Gchil4317.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4317.t1
Unique NameGchil4317.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2086179..2087438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005646780.1
PFAMsPP2C
Max annot lvl3041|Chlorophyta
KEGG koko:K17506
Evalue1.88e-34
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,37P2Y@33090|Viridiplantae,34J4W@3041|Chlorophyta
EC3.1.3.16
DescriptionSigma factor PP2C-like phosphatases
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4317Gchil4317Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2086179..2087438 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4317.t1.stop1Gchil4317.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2086179..2086181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4317.t1.CDS1Gchil4317.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2086179..2087438 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4317.t1.exon1Gchil4317.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2086179..2087438 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4317.t1.start1Gchil4317.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2087436..2087438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4317.t1Gchil4317.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2086179..2087438 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4317.t1 ID=Gchil4317.t1|Name=Gchil4317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp
MQASQSNGNENAKDKRYCRQRLEECAADIPSSQRRHAPRPPKLKLSKASP
ATIPTNSQSPPELRADGEVFAAMARKGKRHHNLEDRFAAKDLAQRGLRPF
VSLFGIFDGHGGVEAADLSSERLFGFILSAYRRSGDIRAAMRTAFIKMDN
TLFQLYLVTTGSITKRSKKTSSMSDHSLPRTDIPVRVKKLSGLCGTTATV
VALVENTMTIAYVGDSRVIAFGKKDVVRLSEDHRESNPTEQTRCVKEGGY
FFKGRINGVLSLTRSIGDVEQRTLVLAEPDVNEVQLAGFEAVVIASDGVW
DVLRDDEVAEITRKHIVKSEGLAAQRILDTAQGKGVRDDVSAMVVNLKKY
GRRLTKLSMDSVSTPLSCADALTPTTTSLSALSLSTPRYLSPEPESLESL
SPGPSPLPTPHSKRTNVWK*
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spliced messenger RNA

>Gchil4317.t1 ID=Gchil4317.t1|Name=Gchil4317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:2086179..2087438- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCCTCGCAGTCGAACGGAAACGAAAATGCAAAAGATAAACGATA
TTGTCGACAACGTTTGGAGGAATGCGCGGCTGATATCCCAAGTTCTCAAA
GAAGACATGCACCCCGTCCACCGAAATTGAAACTGTCAAAAGCCTCACCT
GCAACTATTCCTACCAATTCTCAATCTCCACCTGAGCTACGAGCTGATGG
GGAGGTATTTGCAGCTATGGCAAGAAAAGGAAAGCGGCATCACAACCTCG
