Gchil4293.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4293.t1
Unique Name	Gchil4293.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1918972..1920909 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708313.1
Preferred name	DNAJC11
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03575,ko:K09531
KEGG Pathway	ko03410,map03410
GOs	GO:0000003,GO:0001671,GO:0003006,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0008047,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009536,GO:0009628,GO:0009642,GO:0009791,GO:0009987,GO:0010228,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019867,GO:0022414,GO:0030150,GO:0030234,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032781,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0048608,GO:0048731,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0055085,GO:0055122,GO:0060589,GO:0060590,GO:0061024,GO:0061458,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098588,GO:0098772,GO:0098805,GO:1990542
Evalue	1.46e-77
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03110,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4293	Gchil4293	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1918972..1920909 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4293.t1.start1	Gchil4293.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1918972..1918974 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4293.t1.CDS1	Gchil4293.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1918972..1920909 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4293.t1.exon1	Gchil4293.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1918972..1920909 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4293.t1.stop1	Gchil4293.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1920907..1920909 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4293.t1	Gchil4293.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1918972..1920909 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1918972..1920909+
coding sequence from alignment at tig00004373_pilon:1918972..1920909+

mRNA sequence

>Gchil4293.t1 ID=Gchil4293.t1|Name=Gchil4293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=646bp
MTESREEIKEDLYTILKVPRDANEIDLRSSFRKLSQQFHPDKHIGEQAKA
TATDHFTRVKEAYEILSNNKFRRIYNEFGLDAARAAAMPGMELVPYNDLA
ERFRNESMGGNGGSGINTPRDAYFTVSNSIEPRVDATGLAVALEDGDFIT
TKNLAICTQVGIATVATAYVSQNNTVIVRYAAACQGSRYQSRSSGGAGEV
ALSFRRQIDPHMQTEITAHVPLEENQSVSYGLKTFRSLSQNMTGAFDVSY
DPGRKDLTTALTYTRSFNERCTASASWAYGAASGFAFSWRKNAYDEYLSE
ISSDHDHETELFGADTSELEEPSRGMWRQRISKLFQKLKYFVEPMGLRWT
ARWSVMDASVSCLVRRPIGLHAPLFEKCEPTGPGGGFVRARASLSVMGWE
MELGGGRKYVLADTAWTMCVAFGTLGVVWRLKMSRSGHRFNLPIVLYSAT
ADPKTATIAAITTSALVSAVQYLIVEPWQQRKDKNEREEAKSRRSDILHQ
GRQDAEAALNMMKQTVERIRSDEEKVEIEGKKGSGLIIKKAVYGVTRSTR
MMKFTGDGLQDREIELEAADVTDAVQCLVVNSALQVVSATKSTLPGFWDP
SAFGDKDDIILKVWYLFKTEKHECVIRDDEPIELPLSSHRVNEWS*

