Gchil4288.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4288.t1
Unique Name	Gchil4288.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1902602..1904482 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85982.XP_007318724.1
Preferred name	DBP6
PFAMs	DEAD,Helicase_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14807
GOs	GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360,GO:1990904
Evalue	2.17e-62
EggNOG OGs	COG0513@1\|root,KOG0350@2759\|Eukaryota,39BP1@33154\|Opisthokonta,3NVF5@4751\|Fungi,3UZAV@5204\|Basidiomycota,22654@155619\|Agaricomycetes
EC	3.6.4.13
Description	Belongs to the DEAD box helicase family
COG category	A
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4288	Gchil4288	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1902602..1904482 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4288.t1.stop1	Gchil4288.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1902602..1902604 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4288.t1.CDS1	Gchil4288.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1902602..1904482 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4288.t1.exon1	Gchil4288.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1902602..1904482 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4288.t1.start1	Gchil4288.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1904480..1904482 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4288.t1	Gchil4288.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1902602..1904482 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1902602..1904482-
coding sequence from alignment at tig00004373_pilon:1902602..1904482-

mRNA sequence

>Gchil4288.t1 ID=Gchil4288.t1|Name=Gchil4288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=627bp
MRSGHSEPERIQFELSSSRDDAQHSKVDDKLSNEKRAPSLDPRLQNVLAS
ELGIRRIFNMQEVLLSYILNGASRGRTGDIVLCAPTGSGKTLAYALPIVQ
DMLDRRMPRLRAIVAVPTRDLAAQVFSVFMALTKKFGILVVCALGSSSID
EEALTVPNAEILIATPGRLVDHINNGDYLNLGDVRYLVLDESDRLLEDSY
QEWIDVLIPSLGKQKQTFKEGERGCLMPRTSYGLLNIAIRPDISMRTTSS
YSGLSQPNVRKILASATQSRNPVRLYKLDLRDVCFFEPSDLKGNQEGTSN
MAVEKFTVPPTMNEYGWIIENVQQKPLALLQLLGWIPFASENLKATRRVA
EDRLISQGGTKLVFSNSVDSAHRLCRLLEICSYSLGRNGTVLEMSGTLSA
KRRKYVLETVRREISMNSEKAHNDNPAFAVIVCSDVLARGMDILAVDTVI
NYDIPAHISTYLHRAGRTARAGRKGSVFTLLIENQVRHFRAMVYEAMRDE
KKVRTIDMKIRGEKPSNVSLMTQSLGSLRQVMDSERHGALDHDDNLPKFM
LYALDHNRTSNPAFFDEQAEECELERTRFTSDGISQDESNEHKEAQNDNK
LHDLLFAQIGRNLLHPMSDGQNKAVD*