AAGACAGATTTGCTGCAAAAGACCTTGCACAGAGAGGACTACGACCTTTT
GTTTCTCTCTTTGGCATCTTTGATGGACACGGTGGGGTTGAAGCTGCAGA
TTTATCCAGCGAACGATTATTCGGTTTCATTTTAAGCGCGTATCGAAGAA
GCGGGGATATCAGAGCCGCAATGCGTACCGCATTTATCAAGATGGACAAC
ACTTTGTTTCAGCTATACCTCGTTACCACAGGATCTATCACCAAACGATC
AAAGAAGACGTCCTCGATGTCTGATCACTCGCTACCACGTACAGATATTC
CAGTAAGGGTCAAGAAATTAAGCGGTCTTTGCGGAACAACTGCGACAGTG
GTGGCTCTAGTAGAAAATACCATGACCATTGCATACGTTGGGGACTCTCG
GGTCATTGCTTTTGGGAAAAAGGATGTTGTGCGTCTCTCTGAGGACCATC
GAGAATCGAATCCCACCGAGCAGACGAGGTGTGTAAAGGAAGGAGGATAT
TTTTTTAAAGGAAGAATAAATGGAGTTTTGTCGTTAACTCGATCGATTGG
AGACGTAGAGCAAAGAACTCTCGTGCTCGCTGAACCCGATGTTAATGAGG
TTCAACTGGCTGGTTTCGAGGCGGTAGTCATCGCAAGCGATGGGGTTTGG
GACGTCCTAAGGGATGATGAAGTCGCAGAAATCACAAGGAAACATATAGT
CAAAAGTGAAGGGCTGGCGGCCCAAAGAATACTGGATACAGCCCAAGGCA
AGGGAGTCCGTGACGATGTCAGTGCTATGGTCGTGAATTTGAAGAAATAC
GGACGAAGGTTAACAAAGCTTTCTATGGATTCTGTTTCCACTCCTTTGTC
CTGTGCGGATGCATTGACACCAACAACGACTTCACTTTCAGCTTTGTCTC
TTTCTACGCCAAGATACTTATCTCCAGAACCTGAGTCACTGGAATCCCTC
TCACCTGGACCTTCACCTCTTCCCACCCCCCATTCGAAAAGAACAAATGT
ATGGAAATAA
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protein sequence of Gchil4317.t1

>Gchil4317.t1 ID=Gchil4317.t1|Name=Gchil4317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MQASQSNGNENAKDKRYCRQRLEECAADIPSSQRRHAPRPPKLKLSKASP
ATIPTNSQSPPELRADGEVFAAMARKGKRHHNLEDRFAAKDLAQRGLRPF
VSLFGIFDGHGGVEAADLSSERLFGFILSAYRRSGDIRAAMRTAFIKMDN
TLFQLYLVTTGSITKRSKKTSSMSDHSLPRTDIPVRVKKLSGLCGTTATV
VALVENTMTIAYVGDSRVIAFGKKDVVRLSEDHRESNPTEQTRCVKEGGY
FFKGRINGVLSLTRSIGDVEQRTLVLAEPDVNEVQLAGFEAVVIASDGVW
DVLRDDEVAEITRKHIVKSEGLAAQRILDTAQGKGVRDDVSAMVVNLKKY
GRRLTKLSMDSVSTPLSCADALTPTTTSLSALSLSTPRYLSPEPESLESL
SPGPSPLPTPHSKRTNVWK*
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mRNA from alignment at tig00004373_pilon:2086179..2087438-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4317.t1 ID=Gchil4317.t1|Name=Gchil4317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:2086179..2087438- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGCCTCGCAGTCGAACGGAAACGAAAATGCAAAAGATAAACGATA
TTGTCGACAACGTTTGGAGGAATGCGCGGCTGATATCCCAAGTTCTCAAA
GAAGACATGCACCCCGTCCACCGAAATTGAAACTGTCAAAAGCCTCACCT
GCAACTATTCCTACCAATTCTCAATCTCCACCTGAGCTACGAGCTGATGG
GGAGGTATTTGCAGCTATGGCAAGAAAAGGAAAGCGGCATCACAACCTCG
AAGACAGATTTGCTGCAAAAGACCTTGCACAGAGAGGACTACGACCTTTT
GTTTCTCTCTTTGGCATCTTTGATGGACACGGTGGGGTTGAAGCTGCAGA
TTTATCCAGCGAACGATTATTCGGTTTCATTTTAAGCGCGTATCGAAGAA
GCGGGGATATCAGAGCCGCAATGCGTACCGCATTTATCAAGATGGACAAC
