Gchil4338.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4338.t1
Unique NameGchil4338.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2138987..2139910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002507819.1
PFAMsFructosamin_kin
Max annot lvl3041|Chlorophyta
KEGG koko:K15523
Evalue4.07e-93
EggNOG OGsCOG3001@1|root,KOG3021@2759|Eukaryota,37MIU@33090|Viridiplantae,34HD1@3041|Chlorophyta
EC2.7.1.172
DescriptionFructosamine kinase
COG categoryG
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4338Gchil4338Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2138987..2139910 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4338.t1.stop1Gchil4338.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2138987..2138989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4338.t1.CDS1Gchil4338.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2138987..2139910 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4338.t1.exon1Gchil4338.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2138987..2139910 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4338.t1.start1Gchil4338.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2139908..2139910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4338.t1Gchil4338.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2138987..2139910 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4338.t1 ID=Gchil4338.t1|Name=Gchil4338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp
MRGRSRAVATIATDELSKVITDKLQFGNVTSMTRAGSSGWAVMHLITTDK
GKRLFAKVSREDVEMFAGEKESLSAMFNTRTIRVPEAYDCGSLKSIQGSF
IIMEALDFFSIYDQARLGDKLARMHLAEPTVVEAKEGKFGFTSDNTIGPT
PQPNGWMDDWIEFFRERRLRHQLMLTNDSNLIRKGNELCSRVDELFEDVK
GTIKPSILHGDLWSGNVNGIGETREPVIYDPASYYGHHEAEFGMSWCMEL
TSVFWENYRKHIPEAQGFKRRLKLYQLYHYLNHFNIFGGSYYDMSEILID
QLLKGID*
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spliced messenger RNA

>Gchil4338.t1 ID=Gchil4338.t1|Name=Gchil4338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00004373_pilon:2138987..2139910- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGACGTTCGCGTGCTGTGGCAACCATCGCTACGGACGAATTGAG
CAAGGTAATAACTGACAAACTGCAATTTGGAAACGTCACATCCATGACAC
GAGCGGGATCATCCGGCTGGGCTGTTATGCATTTGATAACCACCGACAAG
GGAAAGCGACTGTTTGCAAAGGTAAGTCGAGAGGATGTGGAAATGTTTGC
TGGTGAAAAGGAAAGCCTTTCTGCAATGTTCAACACGCGCACAATCCGGG
TGCCGGAAGCGTACGACTGCGGTAGTCTGAAGAGTATTCAAGGCTCATTC
ATCATCATGGAGGCTTTGGACTTTTTCTCTATCTATGACCAAGCTCGTCT
TGGAGATAAATTGGCAAGAATGCACCTTGCAGAACCTACCGTTGTTGAAG
CGAAGGAGGGGAAATTTGGCTTTACTTCGGACAATACAATTGGCCCAACC
CCGCAGCCGAACGGATGGATGGACGATTGGATTGAATTCTTCCGTGAAAG
GCGTCTTCGACATCAGCTGATGCTCACCAATGATTCCAATTTGATAAGAA
AGGGCAATGAGCTGTGCTCACGAGTGGACGAATTATTTGAAGATGTTAAG
GGAACAATAAAACCAAGCATTCTGCACGGAGATTTATGGTCTGGCAACGT
TAATGGTATTGGTGAAACTCGCGAGCCCGTTATCTATGACCCCGCTTCGT
ATTACGGGCACCATGAGGCAGAGTTTGGAATGTCTTGGTGCATGGAACTA
ACCTCAGTGTTCTGGGAGAACTACCGAAAGCACATACCAGAAGCTCAAGG
ATTTAAGAGACGGCTCAAGCTGTATCAGTTATACCACTATTTGAACCATT
TCAATATATTTGGTGGTAGTTATTACGATATGTCGGAGATCCTCATCGAT
CAGCTCTTAAAGGGAATAGACTGA
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protein sequence of Gchil4338.t1