spliced messenger RNA

>Gchil4293.t1 ID=Gchil4293.t1|Name=Gchil4293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00004373_pilon:1918972..1920909+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAATCCAGGGAAGAGATAAAAGAAGATCTGTACACAATACTCAA
AGTTCCAAGAGATGCGAATGAAATTGATCTACGTTCTTCATTCCGTAAAT
TATCGCAGCAATTTCATCCCGATAAGCATATTGGTGAGCAAGCAAAGGCA
ACTGCAACAGATCATTTCACAAGAGTCAAGGAAGCGTATGAGATTCTTTC
GAATAACAAATTCAGACGTATTTATAATGAGTTTGGACTCGATGCTGCTC
GCGCAGCTGCAATGCCTGGGATGGAGCTTGTTCCTTATAACGATCTTGCA
GAACGTTTCAGAAATGAATCTATGGGGGGCAATGGCGGTTCAGGAATTAA
CACCCCAAGAGATGCCTATTTCACTGTTTCTAATTCTATAGAGCCTAGAG
TAGATGCTACTGGGCTTGCTGTTGCTTTAGAAGATGGGGATTTTATCACC
ACCAAGAACTTGGCTATTTGTACACAAGTCGGAATAGCCACGGTGGCTAC
TGCATATGTGTCACAGAACAACACTGTCATCGTGCGATATGCTGCGGCTT
GTCAGGGCTCCCGATATCAAAGCCGTTCTTCAGGGGGAGCGGGTGAGGTC
GCCCTGTCATTTAGACGACAGATTGATCCTCACATGCAAACAGAAATCAC
AGCTCATGTTCCACTTGAAGAGAATCAATCCGTATCTTACGGTCTCAAAA
CATTCCGTTCCCTTTCTCAGAATATGACTGGTGCGTTTGACGTTTCTTAT
GACCCTGGGCGAAAAGACCTAACCACTGCACTGACATATACAAGGTCGTT
TAATGAACGCTGCACGGCTAGCGCTTCTTGGGCATATGGCGCTGCTTCTG
GTTTCGCGTTTTCATGGCGAAAAAATGCTTATGATGAGTATCTTTCAGAA
ATTTCATCAGACCATGACCATGAAACTGAACTATTCGGTGCTGATACTTC
CGAACTCGAAGAACCTTCCCGGGGCATGTGGCGTCAAAGGATATCGAAAC
TTTTCCAGAAGCTAAAGTATTTTGTGGAGCCTATGGGTTTGCGATGGACT
GCTAGATGGAGCGTCATGGATGCGTCAGTATCTTGTCTTGTACGGCGCCC
CATCGGTTTGCACGCTCCTTTGTTCGAAAAATGTGAACCTACAGGACCTG
GTGGTGGTTTTGTCCGAGCCCGTGCCTCTCTGAGCGTAATGGGATGGGAA
ATGGAACTAGGTGGAGGGCGAAAATACGTTCTTGCGGATACGGCGTGGAC
AATGTGCGTGGCATTTGGAACTCTGGGCGTAGTGTGGAGACTGAAGATGA
GTAGAAGTGGCCACAGATTCAACCTACCCATCGTTCTTTATTCTGCGACA
GCCGATCCGAAGACGGCCACAATTGCTGCCATTACAACTTCAGCCCTCGT
GAGCGCCGTTCAGTACTTAATCGTAGAGCCGTGGCAGCAAAGAAAGGACA
AGAATGAACGTGAAGAAGCGAAATCCCGTCGATCAGATATTCTACATCAA
GGGCGCCAAGATGCGGAAGCGGCTCTAAACATGATGAAGCAGACAGTGGA
AAGAATTAGAAGCGATGAGGAGAAAGTCGAAATTGAAGGCAAGAAAGGCT
CTGGCCTGATCATCAAGAAGGCAGTGTACGGTGTCACAAGAAGTACAAGA
ATGATGAAATTCACAGGTGATGGTCTTCAAGATAGGGAAATTGAATTGGA
AGCTGCGGATGTAACGGATGCCGTTCAATGCCTTGTTGTGAATAGTGCCT
TGCAGGTTGTGTCTGCGACCAAGTCAACCCTACCAGGCTTCTGGGACCCC
AGTGCTTTCGGTGATAAAGACGATATAATCCTGAAGGTGTGGTATTTGTT
CAAGACAGAGAAGCACGAATGCGTTATCCGAGATGATGAGCCCATCGAAT
TACCTCTCTCTTCGCACCGAGTGAATGAATGGTCTTAA

protein sequence of Gchil4293.t1

>Gchil4293.t1 ID=Gchil4293.t1|Name=Gchil4293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=646bp
MTESREEIKEDLYTILKVPRDANEIDLRSSFRKLSQQFHPDKHIGEQAKA
TATDHFTRVKEAYEILSNNKFRRIYNEFGLDAARAAAMPGMELVPYNDLA
ERFRNESMGGNGGSGINTPRDAYFTVSNSIEPRVDATGLAVALEDGDFIT
TKNLAICTQVGIATVATAYVSQNNTVIVRYAAACQGSRYQSRSSGGAGEV
ALSFRRQIDPHMQTEITAHVPLEENQSVSYGLKTFRSLSQNMTGAFDVSY
DPGRKDLTTALTYTRSFNERCTASASWAYGAASGFAFSWRKNAYDEYLSE
ISSDHDHETELFGADTSELEEPSRGMWRQRISKLFQKLKYFVEPMGLRWT
ARWSVMDASVSCLVRRPIGLHAPLFEKCEPTGPGGGFVRARASLSVMGWE
MELGGGRKYVLADTAWTMCVAFGTLGVVWRLKMSRSGHRFNLPIVLYSAT
ADPKTATIAAITTSALVSAVQYLIVEPWQQRKDKNEREEAKSRRSDILHQ
GRQDAEAALNMMKQTVERIRSDEEKVEIEGKKGSGLIIKKAVYGVTRSTR
MMKFTGDGLQDREIELEAADVTDAVQCLVVNSALQVVSATKSTLPGFWDP
SAFGDKDDIILKVWYLFKTEKHECVIRDDEPIELPLSSHRVNEWS*

