Gchil4277.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4277.t1
Unique NameGchil4277.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length659
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1794975..1797133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT308CT
PFAMsAbhydrolase_1,Abhydrolase_6
Max annot lvl2759|Eukaryota
Evalue7.63e-63
EggNOG OGsCOG0596@1|root,KOG1454@2759|Eukaryota
Descriptionregulation of endocannabinoid signaling pathway
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4277Gchil4277Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1794975..1797133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4277.t1Gchil4277.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1794975..1797133 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4277.t1.stop1Gchil4277.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1794975..1794977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4277.t1.CDS1Gchil4277.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1794975..1795092 -
Gchil4277.t1.CDS2Gchil4277.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1795199..1795694 -
Gchil4277.t1.CDS3Gchil4277.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1795771..1797133 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4277.t1.exon1Gchil4277.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1794975..1795092 -
Gchil4277.t1.exon2Gchil4277.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1795199..1795694 -
Gchil4277.t1.exon3Gchil4277.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1795771..1797133 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4277.t1.intron1Gchil4277.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1795093..1795198 -
Gchil4277.t1.intron2Gchil4277.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1795695..1795770 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4277.t1.start1Gchil4277.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1797131..1797133 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4277.t1 ID=Gchil4277.t1|Name=Gchil4277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=659bp
MKSQPVFVSSFLGTVFDINVTKNDSKVICMSSSLKQAPNPKPRRSVVWFR
EGDLRVEHHPGLQAAISQTPEALAPLLVCTPKTSLRTLQAAKRMQRELNE
IGSHLVVRFADDEAKGVIEFVKQYQADNVYVHMDVEHEARAVVREVANET
NELAEIRTWNSSLLEWGELTADLLKDMPDEYPKFLKWKKRPNTSKSDGLP
KAQNLHRLLGPEQKECLLHAVTKKVVETRDINEERKNFDSRFEKDQLHVK
AIKSEPDSDGYGEGVVRRFLETSDAYEVSDPGRSIAEVLHQGALPHNRIC
EIVHEHERRNGRLWRPIYREGAKQVLRLLEAKEFATMLARRDVSLGYTVD
GEHEAKFWKWRGYLVRYIDEGKEHSLRGKPPLLLIHGFGASSQHYKRSIR
ELKNHYHVYALDLVGFGRSEKPPTQYTQAFWECVIWDFVEKVVQQPVFVA
GNSIGGYFACAFGADAFQSYCRGVCLINAAGKLEDLNSQKVESAPKESLI
QSVVKNSSFARMFAATFLLNNLRGRIDKTLKLVYPTNPDAADKPLFDEIR
RNSLDFSAASVLASGLILPPPRSLSQLLNKFEGPLMVFQGELDPLNNAKG
