Gchil4330.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4330.t1
Unique NameGchil4330.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length602
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2119458..2121263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD12178
PFAMsEOS1,Galactosyl_T
Max annot lvl2759|Eukaryota
KEGG koko:K00734
KEGG ReactionR05927
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Evalue4.44e-11
EggNOG OGsKOG2288@1|root,KOG2288@2759|Eukaryota
EC2.4.1.134
Descriptiongalactosyltransferase activity
COG categoryM
CAZyGT31
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4330Gchil4330Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2119458..2121263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4330.t1.stop1Gchil4330.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2119458..2119460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4330.t1.CDS1Gchil4330.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2119458..2121263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4330.t1.exon1Gchil4330.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2119458..2121263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4330.t1.start1Gchil4330.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2121261..2121263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4330.t1Gchil4330.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2119458..2121263 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4330.t1 ID=Gchil4330.t1|Name=Gchil4330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=602bp
MKQRRISGRFYAPLLVSISLSILLTVVHRLEIIRLSSQSLAGPLVSSVTL
PWSRTHCKLLALVPVSPEDIQIGTIRTWFSTISSNYTSTVCCVAVIRSQS
SHPQLERNTDSCDVLHVPMVRPDDYLSLSEKVQLALIHAASYYDFDWLLK
TDSDSFVCFSRVFRLLGNFDSSGIVHVGHAESNNSLKYDPTHKWYDPGLT
DIVHNPRQLLEVGKVTHHPYMQGAGYIISRGAYNALQSVYRLLRYSPIED
IMVGGWLVAFTTHRASMVLNLWSTRRHCYLPSSTFIAHKRKGKARLERCI
ETNAHCLRAPKTDDVDVRKVAFVIEGDISNNTRQFMDLYESIRAAFPQNE
VVVGDTSISDSSMKRFLSSKSEDNVKVFWLFNTSRALVLNRLVDKTSSPF
ACILRMEQKISWETMIARMLRPVDRDEADITSGFLVFNHNRRDSEQGLFQ
NGFVIKQNKNNISFENVEESWNLGPETWESINGTSGFLLARTEFLKKTGW
KDYGPFTEAEFSIRLWRSNARVRLVKSGIRHGYHYAAYPPSETKSDVKKY
SAPFCKQIARVLRLKQVGRVSFSSATVECSKRWFRRKYNYRKRWLNSFVE
W*
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spliced messenger RNA