mRNA from alignment at tig00004373_pilon:1918972..1920909+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4293.t1 ID=Gchil4293.t1|Name=Gchil4293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00004373_pilon:1918972..1920909+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAATCCAGGGAAGAGATAAAAGAAGATCTGTACACAATACTCAA
AGTTCCAAGAGATGCGAATGAAATTGATCTACGTTCTTCATTCCGTAAAT
TATCGCAGCAATTTCATCCCGATAAGCATATTGGTGAGCAAGCAAAGGCA
ACTGCAACAGATCATTTCACAAGAGTCAAGGAAGCGTATGAGATTCTTTC
GAATAACAAATTCAGACGTATTTATAATGAGTTTGGACTCGATGCTGCTC
GCGCAGCTGCAATGCCTGGGATGGAGCTTGTTCCTTATAACGATCTTGCA
GAACGTTTCAGAAATGAATCTATGGGGGGCAATGGCGGTTCAGGAATTAA
CACCCCAAGAGATGCCTATTTCACTGTTTCTAATTCTATAGAGCCTAGAG
TAGATGCTACTGGGCTTGCTGTTGCTTTAGAAGATGGGGATTTTATCACC
ACCAAGAACTTGGCTATTTGTACACAAGTCGGAATAGCCACGGTGGCTAC
TGCATATGTGTCACAGAACAACACTGTCATCGTGCGATATGCTGCGGCTT
GTCAGGGCTCCCGATATCAAAGCCGTTCTTCAGGGGGAGCGGGTGAGGTC
GCCCTGTCATTTAGACGACAGATTGATCCTCACATGCAAACAGAAATCAC
AGCTCATGTTCCACTTGAAGAGAATCAATCCGTATCTTACGGTCTCAAAA
CATTCCGTTCCCTTTCTCAGAATATGACTGGTGCGTTTGACGTTTCTTAT
GACCCTGGGCGAAAAGACCTAACCACTGCACTGACATATACAAGGTCGTT
TAATGAACGCTGCACGGCTAGCGCTTCTTGGGCATATGGCGCTGCTTCTG
GTTTCGCGTTTTCATGGCGAAAAAATGCTTATGATGAGTATCTTTCAGAA
ATTTCATCAGACCATGACCATGAAACTGAACTATTCGGTGCTGATACTTC
CGAACTCGAAGAACCTTCCCGGGGCATGTGGCGTCAAAGGATATCGAAAC
TTTTCCAGAAGCTAAAGTATTTTGTGGAGCCTATGGGTTTGCGATGGACT
GCTAGATGGAGCGTCATGGATGCGTCAGTATCTTGTCTTGTACGGCGCCC
CATCGGTTTGCACGCTCCTTTGTTCGAAAAATGTGAACCTACAGGACCTG
GTGGTGGTTTTGTCCGAGCCCGTGCCTCTCTGAGCGTAATGGGATGGGAA
ATGGAACTAGGTGGAGGGCGAAAATACGTTCTTGCGGATACGGCGTGGAC
AATGTGCGTGGCATTTGGAACTCTGGGCGTAGTGTGGAGACTGAAGATGA
GTAGAAGTGGCCACAGATTCAACCTACCCATCGTTCTTTATTCTGCGACA
GCCGATCCGAAGACGGCCACAATTGCTGCCATTACAACTTCAGCCCTCGT
GAGCGCCGTTCAGTACTTAATCGTAGAGCCGTGGCAGCAAAGAAAGGACA
AGAATGAACGTGAAGAAGCGAAATCCCGTCGATCAGATATTCTACATCAA
GGGCGCCAAGATGCGGAAGCGGCTCTAAACATGATGAAGCAGACAGTGGA
AAGAATTAGAAGCGATGAGGAGAAAGTCGAAATTGAAGGCAAGAAAGGCT
CTGGCCTGATCATCAAGAAGGCAGTGTACGGTGTCACAAGAAGTACAAGA
ATGATGAAATTCACAGGTGATGGTCTTCAAGATAGGGAAATTGAATTGGA
AGCTGCGGATGTAACGGATGCCGTTCAATGCCTTGTTGTGAATAGTGCCT
TGCAGGTTGTGTCTGCGACCAAGTCAACCCTACCAGGCTTCTGGGACCCC
AGTGCTTTCGGTGATAAAGACGATATAATCCTGAAGGTGTGGTATTTGTT
CAAGACAGAGAAGCACGAATGCGTTATCCGAGATGATGAGCCCATCGAAT
TACCTCTCTCTTCGCACCGAGTGAATGAATGGTCTTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:1918972..1920909+