RADTIQQQYPDARVVRVQAGHCPHEEVSDIFVDEIIQWMDAECTKVQSRN
HDSTLASS*
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spliced messenger RNA

>Gchil4277.t1 ID=Gchil4277.t1|Name=Gchil4277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004373_pilon:1794975..1797133- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGCCAACCCGTGTTCGTCTCTAGTTTCCTGGGAACAGTGTTTGA
CATCAATGTTACCAAAAATGACTCAAAGGTTATTTGTATGTCTTCCAGCC
TCAAGCAAGCTCCCAACCCCAAACCCCGTCGTTCCGTCGTATGGTTTCGG
GAGGGTGACTTGAGAGTTGAGCACCACCCTGGTTTACAAGCTGCTATTTC
ACAGACTCCTGAAGCATTGGCTCCTCTGCTTGTTTGCACACCAAAGACCA
GTCTTCGAACGCTCCAGGCTGCCAAGAGGATGCAGAGAGAACTGAATGAG
ATAGGTTCCCACCTTGTAGTGCGGTTCGCGGACGACGAGGCTAAAGGAGT
CATTGAATTCGTTAAGCAGTATCAAGCGGATAACGTGTACGTGCACATGG
ATGTGGAACACGAAGCAAGGGCTGTCGTGCGTGAAGTGGCCAATGAAACC
AATGAGTTGGCAGAGATTCGAACGTGGAATTCTAGCTTGTTAGAGTGGGG
TGAACTCACGGCTGATTTACTGAAAGACATGCCGGATGAATACCCAAAGT
TTCTGAAATGGAAGAAGAGGCCAAACACTTCCAAGAGCGATGGCCTTCCA
AAGGCACAGAATCTTCACCGCTTGCTCGGCCCTGAGCAAAAAGAATGTCT
TCTGCATGCGGTAACCAAGAAGGTAGTAGAAACCCGGGATATAAATGAGG
AACGTAAGAATTTTGACTCTAGATTTGAGAAAGACCAGCTCCATGTGAAG
GCGATTAAATCGGAACCGGACAGCGATGGATACGGAGAGGGTGTGGTCAG
AAGATTTCTGGAAACTTCGGACGCCTACGAGGTTTCTGACCCCGGTCGAT
CTATTGCCGAGGTCCTCCATCAAGGTGCACTACCCCATAACAGGATATGC
GAGATTGTCCATGAGCATGAAAGACGGAACGGGCGGTTATGGAGACCTAT
CTATCGTGAGGGGGCAAAGCAAGTCCTTCGTCTCTTGGAAGCTAAGGAGT
TTGCCACAATGTTGGCCAGGAGGGATGTTTCTCTTGGCTATACGGTCGAT
GGCGAACATGAAGCTAAATTTTGGAAGTGGCGAGGTTATTTGGTGCGTTA
TATCGATGAAGGGAAAGAACACAGTTTACGAGGTAAACCGCCGCTGCTTT
TAATTCATGGATTTGGGGCAAGCTCTCAACACTACAAGAGAAGTATTCGA
GAATTGAAGAACCACTATCATGTTTATGCGTTGGATTTAGTTGGGTTTGG
GAGATCAGAGAAGCCACCAACTCAGTACACACAAGCATTCTGGGAGTGCG
TGATATGGGACTTTGTTGAAAAAGTTGTTCAGCAACCCGTTTTCGTTGCA
GGGAACAGCATTGGTGGTTATTTCGCATGCGCTTTTGGAGCAGATGCATT
TCAATCTTACTGCAGAGGGGTTTGTCTGATCAACGCAGCCGGGAAGCTAG
AAGACTTGAACTCACAGAAAGTGGAAAGTGCTCCGAAGGAGTCTTTGATT
CAATCAGTCGTGAAGAATTCGAGCTTTGCGCGAATGTTTGCGGCGACTTT
TCTCCTGAACAATTTGAGGGGCCGAATTGACAAAACACTGAAGCTCGTGT
ATCCAACCAATCCTGATGCAGCCGATAAACCACTATTCGATGAAATAAGA
AGGAACTCGTTGGATTTCAGCGCCGCAAGTGTCCTCGCTAGTGGGCTTAT
ATTGCCACCCCCGCGCTCTCTTAGCCAGCTTCTCAATAAGTTTGAAGGAC
CGCTGATGGTGTTTCAGGGTGAACTCGATCCATTGAACAATGCCAAAGGA
CGAGCGGACACCATACAACAACAGTATCCCGATGCACGAGTTGTTCGAGT
GCAAGCAGGGCATTGTCCGCATGAGGAAGTCTCGGACATTTTCGTTGACG
AAATCATCCAGTGGATGGATGCGGAGTGCACAAAAGTCCAAAGCAGAAAC
CACGATTCCACTTTAGCGAGCTCGTAG
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protein sequence of Gchil4277.t1

>Gchil4277.t1 ID=Gchil4277.t1|Name=Gchil4277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=659bp
MKSQPVFVSSFLGTVFDINVTKNDSKVICMSSSLKQAPNPKPRRSVVWFR
EGDLRVEHHPGLQAAISQTPEALAPLLVCTPKTSLRTLQAAKRMQRELNE
IGSHLVVRFADDEAKGVIEFVKQYQADNVYVHMDVEHEARAVVREVANET
NELAEIRTWNSSLLEWGELTADLLKDMPDEYPKFLKWKKRPNTSKSDGLP
