VGAHPGGRKLYLTLRRDFYWPAMAFDCYAVRRACANCAKNDVKLRKHFKK
LTLFPARAPLEFVAIDILVEFIRTPRGYRYLLVISDRFSKLTRTVPLKRI
TAATVAQAFVTHWVFVYGPPVQLLSDNGGQFASKFFQDVCRTLDVRNVFV
TTYHPQGNGQVERFNRTILNALRSTPPPVAIEAQPTLSTYPSPGLYREAW
KEWLTKMVPIARKAMDKAQRAYKKDFDNRVRKPLPLVEPDDFVFLRKEYY
NPEKERRHKLSPIVDGPYRVVSVDPDTVVLDIANRHERISRDRITRAPNP
NVEVVSAPTPSTGDDSTEVNPSSGDSNTRPVIIPHPERGLTDLPETSDTP
EPGPAPSRAQSTNSYRVNPPPEVIKPPGSPPKEGEENLVPSQDVVSASAS
HPNRESSSHSETASPTEPATEKSEPQRMGSDITADPAEHDVRKDDETPPR
ESRVENSAPGTPTEPTITRRRGRDTEVSHTQTPLSRERAVPADPHGEDLD
DEVDQIWLSVMEWE*
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mRNA from alignment at tig00004373_pilon:2147691..2149802-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4341.t1 ID=Gchil4341.t1|Name=Gchil4341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004373_pilon:2147691..2149802- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTGGCGTCTCCGACTGTCCGAATTCGACTTTGAGATCCTGTACAA
GAAAGGGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCA
CAGCGGAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTA
TCGGACCTCGAGGGAGGAGCTCAACCCCTGACGGATGATGTTTGTGACGA
TATACTCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCTA
TCTCTCCAGAGGAGATGCTACGCGAGCAACAGCTCGACCCATTCTGTACA
CGGATTCGGGCTTGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGA
CGATCAGGGTTACTTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGG
TGCCGCACGCCCTACAACAGAGGGTATTACATCTCACTCACTGTGTGAAG
GTTGGCGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGAGAAGGGA
CTTTTACTGGCCGGCAATGGCATTCGATTGTTACGCCGTCAGACGGGCCT
GCGCCAATTGCGCCAAGAATGACGTCAAACTTCGGAAGCACTTTAAGAAG
TTGACGCTGTTCCCGGCACGGGCTCCACTCGAATTCGTGGCCATAGACAT
CCTAGTGGAGTTTATCAGGACGCCCCGAGGTTATCGGTATCTGCTTGTCA
TTTCTGACAGATTCTCTAAGCTAACGAGAACTGTGCCGCTGAAGCGGATC
ACCGCCGCCACCGTCGCGCAAGCGTTCGTGACCCATTGGGTGTTCGTATA
TGGACCGCCGGTGCAGTTGTTATCCGACAACGGAGGGCAATTCGCATCAA
AGTTCTTTCAGGATGTATGTCGAACCCTTGATGTAAGGAATGTATTTGTT
ACTACGTATCACCCTCAGGGGAATGGCCAGGTGGAGAGGTTTAACCGCAC
GATACTCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGG
ACTTGTACACAGACGCTATCACGTATGCATAGAACACCCAGGTACATCGG
GTTACATCGATATCCCCATTCGAACTGGTACTGTCGAGGACACCGCCGCC
GGTCGCCATCGAGGCTCAACCGACGCTGTCGACGTACCCGTCACCGGGAC
TGTACCGAGAAGCCTGGAAGGAGTGGCTTACGAAGATGGTGCCGATAGCC
CGGAAAGCAATGGACAAAGCTCAACGCGCCTACAAGAAAGACTTTGACAA
TCGGGTTCGCAAACCTCTACCTCTGGTGGAGCCCGACGACTTCGTCTTTC
TTCGAAAGGAATACTACAATCCTGAAAAGGAACGTAGGCACAAGCTTTCG
CCAATTGTGGACGGACCCTATCGTGTGGTTTCTGTAGACCCGGACACGGT
GGTATTGGATATCGCTAACCGCCACGAACGGATCTCCAGGGACCGCATCA
CACGAGCGCCCAACCCAAATGTGGAAGTGGTGTCGGCACCAACGCCCTCC
ACAGGGGATGATTCAACGGAAGTTAACCCGTCAAGCGGAGATTCGAACAC
CCGCCCCGTTATAATTCCGCACCCGGAACGTGGTTTAACCGACCTACCGG
AAACTTCGGATACTCCCGAACCTGGGCCCGCTCCCTCAAGAGCCCAGTCA
ACGAACTCTTACAGAGTTAATCCCCCACCGGAGGTAATCAAGCCTCCTGG
CTCTCCGCCTAAGGAGGGGGAGGAAAACTTAGTTCCTTCGCAGGACGTTG
TTTCGGCGTCAGCCAGTCACCCTAACAGGGAATCTAGTTCTCACAGTGAG
