Gchil4325.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4325.t1
Unique Name	Gchil4325.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2104474..2106120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR205CT
PFAMs	WHEP-TRS,tRNA-synt_2,tRNA_anti-codon
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01893
KEGG Reaction	R03648
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue	3.75e-202
EggNOG OGs	COG0017@1\|root,KOG0554@2759\|Eukaryota
EC	6.1.1.22
Description	asparagine-tRNA ligase activity
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4325	Gchil4325	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2104474..2106120 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4325.t1.start1	Gchil4325.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2104474..2104476 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4325.t1.CDS1	Gchil4325.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2104474..2106120 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4325.t1.exon1	Gchil4325.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2104474..2106120 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4325.t1.stop1	Gchil4325.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2106118..2106120 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4325.t1	Gchil4325.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2104474..2106120 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2104474..2106120+
coding sequence from alignment at tig00004373_pilon:2104474..2106120+

mRNA sequence

>Gchil4325.t1 ID=Gchil4325.t1|Name=Gchil4325.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp
MCVSFVSPHASRLFSPPLRSFRSAFLKPSFHPARARAVVAATSTFSVRHL
PFATAVAPTEPASKSQPALPRTKLNAVTAQLVGNTLCVKGWVRSVRAQKA
FAFIDLNDGTNLSGLQIVVDGHAPCFPLVSSLSTGCSISAVGELVASLGS
AQPVELRASTLKLIGTAADYPLQKKRHSLEFLRSIAHLRPRTNSIAAVSR
IRSALAVATHSFFDELGFVYVHAPLITASDCEGAGEMFRVTTALNPDGTP
NTHVDASEGDAATKVPRVQFQNDFFGKPAFLTVSGQLSAECFATALGDVY
TFGPTFRAENSNTSRHLAEFWMIEPEMAFADLKDDMDNAERLVKYLVSYI
LQKCDQDLAFFDRFVEKGLLRKLNTVADEDFARISYTEAIEILDKVNKPN
KKGKRRFEFEVRWGIDLQSEHERYLAEQHFQKPVFVYNYPSAIKAFYMRA
NDEDDGKTCAAMDLLVPGIGELVGGSQREERLDVLEEKIERNGLEKEAYW
WYLDLRRFGSVPHAGYGLGFERLVQFVTGMDNIRDVIPFPRYPGNAEF*