>Gchil4330.t1 ID=Gchil4330.t1|Name=Gchil4330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1806bp|location=Sequence derived from alignment at tig00004373_pilon:2119458..2121263- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAACGACGTATTTCAGGACGATTCTATGCTCCCTTACTTGTGTC
GATTTCATTATCAATATTGCTAACGGTGGTCCACCGGCTTGAAATCATTC
GCCTGTCTTCTCAATCCCTGGCTGGCCCACTAGTGTCCTCCGTAACATTA
CCATGGTCACGGACACATTGTAAACTCCTAGCTTTGGTCCCCGTATCACC
GGAGGACATTCAAATTGGTACGATTCGCACATGGTTTTCCACCATATCAT
CGAATTATACTTCTACTGTTTGTTGCGTGGCCGTAATTCGTTCCCAAAGC
TCCCATCCACAACTCGAACGTAATACCGACTCCTGCGATGTACTGCACGT
ACCGATGGTGCGTCCAGATGATTATCTTTCTCTTTCAGAGAAGGTTCAGT
TGGCTCTCATTCATGCCGCTTCTTACTATGACTTTGATTGGTTATTGAAG
ACCGATTCCGATTCATTTGTATGTTTTTCACGCGTATTTCGCTTGCTCGG
CAACTTTGACTCGAGTGGAATTGTTCATGTGGGACACGCAGAGTCAAATA
ACTCTTTGAAATATGATCCTACACACAAATGGTACGATCCTGGTTTGACC
GATATTGTACATAACCCCCGACAGCTTCTCGAAGTAGGAAAAGTCACGCA
TCATCCGTATATGCAAGGAGCTGGTTATATAATATCACGCGGTGCGTATA
ATGCCTTGCAAAGTGTGTATAGGCTACTGAGATATAGTCCAATCGAAGAC
ATCATGGTGGGGGGTTGGTTGGTGGCTTTTACTACGCATCGAGCGTCAAT
GGTTTTGAATCTGTGGTCGACTCGTCGTCATTGTTACTTGCCCTCCTCTA
CTTTTATTGCCCATAAGCGGAAAGGCAAGGCAAGATTAGAAAGATGTATC
GAAACGAATGCCCACTGCCTTCGAGCGCCCAAAACAGACGATGTCGACGT
GCGAAAAGTTGCTTTCGTGATCGAGGGAGATATTTCAAATAACACAAGGC
AGTTCATGGATCTTTATGAAAGCATCCGTGCGGCATTTCCACAAAATGAG
GTCGTTGTCGGCGACACATCCATTTCAGATTCGTCAATGAAGAGATTCTT
GTCTTCGAAGAGTGAGGACAATGTGAAAGTGTTTTGGCTATTCAATACTT
CGAGAGCTCTGGTGTTGAATCGATTGGTTGACAAAACGAGCTCGCCATTT
GCATGCATTCTTCGTATGGAGCAGAAGATTTCGTGGGAAACAATGATAGC
GCGAATGTTGCGGCCTGTGGATCGTGATGAAGCAGACATAACATCCGGGT
TTCTTGTCTTCAATCACAATCGACGAGATTCAGAACAAGGTTTATTTCAA
AATGGATTTGTTATAAAACAGAATAAAAACAACATATCATTTGAGAATGT
AGAAGAATCATGGAATCTTGGACCAGAAACTTGGGAAAGTATAAACGGAA
CTAGTGGGTTTTTATTAGCACGAACGGAGTTCTTGAAGAAAACTGGGTGG
AAAGACTACGGTCCCTTCACTGAGGCGGAATTTTCTATTCGATTGTGGCG
CTCAAACGCACGGGTGAGACTTGTGAAAAGTGGCATTCGCCACGGATATC
ACTACGCGGCTTATCCACCGTCAGAGACTAAATCAGACGTGAAGAAGTAT
TCAGCTCCGTTTTGTAAACAAATTGCTCGTGTACTGAGGCTAAAACAAGT
AGGTCGTGTGTCTTTTTCCAGCGCGACAGTTGAGTGTTCCAAACGATGGT
TTAGGAGGAAGTACAATTATCGGAAGAGATGGCTGAATTCTTTTGTTGAG
TGGTAA
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protein sequence of Gchil4330.t1

>Gchil4330.t1 ID=Gchil4330.t1|Name=Gchil4330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=602bp
MKQRRISGRFYAPLLVSISLSILLTVVHRLEIIRLSSQSLAGPLVSSVTL
PWSRTHCKLLALVPVSPEDIQIGTIRTWFSTISSNYTSTVCCVAVIRSQS
SHPQLERNTDSCDVLHVPMVRPDDYLSLSEKVQLALIHAASYYDFDWLLK
TDSDSFVCFSRVFRLLGNFDSSGIVHVGHAESNNSLKYDPTHKWYDPGLT
DIVHNPRQLLEVGKVTHHPYMQGAGYIISRGAYNALQSVYRLLRYSPIED
