Gchil4283.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4283.t1
Unique Name	Gchil4283.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1875463..1877109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_18727T0
Preferred name	ubx2
PFAMs	Thioredoxin_7,UBA_4,UBX
Max annot lvl	4751\|Fungi
KEGG rclass	RC00029
KEGG ko	ko:K00006
KEGG Reaction	R00842
KEGG Pathway	ko00564,ko01110,ko04011,map00564,map01110,map04011
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032182,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Evalue	3.26e-09
EggNOG OGs	KOG1364@1\|root,KOG1364@2759\|Eukaryota,38E6Y@33154\|Opisthokonta,3NVHA@4751\|Fungi
EC	1.1.1.8
Description	Ubx domain-containing protein
COG category	O
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4283	Gchil4283	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1875463..1877109 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4283.t1.start1	Gchil4283.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1875463..1875465 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4283.t1.CDS1	Gchil4283.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1875463..1877109 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4283.t1.exon1	Gchil4283.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1875463..1877109 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4283.t1.stop1	Gchil4283.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1877107..1877109 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4283.t1	Gchil4283.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1875463..1877109 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1875463..1877109+
coding sequence from alignment at tig00004373_pilon:1875463..1877109+

mRNA sequence

>Gchil4283.t1 ID=Gchil4283.t1|Name=Gchil4283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp
MQPDQKDHSSSAAQTTDPQSTPPLPPLALGSAASRASAPASAQASAQASA
PAPASAPASAPASAPASAPASAPASASPPCSTPVPPPLPPPPAPLVPVPE
PTEPVVHSFIGTLDSLQRTAQRQQKWPLIMILPALSPSSAPSSFSATRPA
WGPNALHRTPLLQTTRYIDQNVILWRRTTGSSDAERYTAFFPTDGLPHIA
LLDPRSGERLCVWGNVDGANMDSNRISDQLWSDVQEGLIEFLESHSLEDG
ALGPLHTPNKPWAVRTRRISQGDKQMPSTSAFDDEEAAVAAAIKASLEEA
AAVNGVFDNGADSDMDRSDDTGSTDVTPTLDDYEPSASSNDGEGDRTDDV
DLDLTMASQSIPRAASRPILIPQRRRETLPSSVESLSSSYIDRMESSFRS
SANPELAEIRRLREQQDAELARSLQEDRERERKEHAEIQRKAVVKEHMLN
AAARLSDEPAEGSNCLTIAIRLGGGRRITRRFNHSDLLQNVADFVIASTG
ILALAKAEPCLALKTAGPPLRRVSWQTRLSDLGLSSRTMFTLNEAVLL*

