Gchil4323.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4323.t1
Unique NameGchil4323.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2102269..2103009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT178CT
Max annot lvl2759|Eukaryota
Evalue3.11e-07
EggNOG OGs2E65F@1|root,2SCWR@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4323Gchil4323Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2102269..2103009 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4323.t1.stop1Gchil4323.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2102269..2102271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4323.t1.CDS1Gchil4323.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2102269..2103009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4323.t1.exon1Gchil4323.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2102269..2103009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4323.t1.start1Gchil4323.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2103007..2103009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4323.t1Gchil4323.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2102269..2103009 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4323.t1 ID=Gchil4323.t1|Name=Gchil4323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=247bp
MSPFVFVTSFQLTRRSHQSRTSSLRRTRVPPPLSPSVRHARLHCAPRCAA
DPASDDQAPSGAVLCGALELSFRNVWLRLMTSGVGPEYTHAIRAFVLAAA
ASYKAGYSLTALKFELVAHERHTTYMGRDIRLNDDEKKTRFIWLALVYLT
LKRCQFPTEKEAAFDIAADISASDIRELMPGLAAFVNNVYDAAQRGLDLQ
RYKLELSLSKNENSPELDKSQVSIRSQWARIVFTTLELMPGGQPKR*
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spliced messenger RNA

>Gchil4323.t1 ID=Gchil4323.t1|Name=Gchil4323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004373_pilon:2102269..2103009- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCTTCGTCTTTGTCACATCGTTCCAGCTCACGCGCCGCTCGCA
CCAGAGCCGCACATCTTCGCTGCGACGCACGCGCGTCCCACCACCATTGT
CTCCGTCGGTGCGTCACGCGCGCTTGCATTGCGCCCCGCGCTGTGCCGCA
GACCCGGCGTCAGACGACCAAGCTCCGTCAGGAGCCGTGCTTTGCGGCGC
GCTAGAGCTTTCTTTTCGAAATGTGTGGTTGCGTCTCATGACTTCCGGTG
TCGGCCCGGAGTATACGCACGCCATTCGTGCCTTTGTCCTGGCTGCCGCA
GCTTCGTACAAGGCTGGCTACTCACTCACTGCGCTCAAGTTTGAACTCGT
CGCCCACGAAAGACATACCACCTATATGGGACGCGACATACGCCTCAATG
ACGACGAGAAGAAAACAAGGTTCATTTGGTTGGCTTTGGTGTATCTCACA
CTCAAACGATGTCAGTTTCCCACAGAAAAGGAGGCCGCCTTTGACATTGC
CGCAGACATAAGCGCCTCTGACATCAGAGAGCTCATGCCCGGGCTCGCAG
CCTTTGTCAACAATGTGTACGACGCTGCACAGAGGGGACTCGATCTGCAA
CGGTACAAACTAGAGCTCAGTTTGAGCAAAAATGAAAACAGCCCCGAACT
CGACAAGTCCCAAGTCAGTATTCGTAGTCAATGGGCCCGAATCGTCTTCA
CAACCTTGGAATTGATGCCTGGTGGTCAACCAAAGCGCTGA
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protein sequence of Gchil4323.t1

>Gchil4323.t1 ID=Gchil4323.t1|Name=Gchil4323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=247bp
MSPFVFVTSFQLTRRSHQSRTSSLRRTRVPPPLSPSVRHARLHCAPRCAA
DPASDDQAPSGAVLCGALELSFRNVWLRLMTSGVGPEYTHAIRAFVLAAA
ASYKAGYSLTALKFELVAHERHTTYMGRDIRLNDDEKKTRFIWLALVYLT
LKRCQFPTEKEAAFDIAADISASDIRELMPGLAAFVNNVYDAAQRGLDLQ
RYKLELSLSKNENSPELDKSQVSIRSQWARIVFTTLELMPGGQPKR*
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mRNA from alignment at tig00004373_pilon:2102269..2103009-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4323.t1 ID=Gchil4323.t1|Name=Gchil4323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004373_pilon:2102269..2103009- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCTTCGTCTTTGTCACATCGTTCCAGCTCACGCGCCGCTCGCA
CCAGAGCCGCACATCTTCGCTGCGACGCACGCGCGTCCCACCACCATTGT
CTCCGTCGGTGCGTCACGCGCGCTTGCATTGCGCCCCGCGCTGTGCCGCA
GACCCGGCGTCAGACGACCAAGCTCCGTCAGGAGCCGTGCTTTGCGGCGC
GCTAGAGCTTTCTTTTCGAAATGTGTGGTTGCGTCTCATGACTTCCGGTG
TCGGCCCGGAGTATACGCACGCCATTCGTGCCTTTGTCCTGGCTGCCGCA
GCTTCGTACAAGGCTGGCTACTCACTCACTGCGCTCAAGTTTGAACTCGT
CGCCCACGAAAGACATACCACCTATATGGGACGCGACATACGCCTCAATG
ACGACGAGAAGAAAACAAGGTTCATTTGGTTGGCTTTGGTGTATCTCACA
CTCAAACGATGTCAGTTTCCCACAGAAAAGGAGGCCGCCTTTGACATTGC
CGCAGACATAAGCGCCTCTGACATCAGAGAGCTCATGCCCGGGCTCGCAG
CCTTTGTCAACAATGTGTACGACGCTGCACAGAGGGGACTCGATCTGCAA
CGGTACAAACTAGAGCTCAGTTTGAGCAAAAATGAAAACAGCCCCGAACT
CGACAAGTCCCAAGTCAGTATTCGTAGTCAATGGGCCCGAATCGTCTTCA
CAACCTTGGAATTGATGCCTGGTGGTCAACCAAAGCGCTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2102269..2103009-

>Gchil4323.t1 ID=Gchil4323.t1|Name=Gchil4323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00004373_pilon:2102269..2103009- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCTTCGTCTTTGTCACATCGTTCCAGCTCACGCGCCGCTCGCA
CCAGAGCCGCACATCTTCGCTGCGACGCACGCGCGTCCCACCACCATTGT
CTCCGTCGGTGCGTCACGCGCGCTTGCATTGCGCCCCGCGCTGTGCCGCA
GACCCGGCGTCAGACGACCAAGCTCCGTCAGGAGCCGTGCTTTGCGGCGC
GCTAGAGCTTTCTTTTCGAAATGTGTGGTTGCGTCTCATGACTTCCGGTG
TCGGCCCGGAGTATACGCACGCCATTCGTGCCTTTGTCCTGGCTGCCGCA
GCTTCGTACAAGGCTGGCTACTCACTCACTGCGCTCAAGTTTGAACTCGT
CGCCCACGAAAGACATACCACCTATATGGGACGCGACATACGCCTCAATG
ACGACGAGAAGAAAACAAGGTTCATTTGGTTGGCTTTGGTGTATCTCACA
CTCAAACGATGTCAGTTTCCCACAGAAAAGGAGGCCGCCTTTGACATTGC
CGCAGACATAAGCGCCTCTGACATCAGAGAGCTCATGCCCGGGCTCGCAG
CCTTTGTCAACAATGTGTACGACGCTGCACAGAGGGGACTCGATCTGCAA
CGGTACAAACTAGAGCTCAGTTTGAGCAAAAATGAAAACAGCCCCGAACT
CGACAAGTCCCAAGTCAGTATTCGTAGTCAATGGGCCCGAATCGTCTTCA
CAACCTTGGAATTGATGCCTGGTGGTCAACCAAAGCGCTGA
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