>Gchil4293.t1 ID=Gchil4293.t1|Name=Gchil4293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1938bp|location=Sequence derived from alignment at tig00004373_pilon:1918972..1920909+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAATCCAGGGAAGAGATAAAAGAAGATCTGTACACAATACTCAA
AGTTCCAAGAGATGCGAATGAAATTGATCTACGTTCTTCATTCCGTAAAT
TATCGCAGCAATTTCATCCCGATAAGCATATTGGTGAGCAAGCAAAGGCA
ACTGCAACAGATCATTTCACAAGAGTCAAGGAAGCGTATGAGATTCTTTC
GAATAACAAATTCAGACGTATTTATAATGAGTTTGGACTCGATGCTGCTC
GCGCAGCTGCAATGCCTGGGATGGAGCTTGTTCCTTATAACGATCTTGCA
GAACGTTTCAGAAATGAATCTATGGGGGGCAATGGCGGTTCAGGAATTAA
CACCCCAAGAGATGCCTATTTCACTGTTTCTAATTCTATAGAGCCTAGAG
TAGATGCTACTGGGCTTGCTGTTGCTTTAGAAGATGGGGATTTTATCACC
ACCAAGAACTTGGCTATTTGTACACAAGTCGGAATAGCCACGGTGGCTAC
TGCATATGTGTCACAGAACAACACTGTCATCGTGCGATATGCTGCGGCTT
GTCAGGGCTCCCGATATCAAAGCCGTTCTTCAGGGGGAGCGGGTGAGGTC
GCCCTGTCATTTAGACGACAGATTGATCCTCACATGCAAACAGAAATCAC
AGCTCATGTTCCACTTGAAGAGAATCAATCCGTATCTTACGGTCTCAAAA
CATTCCGTTCCCTTTCTCAGAATATGACTGGTGCGTTTGACGTTTCTTAT
GACCCTGGGCGAAAAGACCTAACCACTGCACTGACATATACAAGGTCGTT
TAATGAACGCTGCACGGCTAGCGCTTCTTGGGCATATGGCGCTGCTTCTG
GTTTCGCGTTTTCATGGCGAAAAAATGCTTATGATGAGTATCTTTCAGAA
ATTTCATCAGACCATGACCATGAAACTGAACTATTCGGTGCTGATACTTC
CGAACTCGAAGAACCTTCCCGGGGCATGTGGCGTCAAAGGATATCGAAAC
TTTTCCAGAAGCTAAAGTATTTTGTGGAGCCTATGGGTTTGCGATGGACT
GCTAGATGGAGCGTCATGGATGCGTCAGTATCTTGTCTTGTACGGCGCCC
CATCGGTTTGCACGCTCCTTTGTTCGAAAAATGTGAACCTACAGGACCTG
GTGGTGGTTTTGTCCGAGCCCGTGCCTCTCTGAGCGTAATGGGATGGGAA
ATGGAACTAGGTGGAGGGCGAAAATACGTTCTTGCGGATACGGCGTGGAC
AATGTGCGTGGCATTTGGAACTCTGGGCGTAGTGTGGAGACTGAAGATGA
GTAGAAGTGGCCACAGATTCAACCTACCCATCGTTCTTTATTCTGCGACA
GCCGATCCGAAGACGGCCACAATTGCTGCCATTACAACTTCAGCCCTCGT
GAGCGCCGTTCAGTACTTAATCGTAGAGCCGTGGCAGCAAAGAAAGGACA
AGAATGAACGTGAAGAAGCGAAATCCCGTCGATCAGATATTCTACATCAA
GGGCGCCAAGATGCGGAAGCGGCTCTAAACATGATGAAGCAGACAGTGGA
AAGAATTAGAAGCGATGAGGAGAAAGTCGAAATTGAAGGCAAGAAAGGCT
CTGGCCTGATCATCAAGAAGGCAGTGTACGGTGTCACAAGAAGTACAAGA
ATGATGAAATTCACAGGTGATGGTCTTCAAGATAGGGAAATTGAATTGGA
AGCTGCGGATGTAACGGATGCCGTTCAATGCCTTGTTGTGAATAGTGCCT
TGCAGGTTGTGTCTGCGACCAAGTCAACCCTACCAGGCTTCTGGGACCCC
AGTGCTTTCGGTGATAAAGACGATATAATCCTGAAGGTGTGGTATTTGTT
CAAGACAGAGAAGCACGAATGCGTTATCCGAGATGATGAGCCCATCGAAT
TACCTCTCTCTTCGCACCGAGTGAATGAATGGTCTTAA