Gchil4307.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4307.t1
Unique NameGchil4307.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2001238..2002483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709337.1
PFAMsActin
Max annot lvl2759|Eukaryota
KEGG koko:K05692
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Evalue2.45e-234
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
DescriptionATP binding
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4307Gchil4307Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2001238..2002483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4307.t1Gchil4307.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2001238..2002483 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4307.t1.start1Gchil4307.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2001238..2001240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4307.t1.CDS1Gchil4307.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2001238..2001360 +
Gchil4307.t1.CDS2Gchil4307.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2001479..2002483 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4307.t1.exon1Gchil4307.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2001238..2001360 +
Gchil4307.t1.exon2Gchil4307.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2001479..2002483 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4307.t1.intron1Gchil4307.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 2001361..2001478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4307.t1.stop1Gchil4307.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2002481..2002483 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4307.t1 ID=Gchil4307.t1|Name=Gchil4307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=376bp
MSISKPAVVIDNGSGRCKTGIAGEDCPKAVFPAVIGKPKQKGIMVGTGQK
DEYVGDAAMARRGVLIIKYPLEHGIVTNWDDMEKIWHHAFYSELRVDPAE
HPVLLTEAPLNPKANRERMTQIMFETFNIPAFYVAIQAVLSLYASGRTSG
IVLDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTEWMAKLLQQRGYSF
TTSAELEIVRDIKQQLCFVAEDYEKELNNAKSNSSLEKEYELPDGQVITV
EAERFQCPEALFKPELLGNEMDGIHLTAYNSIMKTDIDIRKDLYNNIVMS
GGTTMFAGIASRVQKEIEAKAPPSMKIKVIAPPERQYSVWIGGSILSSLS
TFQQMWVSKTEYDEMGPSIVHRKCF*
back to top

spliced messenger RNA

>Gchil4307.t1 ID=Gchil4307.t1|Name=Gchil4307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00004373_pilon:2001238..2002483+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTATCTCCAAGCCCGCCGTCGTCATCGACAATGGTTCTGGCCGCTG
CAAGACTGGCATTGCCGGCGAGGATTGCCCAAAGGCCGTCTTCCCCGCCG
TCATTGGTAAGCCCAAGCAGAAGGGTATTATGGTCGGTACCGGACAAAAA
GATGAGTACGTTGGGGACGCCGCAATGGCTCGCCGTGGTGTTCTAATCAT
CAAGTACCCTCTGGAACACGGTATCGTCACAAACTGGGACGATATGGAAA
AGATATGGCATCATGCCTTTTACTCCGAACTCCGCGTTGACCCTGCAGAG
CATCCAGTGCTCCTCACTGAGGCTCCGCTTAACCCCAAGGCCAACCGCGA
ACGCATGACTCAAATCATGTTCGAGACCTTCAACATTCCGGCTTTCTACG
TCGCTATTCAGGCTGTACTCTCTCTGTACGCCTCCGGACGTACCTCCGGT
ATTGTGCTCGATTCTGGTGATGGTGTCACACATACCGTCCCTATTTATGA
GGGGTACTCTCTTCCTCATGCTGTTCTTCGAATTGATCTCGCTGGTCGCG
ATCTTACCGAATGGATGGCTAAGCTTTTGCAGCAACGTGGTTACTCTTTT
ACCACATCTGCTGAATTGGAAATTGTCCGCGATATCAAGCAACAACTTTG
CTTTGTTGCCGAAGACTACGAGAAGGAATTGAACAATGCCAAATCTAACT
CATCTCTCGAGAAGGAATACGAACTTCCTGACGGTCAGGTTATCACTGTT
GAAGCCGAGAGGTTCCAGTGCCCCGAGGCGTTATTCAAGCCCGAATTACT
CGGAAACGAAATGGATGGAATCCATCTCACTGCGTACAACTCCATCATGA
AGACTGACATTGATATCCGTAAGGATCTTTACAACAACATTGTCATGTCT
GGTGGAACTACTATGTTCGCTGGTATTGCGTCTCGCGTCCAGAAGGAAAT
CGAGGCAAAGGCGCCACCCTCCATGAAAATCAAGGTTATTGCCCCCCCTG
AGCGCCAATACTCAGTCTGGATTGGTGGTTCCATTTTGTCTTCACTCTCT
ACCTTCCAGCAGATGTGGGTGTCTAAGACTGAATACGATGAAATGGGTCC
GTCAATTGTTCATCGCAAGTGCTTCTAA
back to top

protein sequence of Gchil4307.t1

>Gchil4307.t1 ID=Gchil4307.t1|Name=Gchil4307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MSISKPAVVIDNGSGRCKTGIAGEDCPKAVFPAVIGKPKQKGIMVGTGQK
DEYVGDAAMARRGVLIIKYPLEHGIVTNWDDMEKIWHHAFYSELRVDPAE
HPVLLTEAPLNPKANRERMTQIMFETFNIPAFYVAIQAVLSLYASGRTSG
IVLDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTEWMAKLLQQRGYSF
TTSAELEIVRDIKQQLCFVAEDYEKELNNAKSNSSLEKEYELPDGQVITV
EAERFQCPEALFKPELLGNEMDGIHLTAYNSIMKTDIDIRKDLYNNIVMS
GGTTMFAGIASRVQKEIEAKAPPSMKIKVIAPPERQYSVWIGGSILSSLS
TFQQMWVSKTEYDEMGPSIVHRKCF*
back to top