spliced messenger RNA

>Gchil4288.t1 ID=Gchil4288.t1|Name=Gchil4288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00004373_pilon:1902602..1904482- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTCGGGTCATTCAGAGCCGGAAAGAATCCAGTTCGAGTTGTCTTC
CTCAAGAGACGATGCACAGCATTCAAAAGTAGACGACAAACTATCAAACG
AAAAGCGGGCTCCCTCTCTGGACCCGCGTCTGCAGAATGTACTTGCCTCA
GAGCTTGGAATACGAAGAATATTTAATATGCAAGAAGTTCTTCTATCCTA
CATCCTCAATGGAGCATCTAGAGGCCGAACAGGTGATATTGTTTTGTGTG
CTCCAACAGGGAGTGGAAAAACTCTAGCGTATGCTTTGCCTATCGTACAA
GATATGCTTGACCGCAGAATGCCGCGTCTGCGGGCCATCGTTGCTGTTCC
GACGCGAGATCTTGCCGCTCAAGTGTTTTCTGTATTTATGGCTCTGACGA
AAAAGTTTGGCATACTTGTAGTTTGTGCCCTCGGTTCTTCTTCAATAGAT
GAAGAAGCACTAACCGTGCCAAACGCAGAGATTCTAATCGCGACACCAGG
ACGACTCGTTGATCATATCAACAATGGTGACTATCTGAATCTGGGTGATG
TAAGATATCTTGTTCTGGATGAATCTGACCGACTTCTTGAAGATTCGTAC
CAGGAATGGATAGATGTCTTGATCCCATCTTTAGGAAAACAAAAGCAAAC
TTTCAAAGAAGGGGAAAGAGGATGTCTGATGCCTCGCACATCGTATGGTT
TGCTGAACATTGCAATTAGGCCTGATATTTCCATGCGAACCACATCATCC
TATTCAGGCTTGTCGCAACCGAACGTGAGAAAGATTCTCGCGTCAGCGAC
GCAATCTCGAAATCCAGTGAGGCTGTACAAACTGGACCTGCGGGATGTTT
GCTTCTTTGAACCCAGTGATTTGAAAGGAAACCAAGAAGGAACGTCTAAC
ATGGCCGTAGAAAAGTTCACAGTGCCGCCTACAATGAATGAATACGGATG
GATTATAGAGAATGTTCAACAAAAGCCGTTGGCATTGTTGCAATTGTTGG
GTTGGATACCATTTGCCTCTGAAAATCTCAAGGCAACGCGACGTGTTGCC
GAAGATCGTTTGATTTCACAAGGGGGCACAAAACTTGTCTTCAGCAATTC
AGTAGACTCTGCTCACCGTCTTTGTAGACTCTTGGAGATTTGTTCATATT
CACTTGGGAGAAATGGGACAGTCTTGGAGATGTCTGGAACTTTATCGGCC
AAAAGGAGGAAATATGTTCTGGAAACGGTGCGAAGAGAGATTTCAATGAA
CTCAGAAAAAGCTCATAATGACAATCCTGCGTTCGCCGTGATAGTCTGCA
GTGACGTGCTTGCAAGAGGGATGGACATTTTGGCTGTGGACACCGTCATA
AACTATGACATTCCGGCTCACATCAGCACTTACTTGCACAGGGCGGGACG
AACGGCAAGAGCTGGTCGAAAAGGAAGTGTATTCACGTTGCTCATTGAAA
ACCAGGTGAGGCATTTTCGCGCTATGGTTTATGAGGCCATGAGGGACGAA
AAAAAGGTGCGGACTATAGACATGAAGATCCGAGGTGAGAAACCTTCCAA
TGTTTCACTCATGACACAATCACTCGGGTCTCTCCGCCAAGTAATGGACA
GCGAACGACATGGTGCCCTTGACCACGATGATAATCTACCCAAATTCATG
CTATACGCTCTCGATCACAATCGAACAAGCAATCCGGCGTTCTTCGATGA
ACAGGCGGAAGAATGTGAATTGGAGAGAACTCGCTTCACTTCAGACGGCA
TTTCTCAAGATGAATCAAACGAACACAAGGAAGCTCAGAATGATAACAAG
TTACATGATTTGTTATTTGCACAGATCGGGCGAAACCTACTTCATCCCAT
GAGTGATGGGCAAAATAAAGCTGTTGACTGA

protein sequence of Gchil4288.t1

>Gchil4288.t1 ID=Gchil4288.t1|Name=Gchil4288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=627bp
MRSGHSEPERIQFELSSSRDDAQHSKVDDKLSNEKRAPSLDPRLQNVLAS
ELGIRRIFNMQEVLLSYILNGASRGRTGDIVLCAPTGSGKTLAYALPIVQ
DMLDRRMPRLRAIVAVPTRDLAAQVFSVFMALTKKFGILVVCALGSSSID
EEALTVPNAEILIATPGRLVDHINNGDYLNLGDVRYLVLDESDRLLEDSY
QEWIDVLIPSLGKQKQTFKEGERGCLMPRTSYGLLNIAIRPDISMRTTSS
YSGLSQPNVRKILASATQSRNPVRLYKLDLRDVCFFEPSDLKGNQEGTSN
MAVEKFTVPPTMNEYGWIIENVQQKPLALLQLLGWIPFASENLKATRRVA
EDRLISQGGTKLVFSNSVDSAHRLCRLLEICSYSLGRNGTVLEMSGTLSA
KRRKYVLETVRREISMNSEKAHNDNPAFAVIVCSDVLARGMDILAVDTVI
NYDIPAHISTYLHRAGRTARAGRKGSVFTLLIENQVRHFRAMVYEAMRDE
KKVRTIDMKIRGEKPSNVSLMTQSLGSLRQVMDSERHGALDHDDNLPKFM
LYALDHNRTSNPAFFDEQAEECELERTRFTSDGISQDESNEHKEAQNDNK
LHDLLFAQIGRNLLHPMSDGQNKAVD*