spliced messenger RNA

>Gchil4283.t1 ID=Gchil4283.t1|Name=Gchil4283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00004373_pilon:1875463..1877109+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGACCAAAAAGACCACAGTTCGTCCGCTGCACAAACCACCGA
CCCACAGAGCACTCCTCCTCTTCCTCCTCTAGCTCTTGGTTCGGCTGCCT
CTCGGGCATCGGCTCCGGCATCGGCTCAGGCATCAGCTCAGGCATCAGCT
CCCGCACCGGCTTCTGCACCAGCTTCTGCACCAGCTTCTGCACCAGCTTC
TGCACCAGCTTCTGCACCGGCTTCTGCATCGCCTCCATGTTCAACTCCTG
TGCCACCGCCACTCCCGCCACCACCGGCTCCTCTGGTACCTGTTCCGGAA
CCCACCGAACCCGTCGTCCACAGCTTCATAGGCACCTTGGACTCCCTACA
ACGAACTGCACAGCGTCAACAGAAATGGCCGCTTATCATGATACTACCTG
CGCTCTCACCTTCGTCCGCTCCGTCTTCGTTTTCAGCCACGCGCCCGGCA
TGGGGCCCTAATGCCCTTCACCGCACCCCCCTTCTCCAAACCACCCGTTA
CATCGACCAGAACGTAATCTTGTGGCGCCGCACCACTGGTTCGTCAGATG
CGGAGCGTTACACCGCATTTTTCCCAACTGACGGTCTTCCGCACATTGCA
CTACTCGATCCTAGGTCTGGCGAACGACTTTGCGTCTGGGGAAACGTTGA
TGGGGCCAACATGGACAGCAATCGCATTTCTGACCAGTTGTGGTCTGACG
TGCAGGAGGGCCTGATTGAATTCCTAGAGTCACACAGTCTGGAAGACGGC
GCCCTTGGACCGTTGCACACCCCGAACAAGCCTTGGGCTGTGCGAACCAG
GCGCATCAGTCAAGGGGATAAACAGATGCCTAGCACTTCCGCCTTCGATG
ATGAAGAAGCTGCTGTAGCAGCCGCAATAAAAGCTTCCTTGGAGGAAGCC
GCTGCAGTAAATGGTGTGTTTGACAATGGTGCTGACTCTGATATGGACAG
GTCAGATGACACAGGCAGCACTGATGTTACCCCAACCCTGGACGACTATG
AGCCTTCCGCCAGCTCGAATGATGGCGAAGGCGACCGCACTGATGACGTT
GACCTAGACCTCACAATGGCTTCGCAATCTATCCCTCGTGCTGCGAGCAG
ACCCATTCTCATTCCCCAGCGTCGCAGAGAGACGCTGCCTTCATCCGTTG
AGTCTCTGTCATCATCTTACATTGATAGAATGGAATCAAGCTTTCGCTCG
TCCGCAAACCCGGAGCTAGCTGAGATTCGCCGTTTGAGGGAACAGCAGGA
TGCGGAGCTTGCACGGTCCTTACAGGAAGACCGCGAGCGAGAACGTAAGG
AGCATGCTGAGATCCAGCGAAAGGCAGTCGTGAAAGAGCATATGCTGAAT
GCGGCGGCTCGTTTATCGGATGAACCTGCGGAGGGCAGTAACTGTCTCAC
AATAGCAATCCGACTGGGTGGTGGAAGAAGAATCACTCGGAGGTTTAATC
ACAGTGACCTATTACAAAACGTCGCTGATTTTGTTATCGCTAGTACTGGA
ATTTTGGCCCTGGCGAAGGCCGAGCCCTGTCTAGCATTGAAGACGGCTGG
ACCACCTCTTAGGCGGGTTTCTTGGCAGACGAGGCTTAGTGATCTTGGTC
TGAGCAGTCGGACCATGTTCACACTGAATGAAGCCGTGCTTTTGTGA

protein sequence of Gchil4283.t1

>Gchil4283.t1 ID=Gchil4283.t1|Name=Gchil4283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=549bp
MQPDQKDHSSSAAQTTDPQSTPPLPPLALGSAASRASAPASAQASAQASA
PAPASAPASAPASAPASAPASAPASASPPCSTPVPPPLPPPPAPLVPVPE
PTEPVVHSFIGTLDSLQRTAQRQQKWPLIMILPALSPSSAPSSFSATRPA
WGPNALHRTPLLQTTRYIDQNVILWRRTTGSSDAERYTAFFPTDGLPHIA
LLDPRSGERLCVWGNVDGANMDSNRISDQLWSDVQEGLIEFLESHSLEDG
ALGPLHTPNKPWAVRTRRISQGDKQMPSTSAFDDEEAAVAAAIKASLEEA
AAVNGVFDNGADSDMDRSDDTGSTDVTPTLDDYEPSASSNDGEGDRTDDV
DLDLTMASQSIPRAASRPILIPQRRRETLPSSVESLSSSYIDRMESSFRS
SANPELAEIRRLREQQDAELARSLQEDRERERKEHAEIQRKAVVKEHMLN
AAARLSDEPAEGSNCLTIAIRLGGGRRITRRFNHSDLLQNVADFVIASTG
ILALAKAEPCLALKTAGPPLRRVSWQTRLSDLGLSSRTMFTLNEAVLL*