mRNA from alignment at tig00004373_pilon:2001238..2002483+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4307.t1 ID=Gchil4307.t1|Name=Gchil4307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1246bp|location=Sequence derived from alignment at tig00004373_pilon:2001238..2002483+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTATCTCCAAGCCCGCCGTCGTCATCGACAATGGTTCTGGCCGCTG
CAAGACTGGCATTGCCGGCGAGGATTGCCCAAAGGCCGTCTTCCCCGCCG
TCATTGGTAAGCCCAAGCAGAAGGTAACTTTCGGCACTTTGTACATTCAC
ATCCGCATTCGATCGTCTTTACGCTAACCGTGTAATTCATGTTCAATGCA
TTCTTTTCATTTACTCCTTTTTCTTTTTTAAAATGACGTAGGGTATTATG
GTCGGTACCGGACAAAAAGATGAGTACGTTGGGGACGCCGCAATGGCTCG
CCGTGGTGTTCTAATCATCAAGTACCCTCTGGAACACGGTATCGTCACAA
ACTGGGACGATATGGAAAAGATATGGCATCATGCCTTTTACTCCGAACTC
CGCGTTGACCCTGCAGAGCATCCAGTGCTCCTCACTGAGGCTCCGCTTAA
CCCCAAGGCCAACCGCGAACGCATGACTCAAATCATGTTCGAGACCTTCA
ACATTCCGGCTTTCTACGTCGCTATTCAGGCTGTACTCTCTCTGTACGCC
TCCGGACGTACCTCCGGTATTGTGCTCGATTCTGGTGATGGTGTCACACA
TACCGTCCCTATTTATGAGGGGTACTCTCTTCCTCATGCTGTTCTTCGAA
TTGATCTCGCTGGTCGCGATCTTACCGAATGGATGGCTAAGCTTTTGCAG
CAACGTGGTTACTCTTTTACCACATCTGCTGAATTGGAAATTGTCCGCGA
TATCAAGCAACAACTTTGCTTTGTTGCCGAAGACTACGAGAAGGAATTGA
ACAATGCCAAATCTAACTCATCTCTCGAGAAGGAATACGAACTTCCTGAC
GGTCAGGTTATCACTGTTGAAGCCGAGAGGTTCCAGTGCCCCGAGGCGTT
ATTCAAGCCCGAATTACTCGGAAACGAAATGGATGGAATCCATCTCACTG
CGTACAACTCCATCATGAAGACTGACATTGATATCCGTAAGGATCTTTAC
AACAACATTGTCATGTCTGGTGGAACTACTATGTTCGCTGGTATTGCGTC
TCGCGTCCAGAAGGAAATCGAGGCAAAGGCGCCACCCTCCATGAAAATCA
AGGTTATTGCCCCCCCTGAGCGCCAATACTCAGTCTGGATTGGTGGTTCC
ATTTTGTCTTCACTCTCTACCTTCCAGCAGATGTGGGTGTCTAAGACTGA
ATACGATGAAATGGGTCCGTCAATTGTTCATCGCAAGTGCTTCTAA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:2001238..2002483+

>Gchil4307.t1 ID=Gchil4307.t1|Name=Gchil4307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00004373_pilon:2001238..2002483+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTATCTCCAAGCCCGCCGTCGTCATCGACAATGGTTCTGGCCGCTG
CAAGACTGGCATTGCCGGCGAGGATTGCCCAAAGGCCGTCTTCCCCGCCG
TCATTGGTAAGCCCAAGCAGAAGGGTATTATGGTCGGTACCGGACAAAAA
GATGAGTACGTTGGGGACGCCGCAATGGCTCGCCGTGGTGTTCTAATCAT
CAAGTACCCTCTGGAACACGGTATCGTCACAAACTGGGACGATATGGAAA
AGATATGGCATCATGCCTTTTACTCCGAACTCCGCGTTGACCCTGCAGAG
CATCCAGTGCTCCTCACTGAGGCTCCGCTTAACCCCAAGGCCAACCGCGA
ACGCATGACTCAAATCATGTTCGAGACCTTCAACATTCCGGCTTTCTACG
TCGCTATTCAGGCTGTACTCTCTCTGTACGCCTCCGGACGTACCTCCGGT
ATTGTGCTCGATTCTGGTGATGGTGTCACACATACCGTCCCTATTTATGA
GGGGTACTCTCTTCCTCATGCTGTTCTTCGAATTGATCTCGCTGGTCGCG
ATCTTACCGAATGGATGGCTAAGCTTTTGCAGCAACGTGGTTACTCTTTT
ACCACATCTGCTGAATTGGAAATTGTCCGCGATATCAAGCAACAACTTTG
CTTTGTTGCCGAAGACTACGAGAAGGAATTGAACAATGCCAAATCTAACT
CATCTCTCGAGAAGGAATACGAACTTCCTGACGGTCAGGTTATCACTGTT
GAAGCCGAGAGGTTCCAGTGCCCCGAGGCGTTATTCAAGCCCGAATTACT
CGGAAACGAAATGGATGGAATCCATCTCACTGCGTACAACTCCATCATGA
AGACTGACATTGATATCCGTAAGGATCTTTACAACAACATTGTCATGTCT
GGTGGAACTACTATGTTCGCTGGTATTGCGTCTCGCGTCCAGAAGGAAAT
CGAGGCAAAGGCGCCACCCTCCATGAAAATCAAGGTTATTGCCCCCCCTG
AGCGCCAATACTCAGTCTGGATTGGTGGTTCCATTTTGTCTTCACTCTCT
ACCTTCCAGCAGATGTGGGTGTCTAAGACTGAATACGATGAAATGGGTCC
GTCAATTGTTCATCGCAAGTGCTTCTAA
back to top