Gchil4311.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4311.t1
Unique NameGchil4311.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2076946..2077512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121033.AUCF01000008_gene5658
Preferred namernpA
PFAMsRibonuclease_P
Max annot lvl204441|Rhodospirillales
KEGG koko:K03536
Evalue2.51e-06
EggNOG OGsCOG0594@1|root,COG0594@2|Bacteria,1N6QY@1224|Proteobacteria,2UFAB@28211|Alphaproteobacteria,2JU1B@204441|Rhodospirillales
EC3.1.26.5
DescriptionRNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4311Gchil4311Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2076946..2077512 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4311.t1.start1Gchil4311.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2076946..2076948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4311.t1.CDS1Gchil4311.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2076946..2077512 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4311.t1.exon1Gchil4311.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2076946..2077512 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4311.t1.stop1Gchil4311.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2077510..2077512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4311.t1Gchil4311.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2076946..2077512 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4311.t1 ID=Gchil4311.t1|Name=Gchil4311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=189bp
METCNLLVWPLIVTKPQDDRYATSFAEFMERMNEEYDFENGEPEFDHEHP
IRAASKEASRGDSLILGDELALAQQIEDVDDPRLQPQAIRFDIPTWAYIV
RVRAPKSVLGKRAIQRNRVKRRIRAAAAQIMPNHAKRGYEYIFSAFPECL
TSPFSVILGDVERSLRNTYLWKDHMTEEELRRNMYCKR*
back to top

spliced messenger RNA

>Gchil4311.t1 ID=Gchil4311.t1|Name=Gchil4311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00004373_pilon:2076946..2077512+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACTTGTAATCTTCTGGTTTGGCCTTTGATCGTGACAAAACCGCA
AGATGATAGATATGCTACTTCGTTTGCCGAGTTTATGGAAAGGATGAACG
AAGAATATGATTTTGAAAACGGAGAACCTGAGTTCGACCACGAGCATCCT
ATTCGCGCTGCATCGAAGGAAGCTTCAAGAGGAGACAGTTTAATTCTTGG
TGATGAACTGGCACTCGCACAACAGATTGAAGATGTTGATGATCCACGGC
TTCAACCCCAGGCAATTCGTTTTGACATTCCTACATGGGCTTACATAGTT
CGTGTAAGGGCCCCGAAGAGCGTTCTAGGAAAACGAGCCATTCAACGAAA
TCGCGTGAAAAGACGAATACGAGCCGCTGCCGCACAGATCATGCCGAACC
ACGCTAAGCGTGGATACGAGTATATTTTCTCTGCCTTTCCAGAGTGTTTA
ACCTCACCTTTCTCAGTAATTTTGGGTGATGTAGAACGTTCGTTACGCAA
TACATATTTGTGGAAAGATCATATGACTGAGGAAGAACTCCGAAGGAATA
TGTACTGCAAACGTTAG
back to top

protein sequence of Gchil4311.t1

>Gchil4311.t1 ID=Gchil4311.t1|Name=Gchil4311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=189bp
METCNLLVWPLIVTKPQDDRYATSFAEFMERMNEEYDFENGEPEFDHEHP
IRAASKEASRGDSLILGDELALAQQIEDVDDPRLQPQAIRFDIPTWAYIV
RVRAPKSVLGKRAIQRNRVKRRIRAAAAQIMPNHAKRGYEYIFSAFPECL
TSPFSVILGDVERSLRNTYLWKDHMTEEELRRNMYCKR*
back to top

mRNA from alignment at tig00004373_pilon:2076946..2077512+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4311.t1 ID=Gchil4311.t1|Name=Gchil4311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00004373_pilon:2076946..2077512+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACTTGTAATCTTCTGGTTTGGCCTTTGATCGTGACAAAACCGCA
AGATGATAGATATGCTACTTCGTTTGCCGAGTTTATGGAAAGGATGAACG
AAGAATATGATTTTGAAAACGGAGAACCTGAGTTCGACCACGAGCATCCT
ATTCGCGCTGCATCGAAGGAAGCTTCAAGAGGAGACAGTTTAATTCTTGG
TGATGAACTGGCACTCGCACAACAGATTGAAGATGTTGATGATCCACGGC
TTCAACCCCAGGCAATTCGTTTTGACATTCCTACATGGGCTTACATAGTT
CGTGTAAGGGCCCCGAAGAGCGTTCTAGGAAAACGAGCCATTCAACGAAA
TCGCGTGAAAAGACGAATACGAGCCGCTGCCGCACAGATCATGCCGAACC
ACGCTAAGCGTGGATACGAGTATATTTTCTCTGCCTTTCCAGAGTGTTTA
ACCTCACCTTTCTCAGTAATTTTGGGTGATGTAGAACGTTCGTTACGCAA
TACATATTTGTGGAAAGATCATATGACTGAGGAAGAACTCCGAAGGAATA
TGTACTGCAAACGTTAG
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:2076946..2077512+

>Gchil4311.t1 ID=Gchil4311.t1|Name=Gchil4311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00004373_pilon:2076946..2077512+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACTTGTAATCTTCTGGTTTGGCCTTTGATCGTGACAAAACCGCA
AGATGATAGATATGCTACTTCGTTTGCCGAGTTTATGGAAAGGATGAACG
AAGAATATGATTTTGAAAACGGAGAACCTGAGTTCGACCACGAGCATCCT
ATTCGCGCTGCATCGAAGGAAGCTTCAAGAGGAGACAGTTTAATTCTTGG
TGATGAACTGGCACTCGCACAACAGATTGAAGATGTTGATGATCCACGGC
TTCAACCCCAGGCAATTCGTTTTGACATTCCTACATGGGCTTACATAGTT
CGTGTAAGGGCCCCGAAGAGCGTTCTAGGAAAACGAGCCATTCAACGAAA
TCGCGTGAAAAGACGAATACGAGCCGCTGCCGCACAGATCATGCCGAACC
ACGCTAAGCGTGGATACGAGTATATTTTCTCTGCCTTTCCAGAGTGTTTA
ACCTCACCTTTCTCAGTAATTTTGGGTGATGTAGAACGTTCGTTACGCAA
TACATATTTGTGGAAAGATCATATGACTGAGGAAGAACTCCGAAGGAATA
TGTACTGCAAACGTTAG
back to top