mRNA from alignment at tig00004373_pilon:1875463..1877109+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4283.t1 ID=Gchil4283.t1|Name=Gchil4283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00004373_pilon:1875463..1877109+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCCGACCAAAAAGACCACAGTTCGTCCGCTGCACAAACCACCGA
CCCACAGAGCACTCCTCCTCTTCCTCCTCTAGCTCTTGGTTCGGCTGCCT
CTCGGGCATCGGCTCCGGCATCGGCTCAGGCATCAGCTCAGGCATCAGCT
CCCGCACCGGCTTCTGCACCAGCTTCTGCACCAGCTTCTGCACCAGCTTC
TGCACCAGCTTCTGCACCGGCTTCTGCATCGCCTCCATGTTCAACTCCTG
TGCCACCGCCACTCCCGCCACCACCGGCTCCTCTGGTACCTGTTCCGGAA
CCCACCGAACCCGTCGTCCACAGCTTCATAGGCACCTTGGACTCCCTACA
ACGAACTGCACAGCGTCAACAGAAATGGCCGCTTATCATGATACTACCTG
CGCTCTCACCTTCGTCCGCTCCGTCTTCGTTTTCAGCCACGCGCCCGGCA
TGGGGCCCTAATGCCCTTCACCGCACCCCCCTTCTCCAAACCACCCGTTA
CATCGACCAGAACGTAATCTTGTGGCGCCGCACCACTGGTTCGTCAGATG
CGGAGCGTTACACCGCATTTTTCCCAACTGACGGTCTTCCGCACATTGCA
CTACTCGATCCTAGGTCTGGCGAACGACTTTGCGTCTGGGGAAACGTTGA
TGGGGCCAACATGGACAGCAATCGCATTTCTGACCAGTTGTGGTCTGACG
TGCAGGAGGGCCTGATTGAATTCCTAGAGTCACACAGTCTGGAAGACGGC
GCCCTTGGACCGTTGCACACCCCGAACAAGCCTTGGGCTGTGCGAACCAG
GCGCATCAGTCAAGGGGATAAACAGATGCCTAGCACTTCCGCCTTCGATG
ATGAAGAAGCTGCTGTAGCAGCCGCAATAAAAGCTTCCTTGGAGGAAGCC
GCTGCAGTAAATGGTGTGTTTGACAATGGTGCTGACTCTGATATGGACAG
GTCAGATGACACAGGCAGCACTGATGTTACCCCAACCCTGGACGACTATG
AGCCTTCCGCCAGCTCGAATGATGGCGAAGGCGACCGCACTGATGACGTT
GACCTAGACCTCACAATGGCTTCGCAATCTATCCCTCGTGCTGCGAGCAG
ACCCATTCTCATTCCCCAGCGTCGCAGAGAGACGCTGCCTTCATCCGTTG
AGTCTCTGTCATCATCTTACATTGATAGAATGGAATCAAGCTTTCGCTCG
TCCGCAAACCCGGAGCTAGCTGAGATTCGCCGTTTGAGGGAACAGCAGGA
TGCGGAGCTTGCACGGTCCTTACAGGAAGACCGCGAGCGAGAACGTAAGG
AGCATGCTGAGATCCAGCGAAAGGCAGTCGTGAAAGAGCATATGCTGAAT
GCGGCGGCTCGTTTATCGGATGAACCTGCGGAGGGCAGTAACTGTCTCAC
AATAGCAATCCGACTGGGTGGTGGAAGAAGAATCACTCGGAGGTTTAATC
ACAGTGACCTATTACAAAACGTCGCTGATTTTGTTATCGCTAGTACTGGA
ATTTTGGCCCTGGCGAAGGCCGAGCCCTGTCTAGCATTGAAGACGGCTGG
ACCACCTCTTAGGCGGGTTTCTTGGCAGACGAGGCTTAGTGATCTTGGTC
TGAGCAGTCGGACCATGTTCACACTGAATGAAGCCGTGCTTTTGTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1875463..1877109+