ACTTTGTTTCAGCTATACCTCGTTACCACAGGATCTATCACCAAACGATC
AAAGAAGACGTCCTCGATGTCTGATCACTCGCTACCACGTACAGATATTC
CAGTAAGGGTCAAGAAATTAAGCGGTCTTTGCGGAACAACTGCGACAGTG
GTGGCTCTAGTAGAAAATACCATGACCATTGCATACGTTGGGGACTCTCG
GGTCATTGCTTTTGGGAAAAAGGATGTTGTGCGTCTCTCTGAGGACCATC
GAGAATCGAATCCCACCGAGCAGACGAGGTGTGTAAAGGAAGGAGGATAT
TTTTTTAAAGGAAGAATAAATGGAGTTTTGTCGTTAACTCGATCGATTGG
AGACGTAGAGCAAAGAACTCTCGTGCTCGCTGAACCCGATGTTAATGAGG
TTCAACTGGCTGGTTTCGAGGCGGTAGTCATCGCAAGCGATGGGGTTTGG
GACGTCCTAAGGGATGATGAAGTCGCAGAAATCACAAGGAAACATATAGT
CAAAAGTGAAGGGCTGGCGGCCCAAAGAATACTGGATACAGCCCAAGGCA
AGGGAGTCCGTGACGATGTCAGTGCTATGGTCGTGAATTTGAAGAAATAC
GGACGAAGGTTAACAAAGCTTTCTATGGATTCTGTTTCCACTCCTTTGTC
CTGTGCGGATGCATTGACACCAACAACGACTTCACTTTCAGCTTTGTCTC
TTTCTACGCCAAGATACTTATCTCCAGAACCTGAGTCACTGGAATCCCTC
TCACCTGGACCTTCACCTCTTCCCACCCCCCATTCGAAAAGAACAAATGT
ATGGAAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2086179..2087438-

>Gchil4317.t1 ID=Gchil4317.t1|Name=Gchil4317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:2086179..2087438- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGCCTCGCAGTCGAACGGAAACGAAAATGCAAAAGATAAACGATA
TTGTCGACAACGTTTGGAGGAATGCGCGGCTGATATCCCAAGTTCTCAAA
GAAGACATGCACCCCGTCCACCGAAATTGAAACTGTCAAAAGCCTCACCT
GCAACTATTCCTACCAATTCTCAATCTCCACCTGAGCTACGAGCTGATGG
GGAGGTATTTGCAGCTATGGCAAGAAAAGGAAAGCGGCATCACAACCTCG
AAGACAGATTTGCTGCAAAAGACCTTGCACAGAGAGGACTACGACCTTTT
GTTTCTCTCTTTGGCATCTTTGATGGACACGGTGGGGTTGAAGCTGCAGA
TTTATCCAGCGAACGATTATTCGGTTTCATTTTAAGCGCGTATCGAAGAA
GCGGGGATATCAGAGCCGCAATGCGTACCGCATTTATCAAGATGGACAAC
ACTTTGTTTCAGCTATACCTCGTTACCACAGGATCTATCACCAAACGATC
AAAGAAGACGTCCTCGATGTCTGATCACTCGCTACCACGTACAGATATTC
CAGTAAGGGTCAAGAAATTAAGCGGTCTTTGCGGAACAACTGCGACAGTG
GTGGCTCTAGTAGAAAATACCATGACCATTGCATACGTTGGGGACTCTCG
GGTCATTGCTTTTGGGAAAAAGGATGTTGTGCGTCTCTCTGAGGACCATC
GAGAATCGAATCCCACCGAGCAGACGAGGTGTGTAAAGGAAGGAGGATAT
TTTTTTAAAGGAAGAATAAATGGAGTTTTGTCGTTAACTCGATCGATTGG
AGACGTAGAGCAAAGAACTCTCGTGCTCGCTGAACCCGATGTTAATGAGG
TTCAACTGGCTGGTTTCGAGGCGGTAGTCATCGCAAGCGATGGGGTTTGG
GACGTCCTAAGGGATGATGAAGTCGCAGAAATCACAAGGAAACATATAGT
CAAAAGTGAAGGGCTGGCGGCCCAAAGAATACTGGATACAGCCCAAGGCA
AGGGAGTCCGTGACGATGTCAGTGCTATGGTCGTGAATTTGAAGAAATAC
GGACGAAGGTTAACAAAGCTTTCTATGGATTCTGTTTCCACTCCTTTGTC
CTGTGCGGATGCATTGACACCAACAACGACTTCACTTTCAGCTTTGTCTC
TTTCTACGCCAAGATACTTATCTCCAGAACCTGAGTCACTGGAATCCCTC
TCACCTGGACCTTCACCTCTTCCCACCCCCCATTCGAAAAGAACAAATGT
ATGGAAATAA
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