>Gchil4338.t1 ID=Gchil4338.t1|Name=Gchil4338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=308bp
MRGRSRAVATIATDELSKVITDKLQFGNVTSMTRAGSSGWAVMHLITTDK
GKRLFAKVSREDVEMFAGEKESLSAMFNTRTIRVPEAYDCGSLKSIQGSF
IIMEALDFFSIYDQARLGDKLARMHLAEPTVVEAKEGKFGFTSDNTIGPT
PQPNGWMDDWIEFFRERRLRHQLMLTNDSNLIRKGNELCSRVDELFEDVK
GTIKPSILHGDLWSGNVNGIGETREPVIYDPASYYGHHEAEFGMSWCMEL
TSVFWENYRKHIPEAQGFKRRLKLYQLYHYLNHFNIFGGSYYDMSEILID
QLLKGID*
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mRNA from alignment at tig00004373_pilon:2138987..2139910-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4338.t1 ID=Gchil4338.t1|Name=Gchil4338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00004373_pilon:2138987..2139910- (Gracilaria chilensis NLEC103_M9 male)
ATGCGAGGACGTTCGCGTGCTGTGGCAACCATCGCTACGGACGAATTGAG
CAAGGTAATAACTGACAAACTGCAATTTGGAAACGTCACATCCATGACAC
GAGCGGGATCATCCGGCTGGGCTGTTATGCATTTGATAACCACCGACAAG
GGAAAGCGACTGTTTGCAAAGGTAAGTCGAGAGGATGTGGAAATGTTTGC
TGGTGAAAAGGAAAGCCTTTCTGCAATGTTCAACACGCGCACAATCCGGG
TGCCGGAAGCGTACGACTGCGGTAGTCTGAAGAGTATTCAAGGCTCATTC
ATCATCATGGAGGCTTTGGACTTTTTCTCTATCTATGACCAAGCTCGTCT
TGGAGATAAATTGGCAAGAATGCACCTTGCAGAACCTACCGTTGTTGAAG
CGAAGGAGGGGAAATTTGGCTTTACTTCGGACAATACAATTGGCCCAACC
CCGCAGCCGAACGGATGGATGGACGATTGGATTGAATTCTTCCGTGAAAG
GCGTCTTCGACATCAGCTGATGCTCACCAATGATTCCAATTTGATAAGAA
AGGGCAATGAGCTGTGCTCACGAGTGGACGAATTATTTGAAGATGTTAAG
GGAACAATAAAACCAAGCATTCTGCACGGAGATTTATGGTCTGGCAACGT
TAATGGTATTGGTGAAACTCGCGAGCCCGTTATCTATGACCCCGCTTCGT
ATTACGGGCACCATGAGGCAGAGTTTGGAATGTCTTGGTGCATGGAACTA
ACCTCAGTGTTCTGGGAGAACTACCGAAAGCACATACCAGAAGCTCAAGG
ATTTAAGAGACGGCTCAAGCTGTATCAGTTATACCACTATTTGAACCATT
TCAATATATTTGGTGGTAGTTATTACGATATGTCGGAGATCCTCATCGAT
CAGCTCTTAAAGGGAATAGACTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2138987..2139910-

>Gchil4338.t1 ID=Gchil4338.t1|Name=Gchil4338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00004373_pilon:2138987..2139910- (Gracilaria chilensis NLEC103_M9 male)
ATGCGAGGACGTTCGCGTGCTGTGGCAACCATCGCTACGGACGAATTGAG
CAAGGTAATAACTGACAAACTGCAATTTGGAAACGTCACATCCATGACAC
GAGCGGGATCATCCGGCTGGGCTGTTATGCATTTGATAACCACCGACAAG
GGAAAGCGACTGTTTGCAAAGGTAAGTCGAGAGGATGTGGAAATGTTTGC
TGGTGAAAAGGAAAGCCTTTCTGCAATGTTCAACACGCGCACAATCCGGG
TGCCGGAAGCGTACGACTGCGGTAGTCTGAAGAGTATTCAAGGCTCATTC
ATCATCATGGAGGCTTTGGACTTTTTCTCTATCTATGACCAAGCTCGTCT
TGGAGATAAATTGGCAAGAATGCACCTTGCAGAACCTACCGTTGTTGAAG
CGAAGGAGGGGAAATTTGGCTTTACTTCGGACAATACAATTGGCCCAACC
CCGCAGCCGAACGGATGGATGGACGATTGGATTGAATTCTTCCGTGAAAG
GCGTCTTCGACATCAGCTGATGCTCACCAATGATTCCAATTTGATAAGAA
AGGGCAATGAGCTGTGCTCACGAGTGGACGAATTATTTGAAGATGTTAAG
GGAACAATAAAACCAAGCATTCTGCACGGAGATTTATGGTCTGGCAACGT
TAATGGTATTGGTGAAACTCGCGAGCCCGTTATCTATGACCCCGCTTCGT
ATTACGGGCACCATGAGGCAGAGTTTGGAATGTCTTGGTGCATGGAACTA
ACCTCAGTGTTCTGGGAGAACTACCGAAAGCACATACCAGAAGCTCAAGG
ATTTAAGAGACGGCTCAAGCTGTATCAGTTATACCACTATTTGAACCATT
TCAATATATTTGGTGGTAGTTATTACGATATGTCGGAGATCCTCATCGAT
CAGCTCTTAAAGGGAATAGACTGA
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