IMVGGWLVAFTTHRASMVLNLWSTRRHCYLPSSTFIAHKRKGKARLERCI
ETNAHCLRAPKTDDVDVRKVAFVIEGDISNNTRQFMDLYESIRAAFPQNE
VVVGDTSISDSSMKRFLSSKSEDNVKVFWLFNTSRALVLNRLVDKTSSPF
ACILRMEQKISWETMIARMLRPVDRDEADITSGFLVFNHNRRDSEQGLFQ
NGFVIKQNKNNISFENVEESWNLGPETWESINGTSGFLLARTEFLKKTGW
KDYGPFTEAEFSIRLWRSNARVRLVKSGIRHGYHYAAYPPSETKSDVKKY
SAPFCKQIARVLRLKQVGRVSFSSATVECSKRWFRRKYNYRKRWLNSFVE
W*
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mRNA from alignment at tig00004373_pilon:2119458..2121263-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4330.t1 ID=Gchil4330.t1|Name=Gchil4330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1806bp|location=Sequence derived from alignment at tig00004373_pilon:2119458..2121263- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCAACGACGTATTTCAGGACGATTCTATGCTCCCTTACTTGTGTC
GATTTCATTATCAATATTGCTAACGGTGGTCCACCGGCTTGAAATCATTC
GCCTGTCTTCTCAATCCCTGGCTGGCCCACTAGTGTCCTCCGTAACATTA
CCATGGTCACGGACACATTGTAAACTCCTAGCTTTGGTCCCCGTATCACC
GGAGGACATTCAAATTGGTACGATTCGCACATGGTTTTCCACCATATCAT
CGAATTATACTTCTACTGTTTGTTGCGTGGCCGTAATTCGTTCCCAAAGC
TCCCATCCACAACTCGAACGTAATACCGACTCCTGCGATGTACTGCACGT
ACCGATGGTGCGTCCAGATGATTATCTTTCTCTTTCAGAGAAGGTTCAGT
TGGCTCTCATTCATGCCGCTTCTTACTATGACTTTGATTGGTTATTGAAG
ACCGATTCCGATTCATTTGTATGTTTTTCACGCGTATTTCGCTTGCTCGG
CAACTTTGACTCGAGTGGAATTGTTCATGTGGGACACGCAGAGTCAAATA
ACTCTTTGAAATATGATCCTACACACAAATGGTACGATCCTGGTTTGACC
GATATTGTACATAACCCCCGACAGCTTCTCGAAGTAGGAAAAGTCACGCA
TCATCCGTATATGCAAGGAGCTGGTTATATAATATCACGCGGTGCGTATA
ATGCCTTGCAAAGTGTGTATAGGCTACTGAGATATAGTCCAATCGAAGAC
ATCATGGTGGGGGGTTGGTTGGTGGCTTTTACTACGCATCGAGCGTCAAT
GGTTTTGAATCTGTGGTCGACTCGTCGTCATTGTTACTTGCCCTCCTCTA
CTTTTATTGCCCATAAGCGGAAAGGCAAGGCAAGATTAGAAAGATGTATC
GAAACGAATGCCCACTGCCTTCGAGCGCCCAAAACAGACGATGTCGACGT
GCGAAAAGTTGCTTTCGTGATCGAGGGAGATATTTCAAATAACACAAGGC
AGTTCATGGATCTTTATGAAAGCATCCGTGCGGCATTTCCACAAAATGAG
GTCGTTGTCGGCGACACATCCATTTCAGATTCGTCAATGAAGAGATTCTT
GTCTTCGAAGAGTGAGGACAATGTGAAAGTGTTTTGGCTATTCAATACTT
CGAGAGCTCTGGTGTTGAATCGATTGGTTGACAAAACGAGCTCGCCATTT
GCATGCATTCTTCGTATGGAGCAGAAGATTTCGTGGGAAACAATGATAGC
GCGAATGTTGCGGCCTGTGGATCGTGATGAAGCAGACATAACATCCGGGT
TTCTTGTCTTCAATCACAATCGACGAGATTCAGAACAAGGTTTATTTCAA
AATGGATTTGTTATAAAACAGAATAAAAACAACATATCATTTGAGAATGT
AGAAGAATCATGGAATCTTGGACCAGAAACTTGGGAAAGTATAAACGGAA
CTAGTGGGTTTTTATTAGCACGAACGGAGTTCTTGAAGAAAACTGGGTGG
AAAGACTACGGTCCCTTCACTGAGGCGGAATTTTCTATTCGATTGTGGCG
CTCAAACGCACGGGTGAGACTTGTGAAAAGTGGCATTCGCCACGGATATC