ACGGCGAGCCCGACCGAGCCGGCGACAGAGAAGTCAGAACCCCAGCGTAT
GGGTAGCGACATCACCGCCGACCCAGCCGAGCACGACGTCAGAAAAGATG
ACGAAACCCCGCCTAGGGAGAGTCGTGTGGAGAACTCCGCACCTGGAACG
CCTACAGAGCCCACGATCACCCGCCGCCGCGGACGAGACACTGAGGTGTC
GCACACTCAAACCCCGCTTTCTCGGGAACGAGCTGTGCCAGCGGACCCGC
ACGGGGAAGATCTCGACGACGAGGTTGACCAAATTTGGCTCTCCGTTATG
GAATGGGAATAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:2147691..2149802-

>Gchil4341.t1 ID=Gchil4341.t1|Name=Gchil4341.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1995bp|location=Sequence derived from alignment at tig00004373_pilon:2147691..2149802- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTGGCGTCTCCGACTGTCCGAATTCGACTTTGAGATCCTGTACAA
GAAAGGGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCA
CAGCGGAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTA
TCGGACCTCGAGGGAGGAGCTCAACCCCTGACGGATGATGTTTGTGACGA
TATACTCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCTA
TCTCTCCAGAGGAGATGCTACGCGAGCAACAGCTCGACCCATTCTGTACA
CGGATTCGGGCTTGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGA
CGATCAGGGTTACTTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGG
TGCCGCACGCCCTACAACAGAGGGTATTACATCTCACTCACTGTGTGAAG
GTTGGCGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGAGAAGGGA
CTTTTACTGGCCGGCAATGGCATTCGATTGTTACGCCGTCAGACGGGCCT
GCGCCAATTGCGCCAAGAATGACGTCAAACTTCGGAAGCACTTTAAGAAG
TTGACGCTGTTCCCGGCACGGGCTCCACTCGAATTCGTGGCCATAGACAT
CCTAGTGGAGTTTATCAGGACGCCCCGAGGTTATCGGTATCTGCTTGTCA
TTTCTGACAGATTCTCTAAGCTAACGAGAACTGTGCCGCTGAAGCGGATC
ACCGCCGCCACCGTCGCGCAAGCGTTCGTGACCCATTGGGTGTTCGTATA
TGGACCGCCGGTGCAGTTGTTATCCGACAACGGAGGGCAATTCGCATCAA
AGTTCTTTCAGGATGTATGTCGAACCCTTGATGTAAGGAATGTATTTGTT
ACTACGTATCACCCTCAGGGGAATGGCCAGGTGGAGAGGTTTAACCGCAC
GATACTCAACGCTTTGAGATCGACACCGCCGCCGGTCGCCATCGAGGCTC
AACCGACGCTGTCGACGTACCCGTCACCGGGACTGTACCGAGAAGCCTGG
AAGGAGTGGCTTACGAAGATGGTGCCGATAGCCCGGAAAGCAATGGACAA
AGCTCAACGCGCCTACAAGAAAGACTTTGACAATCGGGTTCGCAAACCTC
TACCTCTGGTGGAGCCCGACGACTTCGTCTTTCTTCGAAAGGAATACTAC
AATCCTGAAAAGGAACGTAGGCACAAGCTTTCGCCAATTGTGGACGGACC
CTATCGTGTGGTTTCTGTAGACCCGGACACGGTGGTATTGGATATCGCTA
ACCGCCACGAACGGATCTCCAGGGACCGCATCACACGAGCGCCCAACCCA
AATGTGGAAGTGGTGTCGGCACCAACGCCCTCCACAGGGGATGATTCAAC
GGAAGTTAACCCGTCAAGCGGAGATTCGAACACCCGCCCCGTTATAATTC
CGCACCCGGAACGTGGTTTAACCGACCTACCGGAAACTTCGGATACTCCC
GAACCTGGGCCCGCTCCCTCAAGAGCCCAGTCAACGAACTCTTACAGAGT
TAATCCCCCACCGGAGGTAATCAAGCCTCCTGGCTCTCCGCCTAAGGAGG
GGGAGGAAAACTTAGTTCCTTCGCAGGACGTTGTTTCGGCGTCAGCCAGT
CACCCTAACAGGGAATCTAGTTCTCACAGTGAGACGGCGAGCCCGACCGA
GCCGGCGACAGAGAAGTCAGAACCCCAGCGTATGGGTAGCGACATCACCG
CCGACCCAGCCGAGCACGACGTCAGAAAAGATGACGAAACCCCGCCTAGG
GAGAGTCGTGTGGAGAACTCCGCACCTGGAACGCCTACAGAGCCCACGAT
CACCCGCCGCCGCGGACGAGACACTGAGGTGTCGCACACTCAAACCCCGC
TTTCTCGGGAACGAGCTGTGCCAGCGGACCCGCACGGGGAAGATCTCGAC
GACGAGGTTGACCAAATTTGGCTCTCCGTTATGGAATGGGAATAG
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