spliced messenger RNA

>Gchil4325.t1 ID=Gchil4325.t1|Name=Gchil4325.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00004373_pilon:2104474..2106120+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTCTCGTTTGTGTCACCGCACGCCTCGCGCCTGTTTTCCCCCCC
ACTGCGCTCCTTCAGAAGCGCCTTTCTCAAGCCGTCGTTTCACCCCGCGC
GAGCCCGCGCTGTCGTCGCCGCTACCTCCACCTTCTCCGTCAGACATTTG
CCATTCGCCACTGCCGTCGCACCCACAGAGCCCGCCTCAAAGTCACAACC
GGCTTTGCCGCGTACCAAGCTCAATGCCGTCACTGCCCAGCTCGTTGGAA
ACACGCTTTGCGTCAAGGGCTGGGTCCGTTCCGTGCGCGCCCAGAAAGCT
TTTGCCTTCATCGATCTCAACGACGGCACCAATCTCTCCGGCTTGCAGAT
TGTTGTCGATGGCCACGCCCCCTGTTTCCCCCTCGTGTCCAGCCTTTCGA
CTGGCTGTTCCATCAGTGCCGTTGGAGAGCTTGTTGCGTCGCTTGGAAGC
GCTCAGCCGGTTGAATTGCGCGCTTCCACCCTCAAATTGATCGGCACTGC
GGCCGATTACCCGCTACAGAAGAAACGCCACTCGTTGGAATTTCTGCGCT
CAATTGCTCATCTCAGACCGAGAACCAATTCTATCGCCGCCGTTTCTAGG
ATACGATCGGCGCTGGCAGTTGCCACCCACTCGTTTTTTGACGAGCTTGG
GTTTGTTTACGTCCATGCCCCGCTCATAACTGCCAGTGATTGTGAGGGCG
CCGGAGAGATGTTCCGCGTCACTACTGCATTGAATCCCGATGGCACCCCG
AATACGCACGTTGATGCGAGCGAAGGAGATGCTGCTACCAAAGTCCCCAG
AGTGCAATTTCAAAACGACTTCTTTGGAAAGCCCGCTTTTCTCACCGTGT
CTGGTCAGCTCAGTGCTGAGTGCTTTGCCACCGCGTTAGGCGATGTTTAT
ACGTTTGGACCCACTTTCCGCGCCGAGAATAGTAACACTTCTAGACATCT
GGCAGAGTTTTGGATGATTGAACCTGAAATGGCGTTTGCCGATTTGAAAG
ATGATATGGATAATGCCGAACGGCTTGTTAAATACCTTGTCTCATACATT
TTGCAAAAGTGTGATCAGGACCTTGCGTTTTTCGATCGCTTTGTTGAGAA
AGGGCTCTTGCGCAAGTTGAATACGGTGGCGGATGAAGACTTTGCGCGTA
TCTCGTACACGGAGGCAATTGAAATCCTTGACAAGGTCAACAAACCCAAC
AAGAAGGGGAAGAGACGATTTGAATTTGAGGTGAGATGGGGAATCGATCT
TCAGTCAGAACATGAACGCTATCTAGCAGAACAACATTTTCAAAAGCCAG
TATTTGTGTACAATTACCCCAGCGCCATCAAAGCGTTTTACATGCGAGCA
AATGATGAAGACGACGGGAAAACTTGTGCGGCTATGGACTTGCTCGTACC
GGGCATTGGTGAGCTTGTTGGAGGCAGTCAGAGAGAGGAACGATTAGATG
TTCTTGAGGAAAAAATTGAACGGAATGGTCTGGAAAAGGAAGCGTATTGG
TGGTATCTGGATCTTAGACGGTTTGGAAGCGTGCCACATGCGGGGTACGG
CCTGGGATTTGAGAGATTGGTGCAGTTTGTTACTGGCATGGATAACATTC
GCGACGTTATTCCTTTTCCAAGATATCCGGGAAATGCCGAGTTTTGA

protein sequence of Gchil4325.t1

>Gchil4325.t1 ID=Gchil4325.t1|Name=Gchil4325.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=549bp
MCVSFVSPHASRLFSPPLRSFRSAFLKPSFHPARARAVVAATSTFSVRHL
PFATAVAPTEPASKSQPALPRTKLNAVTAQLVGNTLCVKGWVRSVRAQKA
FAFIDLNDGTNLSGLQIVVDGHAPCFPLVSSLSTGCSISAVGELVASLGS
AQPVELRASTLKLIGTAADYPLQKKRHSLEFLRSIAHLRPRTNSIAAVSR
IRSALAVATHSFFDELGFVYVHAPLITASDCEGAGEMFRVTTALNPDGTP
NTHVDASEGDAATKVPRVQFQNDFFGKPAFLTVSGQLSAECFATALGDVY
TFGPTFRAENSNTSRHLAEFWMIEPEMAFADLKDDMDNAERLVKYLVSYI
LQKCDQDLAFFDRFVEKGLLRKLNTVADEDFARISYTEAIEILDKVNKPN
KKGKRRFEFEVRWGIDLQSEHERYLAEQHFQKPVFVYNYPSAIKAFYMRA
NDEDDGKTCAAMDLLVPGIGELVGGSQREERLDVLEEKIERNGLEKEAYW
WYLDLRRFGSVPHAGYGLGFERLVQFVTGMDNIRDVIPFPRYPGNAEF*