mRNA from alignment at tig00004373_pilon:1902602..1904482-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4288.t1 ID=Gchil4288.t1|Name=Gchil4288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00004373_pilon:1902602..1904482- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTCGGGTCATTCAGAGCCGGAAAGAATCCAGTTCGAGTTGTCTTC
CTCAAGAGACGATGCACAGCATTCAAAAGTAGACGACAAACTATCAAACG
AAAAGCGGGCTCCCTCTCTGGACCCGCGTCTGCAGAATGTACTTGCCTCA
GAGCTTGGAATACGAAGAATATTTAATATGCAAGAAGTTCTTCTATCCTA
CATCCTCAATGGAGCATCTAGAGGCCGAACAGGTGATATTGTTTTGTGTG
CTCCAACAGGGAGTGGAAAAACTCTAGCGTATGCTTTGCCTATCGTACAA
GATATGCTTGACCGCAGAATGCCGCGTCTGCGGGCCATCGTTGCTGTTCC
GACGCGAGATCTTGCCGCTCAAGTGTTTTCTGTATTTATGGCTCTGACGA
AAAAGTTTGGCATACTTGTAGTTTGTGCCCTCGGTTCTTCTTCAATAGAT
GAAGAAGCACTAACCGTGCCAAACGCAGAGATTCTAATCGCGACACCAGG
ACGACTCGTTGATCATATCAACAATGGTGACTATCTGAATCTGGGTGATG
TAAGATATCTTGTTCTGGATGAATCTGACCGACTTCTTGAAGATTCGTAC
CAGGAATGGATAGATGTCTTGATCCCATCTTTAGGAAAACAAAAGCAAAC
TTTCAAAGAAGGGGAAAGAGGATGTCTGATGCCTCGCACATCGTATGGTT
TGCTGAACATTGCAATTAGGCCTGATATTTCCATGCGAACCACATCATCC
TATTCAGGCTTGTCGCAACCGAACGTGAGAAAGATTCTCGCGTCAGCGAC
GCAATCTCGAAATCCAGTGAGGCTGTACAAACTGGACCTGCGGGATGTTT
GCTTCTTTGAACCCAGTGATTTGAAAGGAAACCAAGAAGGAACGTCTAAC
ATGGCCGTAGAAAAGTTCACAGTGCCGCCTACAATGAATGAATACGGATG
GATTATAGAGAATGTTCAACAAAAGCCGTTGGCATTGTTGCAATTGTTGG
GTTGGATACCATTTGCCTCTGAAAATCTCAAGGCAACGCGACGTGTTGCC
GAAGATCGTTTGATTTCACAAGGGGGCACAAAACTTGTCTTCAGCAATTC
AGTAGACTCTGCTCACCGTCTTTGTAGACTCTTGGAGATTTGTTCATATT
CACTTGGGAGAAATGGGACAGTCTTGGAGATGTCTGGAACTTTATCGGCC
AAAAGGAGGAAATATGTTCTGGAAACGGTGCGAAGAGAGATTTCAATGAA
CTCAGAAAAAGCTCATAATGACAATCCTGCGTTCGCCGTGATAGTCTGCA
GTGACGTGCTTGCAAGAGGGATGGACATTTTGGCTGTGGACACCGTCATA
AACTATGACATTCCGGCTCACATCAGCACTTACTTGCACAGGGCGGGACG
AACGGCAAGAGCTGGTCGAAAAGGAAGTGTATTCACGTTGCTCATTGAAA
ACCAGGTGAGGCATTTTCGCGCTATGGTTTATGAGGCCATGAGGGACGAA
AAAAAGGTGCGGACTATAGACATGAAGATCCGAGGTGAGAAACCTTCCAA
TGTTTCACTCATGACACAATCACTCGGGTCTCTCCGCCAAGTAATGGACA
GCGAACGACATGGTGCCCTTGACCACGATGATAATCTACCCAAATTCATG
CTATACGCTCTCGATCACAATCGAACAAGCAATCCGGCGTTCTTCGATGA
ACAGGCGGAAGAATGTGAATTGGAGAGAACTCGCTTCACTTCAGACGGCA
TTTCTCAAGATGAATCAAACGAACACAAGGAAGCTCAGAATGATAACAAG
TTACATGATTTGTTATTTGCACAGATCGGGCGAAACCTACTTCATCCCAT
GAGTGATGGGCAAAATAAAGCTGTTGACTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1902602..1904482-