>Gchil4283.t1 ID=Gchil4283.t1|Name=Gchil4283.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00004373_pilon:1875463..1877109+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCCGACCAAAAAGACCACAGTTCGTCCGCTGCACAAACCACCGA
CCCACAGAGCACTCCTCCTCTTCCTCCTCTAGCTCTTGGTTCGGCTGCCT
CTCGGGCATCGGCTCCGGCATCGGCTCAGGCATCAGCTCAGGCATCAGCT
CCCGCACCGGCTTCTGCACCAGCTTCTGCACCAGCTTCTGCACCAGCTTC
TGCACCAGCTTCTGCACCGGCTTCTGCATCGCCTCCATGTTCAACTCCTG
TGCCACCGCCACTCCCGCCACCACCGGCTCCTCTGGTACCTGTTCCGGAA
CCCACCGAACCCGTCGTCCACAGCTTCATAGGCACCTTGGACTCCCTACA
ACGAACTGCACAGCGTCAACAGAAATGGCCGCTTATCATGATACTACCTG
CGCTCTCACCTTCGTCCGCTCCGTCTTCGTTTTCAGCCACGCGCCCGGCA
TGGGGCCCTAATGCCCTTCACCGCACCCCCCTTCTCCAAACCACCCGTTA
CATCGACCAGAACGTAATCTTGTGGCGCCGCACCACTGGTTCGTCAGATG
CGGAGCGTTACACCGCATTTTTCCCAACTGACGGTCTTCCGCACATTGCA
CTACTCGATCCTAGGTCTGGCGAACGACTTTGCGTCTGGGGAAACGTTGA
TGGGGCCAACATGGACAGCAATCGCATTTCTGACCAGTTGTGGTCTGACG
TGCAGGAGGGCCTGATTGAATTCCTAGAGTCACACAGTCTGGAAGACGGC
GCCCTTGGACCGTTGCACACCCCGAACAAGCCTTGGGCTGTGCGAACCAG
GCGCATCAGTCAAGGGGATAAACAGATGCCTAGCACTTCCGCCTTCGATG
ATGAAGAAGCTGCTGTAGCAGCCGCAATAAAAGCTTCCTTGGAGGAAGCC
GCTGCAGTAAATGGTGTGTTTGACAATGGTGCTGACTCTGATATGGACAG
GTCAGATGACACAGGCAGCACTGATGTTACCCCAACCCTGGACGACTATG
AGCCTTCCGCCAGCTCGAATGATGGCGAAGGCGACCGCACTGATGACGTT
GACCTAGACCTCACAATGGCTTCGCAATCTATCCCTCGTGCTGCGAGCAG
ACCCATTCTCATTCCCCAGCGTCGCAGAGAGACGCTGCCTTCATCCGTTG
AGTCTCTGTCATCATCTTACATTGATAGAATGGAATCAAGCTTTCGCTCG
TCCGCAAACCCGGAGCTAGCTGAGATTCGCCGTTTGAGGGAACAGCAGGA
TGCGGAGCTTGCACGGTCCTTACAGGAAGACCGCGAGCGAGAACGTAAGG
AGCATGCTGAGATCCAGCGAAAGGCAGTCGTGAAAGAGCATATGCTGAAT
GCGGCGGCTCGTTTATCGGATGAACCTGCGGAGGGCAGTAACTGTCTCAC
AATAGCAATCCGACTGGGTGGTGGAAGAAGAATCACTCGGAGGTTTAATC
ACAGTGACCTATTACAAAACGTCGCTGATTTTGTTATCGCTAGTACTGGA
ATTTTGGCCCTGGCGAAGGCCGAGCCCTGTCTAGCATTGAAGACGGCTGG
ACCACCTCTTAGGCGGGTTTCTTGGCAGACGAGGCTTAGTGATCTTGGTC
TGAGCAGTCGGACCATGTTCACACTGAATGAAGCCGTGCTTTTGTGA