mRNA from alignment at tig00004373_pilon:2104474..2106120+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4325.t1 ID=Gchil4325.t1|Name=Gchil4325.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00004373_pilon:2104474..2106120+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGTCTCGTTTGTGTCACCGCACGCCTCGCGCCTGTTTTCCCCCCC
ACTGCGCTCCTTCAGAAGCGCCTTTCTCAAGCCGTCGTTTCACCCCGCGC
GAGCCCGCGCTGTCGTCGCCGCTACCTCCACCTTCTCCGTCAGACATTTG
CCATTCGCCACTGCCGTCGCACCCACAGAGCCCGCCTCAAAGTCACAACC
GGCTTTGCCGCGTACCAAGCTCAATGCCGTCACTGCCCAGCTCGTTGGAA
ACACGCTTTGCGTCAAGGGCTGGGTCCGTTCCGTGCGCGCCCAGAAAGCT
TTTGCCTTCATCGATCTCAACGACGGCACCAATCTCTCCGGCTTGCAGAT
TGTTGTCGATGGCCACGCCCCCTGTTTCCCCCTCGTGTCCAGCCTTTCGA
CTGGCTGTTCCATCAGTGCCGTTGGAGAGCTTGTTGCGTCGCTTGGAAGC
GCTCAGCCGGTTGAATTGCGCGCTTCCACCCTCAAATTGATCGGCACTGC
GGCCGATTACCCGCTACAGAAGAAACGCCACTCGTTGGAATTTCTGCGCT
CAATTGCTCATCTCAGACCGAGAACCAATTCTATCGCCGCCGTTTCTAGG
ATACGATCGGCGCTGGCAGTTGCCACCCACTCGTTTTTTGACGAGCTTGG
GTTTGTTTACGTCCATGCCCCGCTCATAACTGCCAGTGATTGTGAGGGCG
CCGGAGAGATGTTCCGCGTCACTACTGCATTGAATCCCGATGGCACCCCG
AATACGCACGTTGATGCGAGCGAAGGAGATGCTGCTACCAAAGTCCCCAG
AGTGCAATTTCAAAACGACTTCTTTGGAAAGCCCGCTTTTCTCACCGTGT
CTGGTCAGCTCAGTGCTGAGTGCTTTGCCACCGCGTTAGGCGATGTTTAT
ACGTTTGGACCCACTTTCCGCGCCGAGAATAGTAACACTTCTAGACATCT
GGCAGAGTTTTGGATGATTGAACCTGAAATGGCGTTTGCCGATTTGAAAG
ATGATATGGATAATGCCGAACGGCTTGTTAAATACCTTGTCTCATACATT
TTGCAAAAGTGTGATCAGGACCTTGCGTTTTTCGATCGCTTTGTTGAGAA
AGGGCTCTTGCGCAAGTTGAATACGGTGGCGGATGAAGACTTTGCGCGTA
TCTCGTACACGGAGGCAATTGAAATCCTTGACAAGGTCAACAAACCCAAC
AAGAAGGGGAAGAGACGATTTGAATTTGAGGTGAGATGGGGAATCGATCT
TCAGTCAGAACATGAACGCTATCTAGCAGAACAACATTTTCAAAAGCCAG
TATTTGTGTACAATTACCCCAGCGCCATCAAAGCGTTTTACATGCGAGCA
AATGATGAAGACGACGGGAAAACTTGTGCGGCTATGGACTTGCTCGTACC
GGGCATTGGTGAGCTTGTTGGAGGCAGTCAGAGAGAGGAACGATTAGATG
TTCTTGAGGAAAAAATTGAACGGAATGGTCTGGAAAAGGAAGCGTATTGG
TGGTATCTGGATCTTAGACGGTTTGGAAGCGTGCCACATGCGGGGTACGG
CCTGGGATTTGAGAGATTGGTGCAGTTTGTTACTGGCATGGATAACATTC
GCGACGTTATTCCTTTTCCAAGATATCCGGGAAATGCCGAGTTTTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:2104474..2106120+