KAQNLHRLLGPEQKECLLHAVTKKVVETRDINEERKNFDSRFEKDQLHVK
AIKSEPDSDGYGEGVVRRFLETSDAYEVSDPGRSIAEVLHQGALPHNRIC
EIVHEHERRNGRLWRPIYREGAKQVLRLLEAKEFATMLARRDVSLGYTVD
GEHEAKFWKWRGYLVRYIDEGKEHSLRGKPPLLLIHGFGASSQHYKRSIR
ELKNHYHVYALDLVGFGRSEKPPTQYTQAFWECVIWDFVEKVVQQPVFVA
GNSIGGYFACAFGADAFQSYCRGVCLINAAGKLEDLNSQKVESAPKESLI
QSVVKNSSFARMFAATFLLNNLRGRIDKTLKLVYPTNPDAADKPLFDEIR
RNSLDFSAASVLASGLILPPPRSLSQLLNKFEGPLMVFQGELDPLNNAKG
RADTIQQQYPDARVVRVQAGHCPHEEVSDIFVDEIIQWMDAECTKVQSRN
HDSTLASS*
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mRNA from alignment at tig00004373_pilon:1794975..1797133-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4277.t1 ID=Gchil4277.t1|Name=Gchil4277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2159bp|location=Sequence derived from alignment at tig00004373_pilon:1794975..1797133- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGCCAACCCGTGTTCGTCTCTAGTTTCCTGGGAACAGTGTTTGA
CATCAATGTTACCAAAAATGACTCAAAGGTTATTTGTATGTCTTCCAGCC
TCAAGCAAGCTCCCAACCCCAAACCCCGTCGTTCCGTCGTATGGTTTCGG
GAGGGTGACTTGAGAGTTGAGCACCACCCTGGTTTACAAGCTGCTATTTC
ACAGACTCCTGAAGCATTGGCTCCTCTGCTTGTTTGCACACCAAAGACCA
GTCTTCGAACGCTCCAGGCTGCCAAGAGGATGCAGAGAGAACTGAATGAG
ATAGGTTCCCACCTTGTAGTGCGGTTCGCGGACGACGAGGCTAAAGGAGT
CATTGAATTCGTTAAGCAGTATCAAGCGGATAACGTGTACGTGCACATGG
ATGTGGAACACGAAGCAAGGGCTGTCGTGCGTGAAGTGGCCAATGAAACC
AATGAGTTGGCAGAGATTCGAACGTGGAATTCTAGCTTGTTAGAGTGGGG
TGAACTCACGGCTGATTTACTGAAAGACATGCCGGATGAATACCCAAAGT
TTCTGAAATGGAAGAAGAGGCCAAACACTTCCAAGAGCGATGGCCTTCCA
AAGGCACAGAATCTTCACCGCTTGCTCGGCCCTGAGCAAAAAGAATGTCT
TCTGCATGCGGTAACCAAGAAGGTAGTAGAAACCCGGGATATAAATGAGG
AACGTAAGAATTTTGACTCTAGATTTGAGAAAGACCAGCTCCATGTGAAG
GCGATTAAATCGGAACCGGACAGCGATGGATACGGAGAGGGTGTGGTCAG
AAGATTTCTGGAAACTTCGGACGCCTACGAGGTTTCTGACCCCGGTCGAT
CTATTGCCGAGGTCCTCCATCAAGGTGCACTACCCCATAACAGGATATGC
GAGATTGTCCATGAGCATGAAAGACGGAACGGGCGGTTATGGAGACCTAT
CTATCGTGAGGGGGCAAAGCAAGTCCTTCGTCTCTTGGAAGCTAAGGAGT
TTGCCACAATGTTGGCCAGGAGGGATGTTTCTCTTGGCTATACGGTCGAT
GGCGAACATGAAGCTAAATTTTGGAAGTGGCGAGGTTATTTGGTGCGTTA
TATCGATGAAGGGAAAGAACACAGTTTACGAGGTAAACCGCCGCTGCTTT
TAATTCATGGATTTGGGGCAAGCTCTCAACACTACAAGAGAAGTATTCGA
GAATTGAAGAACCACTATCATGTTTATGCGTTGGATTTAGTTGGGTTTGG
GAGATCAGAGAAGCCACCAACTCAGTACACACAAGCATTCTGGGAGTGCG
TGATATGGGACTTTGTTGAAAAAGTTGTTCAGCAACCCGTTTTCGTTGCA
GGGAACAGCATTGGTAAGTGAAAATATCTATACTTCAATGTATAGGCATA
TTCTAACTAATATACTTCCTTGCGTATATTGGCAAACAGGTGGTTATTTC
GCATGCGCTTTTGGAGCAGATGCATTTCAATCTTACTGCAGAGGGGTTTG
TCTGATCAACGCAGCCGGGAAGCTAGAAGACTTGAACTCACAGAAAGTGG
AAAGTGCTCCGAAGGAGTCTTTGATTCAATCAGTCGTGAAGAATTCGAGC
TTTGCGCGAATGTTTGCGGCGACTTTTCTCCTGAACAATTTGAGGGGCCG
AATTGACAAAACACTGAAGCTCGTGTATCCAACCAATCCTGATGCAGCCG
ATAAACCACTATTCGATGAAATAAGAAGGAACTCGTTGGATTTCAGCGCC
GCAAGTGTCCTCGCTAGTGGGCTTATATTGCCACCCCCGCGCTCTCTTAG