>Gchil4288.t1 ID=Gchil4288.t1|Name=Gchil4288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1881bp|location=Sequence derived from alignment at tig00004373_pilon:1902602..1904482- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTCGGGTCATTCAGAGCCGGAAAGAATCCAGTTCGAGTTGTCTTC
CTCAAGAGACGATGCACAGCATTCAAAAGTAGACGACAAACTATCAAACG
AAAAGCGGGCTCCCTCTCTGGACCCGCGTCTGCAGAATGTACTTGCCTCA
GAGCTTGGAATACGAAGAATATTTAATATGCAAGAAGTTCTTCTATCCTA
CATCCTCAATGGAGCATCTAGAGGCCGAACAGGTGATATTGTTTTGTGTG
CTCCAACAGGGAGTGGAAAAACTCTAGCGTATGCTTTGCCTATCGTACAA
GATATGCTTGACCGCAGAATGCCGCGTCTGCGGGCCATCGTTGCTGTTCC
GACGCGAGATCTTGCCGCTCAAGTGTTTTCTGTATTTATGGCTCTGACGA
AAAAGTTTGGCATACTTGTAGTTTGTGCCCTCGGTTCTTCTTCAATAGAT
GAAGAAGCACTAACCGTGCCAAACGCAGAGATTCTAATCGCGACACCAGG
ACGACTCGTTGATCATATCAACAATGGTGACTATCTGAATCTGGGTGATG
TAAGATATCTTGTTCTGGATGAATCTGACCGACTTCTTGAAGATTCGTAC
CAGGAATGGATAGATGTCTTGATCCCATCTTTAGGAAAACAAAAGCAAAC
TTTCAAAGAAGGGGAAAGAGGATGTCTGATGCCTCGCACATCGTATGGTT
TGCTGAACATTGCAATTAGGCCTGATATTTCCATGCGAACCACATCATCC
TATTCAGGCTTGTCGCAACCGAACGTGAGAAAGATTCTCGCGTCAGCGAC
GCAATCTCGAAATCCAGTGAGGCTGTACAAACTGGACCTGCGGGATGTTT
GCTTCTTTGAACCCAGTGATTTGAAAGGAAACCAAGAAGGAACGTCTAAC
ATGGCCGTAGAAAAGTTCACAGTGCCGCCTACAATGAATGAATACGGATG
GATTATAGAGAATGTTCAACAAAAGCCGTTGGCATTGTTGCAATTGTTGG
GTTGGATACCATTTGCCTCTGAAAATCTCAAGGCAACGCGACGTGTTGCC
GAAGATCGTTTGATTTCACAAGGGGGCACAAAACTTGTCTTCAGCAATTC
AGTAGACTCTGCTCACCGTCTTTGTAGACTCTTGGAGATTTGTTCATATT
CACTTGGGAGAAATGGGACAGTCTTGGAGATGTCTGGAACTTTATCGGCC
AAAAGGAGGAAATATGTTCTGGAAACGGTGCGAAGAGAGATTTCAATGAA
CTCAGAAAAAGCTCATAATGACAATCCTGCGTTCGCCGTGATAGTCTGCA
GTGACGTGCTTGCAAGAGGGATGGACATTTTGGCTGTGGACACCGTCATA
AACTATGACATTCCGGCTCACATCAGCACTTACTTGCACAGGGCGGGACG
AACGGCAAGAGCTGGTCGAAAAGGAAGTGTATTCACGTTGCTCATTGAAA
ACCAGGTGAGGCATTTTCGCGCTATGGTTTATGAGGCCATGAGGGACGAA
AAAAAGGTGCGGACTATAGACATGAAGATCCGAGGTGAGAAACCTTCCAA
TGTTTCACTCATGACACAATCACTCGGGTCTCTCCGCCAAGTAATGGACA
GCGAACGACATGGTGCCCTTGACCACGATGATAATCTACCCAAATTCATG
CTATACGCTCTCGATCACAATCGAACAAGCAATCCGGCGTTCTTCGATGA
ACAGGCGGAAGAATGTGAATTGGAGAGAACTCGCTTCACTTCAGACGGCA
TTTCTCAAGATGAATCAAACGAACACAAGGAAGCTCAGAATGATAACAAG
TTACATGATTTGTTATTTGCACAGATCGGGCGAAACCTACTTCATCCCAT
GAGTGATGGGCAAAATAAAGCTGTTGACTGA