>Gchil4325.t1 ID=Gchil4325.t1|Name=Gchil4325.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00004373_pilon:2104474..2106120+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGTCTCGTTTGTGTCACCGCACGCCTCGCGCCTGTTTTCCCCCCC
ACTGCGCTCCTTCAGAAGCGCCTTTCTCAAGCCGTCGTTTCACCCCGCGC
GAGCCCGCGCTGTCGTCGCCGCTACCTCCACCTTCTCCGTCAGACATTTG
CCATTCGCCACTGCCGTCGCACCCACAGAGCCCGCCTCAAAGTCACAACC
GGCTTTGCCGCGTACCAAGCTCAATGCCGTCACTGCCCAGCTCGTTGGAA
ACACGCTTTGCGTCAAGGGCTGGGTCCGTTCCGTGCGCGCCCAGAAAGCT
TTTGCCTTCATCGATCTCAACGACGGCACCAATCTCTCCGGCTTGCAGAT
TGTTGTCGATGGCCACGCCCCCTGTTTCCCCCTCGTGTCCAGCCTTTCGA
CTGGCTGTTCCATCAGTGCCGTTGGAGAGCTTGTTGCGTCGCTTGGAAGC
GCTCAGCCGGTTGAATTGCGCGCTTCCACCCTCAAATTGATCGGCACTGC
GGCCGATTACCCGCTACAGAAGAAACGCCACTCGTTGGAATTTCTGCGCT
CAATTGCTCATCTCAGACCGAGAACCAATTCTATCGCCGCCGTTTCTAGG
ATACGATCGGCGCTGGCAGTTGCCACCCACTCGTTTTTTGACGAGCTTGG
GTTTGTTTACGTCCATGCCCCGCTCATAACTGCCAGTGATTGTGAGGGCG
CCGGAGAGATGTTCCGCGTCACTACTGCATTGAATCCCGATGGCACCCCG
AATACGCACGTTGATGCGAGCGAAGGAGATGCTGCTACCAAAGTCCCCAG
AGTGCAATTTCAAAACGACTTCTTTGGAAAGCCCGCTTTTCTCACCGTGT
CTGGTCAGCTCAGTGCTGAGTGCTTTGCCACCGCGTTAGGCGATGTTTAT
ACGTTTGGACCCACTTTCCGCGCCGAGAATAGTAACACTTCTAGACATCT
GGCAGAGTTTTGGATGATTGAACCTGAAATGGCGTTTGCCGATTTGAAAG
ATGATATGGATAATGCCGAACGGCTTGTTAAATACCTTGTCTCATACATT
TTGCAAAAGTGTGATCAGGACCTTGCGTTTTTCGATCGCTTTGTTGAGAA
AGGGCTCTTGCGCAAGTTGAATACGGTGGCGGATGAAGACTTTGCGCGTA
TCTCGTACACGGAGGCAATTGAAATCCTTGACAAGGTCAACAAACCCAAC
AAGAAGGGGAAGAGACGATTTGAATTTGAGGTGAGATGGGGAATCGATCT
TCAGTCAGAACATGAACGCTATCTAGCAGAACAACATTTTCAAAAGCCAG
TATTTGTGTACAATTACCCCAGCGCCATCAAAGCGTTTTACATGCGAGCA
AATGATGAAGACGACGGGAAAACTTGTGCGGCTATGGACTTGCTCGTACC
GGGCATTGGTGAGCTTGTTGGAGGCAGTCAGAGAGAGGAACGATTAGATG
TTCTTGAGGAAAAAATTGAACGGAATGGTCTGGAAAAGGAAGCGTATTGG
TGGTATCTGGATCTTAGACGGTTTGGAAGCGTGCCACATGCGGGGTACGG
CCTGGGATTTGAGAGATTGGTGCAGTTTGTTACTGGCATGGATAACATTC
GCGACGTTATTCCTTTTCCAAGATATCCGGGAAATGCCGAGTTTTGA