CCAGCTTCTCAATAAGTTTGAAGGACCGCTGATGGTGTTTCAGGGTGAAC
TCGATCCATTGAACAATGCCAAAGGACGAGCGGACACCATACAACAACAG
TATCCCGATGCACGAGTTGTTCGAGTGCAAGCAGGGTGAGTTGATGAGGA
CGATTTTCACTGTTGAACAGCCACTTGAATCCAATCTAACCTTGTCTTCT
TTTTTTCTCACGCACTTCCAAATCGACCACTCCAACGACAGGCATTGTCC
GCATGAGGAAGTCTCGGACATTTTCGTTGACGAAATCATCCAGTGGATGG
ATGCGGAGTGCACAAAAGTCCAAAGCAGAAACCACGATTCCACTTTAGCG
AGCTCGTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1794975..1797133-

>Gchil4277.t1 ID=Gchil4277.t1|Name=Gchil4277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1977bp|location=Sequence derived from alignment at tig00004373_pilon:1794975..1797133- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGCCAACCCGTGTTCGTCTCTAGTTTCCTGGGAACAGTGTTTGA
CATCAATGTTACCAAAAATGACTCAAAGGTTATTTGTATGTCTTCCAGCC
TCAAGCAAGCTCCCAACCCCAAACCCCGTCGTTCCGTCGTATGGTTTCGG
GAGGGTGACTTGAGAGTTGAGCACCACCCTGGTTTACAAGCTGCTATTTC
ACAGACTCCTGAAGCATTGGCTCCTCTGCTTGTTTGCACACCAAAGACCA
GTCTTCGAACGCTCCAGGCTGCCAAGAGGATGCAGAGAGAACTGAATGAG
ATAGGTTCCCACCTTGTAGTGCGGTTCGCGGACGACGAGGCTAAAGGAGT
CATTGAATTCGTTAAGCAGTATCAAGCGGATAACGTGTACGTGCACATGG
ATGTGGAACACGAAGCAAGGGCTGTCGTGCGTGAAGTGGCCAATGAAACC
AATGAGTTGGCAGAGATTCGAACGTGGAATTCTAGCTTGTTAGAGTGGGG
TGAACTCACGGCTGATTTACTGAAAGACATGCCGGATGAATACCCAAAGT
TTCTGAAATGGAAGAAGAGGCCAAACACTTCCAAGAGCGATGGCCTTCCA
AAGGCACAGAATCTTCACCGCTTGCTCGGCCCTGAGCAAAAAGAATGTCT
TCTGCATGCGGTAACCAAGAAGGTAGTAGAAACCCGGGATATAAATGAGG
AACGTAAGAATTTTGACTCTAGATTTGAGAAAGACCAGCTCCATGTGAAG
GCGATTAAATCGGAACCGGACAGCGATGGATACGGAGAGGGTGTGGTCAG
AAGATTTCTGGAAACTTCGGACGCCTACGAGGTTTCTGACCCCGGTCGAT
CTATTGCCGAGGTCCTCCATCAAGGTGCACTACCCCATAACAGGATATGC
GAGATTGTCCATGAGCATGAAAGACGGAACGGGCGGTTATGGAGACCTAT
CTATCGTGAGGGGGCAAAGCAAGTCCTTCGTCTCTTGGAAGCTAAGGAGT
TTGCCACAATGTTGGCCAGGAGGGATGTTTCTCTTGGCTATACGGTCGAT
GGCGAACATGAAGCTAAATTTTGGAAGTGGCGAGGTTATTTGGTGCGTTA
TATCGATGAAGGGAAAGAACACAGTTTACGAGGTAAACCGCCGCTGCTTT
TAATTCATGGATTTGGGGCAAGCTCTCAACACTACAAGAGAAGTATTCGA
GAATTGAAGAACCACTATCATGTTTATGCGTTGGATTTAGTTGGGTTTGG
GAGATCAGAGAAGCCACCAACTCAGTACACACAAGCATTCTGGGAGTGCG
TGATATGGGACTTTGTTGAAAAAGTTGTTCAGCAACCCGTTTTCGTTGCA
GGGAACAGCATTGGTGGTTATTTCGCATGCGCTTTTGGAGCAGATGCATT
TCAATCTTACTGCAGAGGGGTTTGTCTGATCAACGCAGCCGGGAAGCTAG
AAGACTTGAACTCACAGAAAGTGGAAAGTGCTCCGAAGGAGTCTTTGATT
CAATCAGTCGTGAAGAATTCGAGCTTTGCGCGAATGTTTGCGGCGACTTT
TCTCCTGAACAATTTGAGGGGCCGAATTGACAAAACACTGAAGCTCGTGT
ATCCAACCAATCCTGATGCAGCCGATAAACCACTATTCGATGAAATAAGA
AGGAACTCGTTGGATTTCAGCGCCGCAAGTGTCCTCGCTAGTGGGCTTAT
ATTGCCACCCCCGCGCTCTCTTAGCCAGCTTCTCAATAAGTTTGAAGGAC
CGCTGATGGTGTTTCAGGGTGAACTCGATCCATTGAACAATGCCAAAGGA
CGAGCGGACACCATACAACAACAGTATCCCGATGCACGAGTTGTTCGAGT
GCAAGCAGGGCATTGTCCGCATGAGGAAGTCTCGGACATTTTCGTTGACG
AAATCATCCAGTGGATGGATGCGGAGTGCACAAAAGTCCAAAGCAGAAAC
CACGATTCCACTTTAGCGAGCTCGTAG
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