ACTACGCGGCTTATCCACCGTCAGAGACTAAATCAGACGTGAAGAAGTAT
TCAGCTCCGTTTTGTAAACAAATTGCTCGTGTACTGAGGCTAAAACAAGT
AGGTCGTGTGTCTTTTTCCAGCGCGACAGTTGAGTGTTCCAAACGATGGT
TTAGGAGGAAGTACAATTATCGGAAGAGATGGCTGAATTCTTTTGTTGAG
TGGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2119458..2121263-

>Gchil4330.t1 ID=Gchil4330.t1|Name=Gchil4330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1806bp|location=Sequence derived from alignment at tig00004373_pilon:2119458..2121263- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCAACGACGTATTTCAGGACGATTCTATGCTCCCTTACTTGTGTC
GATTTCATTATCAATATTGCTAACGGTGGTCCACCGGCTTGAAATCATTC
GCCTGTCTTCTCAATCCCTGGCTGGCCCACTAGTGTCCTCCGTAACATTA
CCATGGTCACGGACACATTGTAAACTCCTAGCTTTGGTCCCCGTATCACC
GGAGGACATTCAAATTGGTACGATTCGCACATGGTTTTCCACCATATCAT
CGAATTATACTTCTACTGTTTGTTGCGTGGCCGTAATTCGTTCCCAAAGC
TCCCATCCACAACTCGAACGTAATACCGACTCCTGCGATGTACTGCACGT
ACCGATGGTGCGTCCAGATGATTATCTTTCTCTTTCAGAGAAGGTTCAGT
TGGCTCTCATTCATGCCGCTTCTTACTATGACTTTGATTGGTTATTGAAG
ACCGATTCCGATTCATTTGTATGTTTTTCACGCGTATTTCGCTTGCTCGG
CAACTTTGACTCGAGTGGAATTGTTCATGTGGGACACGCAGAGTCAAATA
ACTCTTTGAAATATGATCCTACACACAAATGGTACGATCCTGGTTTGACC
GATATTGTACATAACCCCCGACAGCTTCTCGAAGTAGGAAAAGTCACGCA
TCATCCGTATATGCAAGGAGCTGGTTATATAATATCACGCGGTGCGTATA
ATGCCTTGCAAAGTGTGTATAGGCTACTGAGATATAGTCCAATCGAAGAC
ATCATGGTGGGGGGTTGGTTGGTGGCTTTTACTACGCATCGAGCGTCAAT
GGTTTTGAATCTGTGGTCGACTCGTCGTCATTGTTACTTGCCCTCCTCTA
CTTTTATTGCCCATAAGCGGAAAGGCAAGGCAAGATTAGAAAGATGTATC
GAAACGAATGCCCACTGCCTTCGAGCGCCCAAAACAGACGATGTCGACGT
GCGAAAAGTTGCTTTCGTGATCGAGGGAGATATTTCAAATAACACAAGGC
AGTTCATGGATCTTTATGAAAGCATCCGTGCGGCATTTCCACAAAATGAG
GTCGTTGTCGGCGACACATCCATTTCAGATTCGTCAATGAAGAGATTCTT
GTCTTCGAAGAGTGAGGACAATGTGAAAGTGTTTTGGCTATTCAATACTT
CGAGAGCTCTGGTGTTGAATCGATTGGTTGACAAAACGAGCTCGCCATTT
GCATGCATTCTTCGTATGGAGCAGAAGATTTCGTGGGAAACAATGATAGC
GCGAATGTTGCGGCCTGTGGATCGTGATGAAGCAGACATAACATCCGGGT
TTCTTGTCTTCAATCACAATCGACGAGATTCAGAACAAGGTTTATTTCAA
AATGGATTTGTTATAAAACAGAATAAAAACAACATATCATTTGAGAATGT
AGAAGAATCATGGAATCTTGGACCAGAAACTTGGGAAAGTATAAACGGAA
CTAGTGGGTTTTTATTAGCACGAACGGAGTTCTTGAAGAAAACTGGGTGG
AAAGACTACGGTCCCTTCACTGAGGCGGAATTTTCTATTCGATTGTGGCG
CTCAAACGCACGGGTGAGACTTGTGAAAAGTGGCATTCGCCACGGATATC
ACTACGCGGCTTATCCACCGTCAGAGACTAAATCAGACGTGAAGAAGTAT
TCAGCTCCGTTTTGTAAACAAATTGCTCGTGTACTGAGGCTAAAACAAGT
AGGTCGTGTGTCTTTTTCCAGCGCGACAGTTGAGTGTTCCAAACGATGGT
TTAGGAGGAAGTACAATTATCGGAAGAGATGGCTGAATTCTTTTGTTGAG
TGGTAA
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