Gchil4276.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4276.t1
Unique NameGchil4276.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1794351..1794938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX51824
Max annot lvl2759|Eukaryota
Evalue6.18e-12
EggNOG OGs2C9PI@1|root,2SH2Y@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4276Gchil4276Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1794351..1794938 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4276.t1.start1Gchil4276.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1794351..1794353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4276.t1.CDS1Gchil4276.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1794351..1794938 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4276.t1.exon1Gchil4276.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1794351..1794938 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4276.t1.stop1Gchil4276.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1794936..1794938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4276.t1Gchil4276.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1794351..1794938 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4276.t1 ID=Gchil4276.t1|Name=Gchil4276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=196bp
MDQHQTEQVIRAYCSPFINSLSLPDPQSDPRFLDLLLWRGSASTPVPQFR
RCAPVPDLLDERTYGEQGVVFFQHLEQYMKSSMLPHHQVLPSRSHIATGS
RSVASKWGTPVTVWPIGEFKYTFWEAIPLIYTARESVSQTFSKGKQLIIG
KCLREAIMAGKEVMFDAPAFFELREDIGRQVISSLLPCNSAIECA*
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spliced messenger RNA

>Gchil4276.t1 ID=Gchil4276.t1|Name=Gchil4276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00004373_pilon:1794351..1794938+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCAGCACCAAACAGAACAAGTCATAAGGGCGTACTGCTCACCGTT
CATAAACTCATTGTCTCTACCAGATCCCCAGTCAGATCCCCGGTTCTTGG
ATCTTCTGCTCTGGAGAGGCTCAGCTTCTACACCTGTGCCGCAGTTCAGA
CGATGCGCCCCAGTTCCTGATCTCCTAGATGAACGCACTTACGGGGAACA
GGGTGTTGTCTTCTTTCAGCACTTGGAACAGTACATGAAGAGCTCTATGC
TTCCTCATCATCAAGTTCTGCCCAGCAGATCACACATTGCAACAGGGAGT
CGTTCAGTTGCTTCCAAATGGGGTACTCCTGTTACAGTATGGCCTATTGG
CGAGTTCAAGTATACCTTCTGGGAAGCAATCCCTCTAATTTACACAGCAA
GGGAAAGCGTAAGCCAAACCTTCTCGAAGGGGAAGCAGCTAATCATTGGA
AAATGTCTTCGAGAAGCAATCATGGCAGGAAAGGAAGTCATGTTCGACGC
TCCTGCGTTTTTTGAGCTTCGAGAAGATATCGGTAGACAAGTAATCTCGA
GTCTCTTACCATGCAATAGTGCCATCGAATGTGCATAA
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protein sequence of Gchil4276.t1

>Gchil4276.t1 ID=Gchil4276.t1|Name=Gchil4276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=196bp
MDQHQTEQVIRAYCSPFINSLSLPDPQSDPRFLDLLLWRGSASTPVPQFR
RCAPVPDLLDERTYGEQGVVFFQHLEQYMKSSMLPHHQVLPSRSHIATGS
RSVASKWGTPVTVWPIGEFKYTFWEAIPLIYTARESVSQTFSKGKQLIIG
KCLREAIMAGKEVMFDAPAFFELREDIGRQVISSLLPCNSAIECA*
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mRNA from alignment at tig00004373_pilon:1794351..1794938+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4276.t1 ID=Gchil4276.t1|Name=Gchil4276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00004373_pilon:1794351..1794938+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAGCACCAAACAGAACAAGTCATAAGGGCGTACTGCTCACCGTT
CATAAACTCATTGTCTCTACCAGATCCCCAGTCAGATCCCCGGTTCTTGG
ATCTTCTGCTCTGGAGAGGCTCAGCTTCTACACCTGTGCCGCAGTTCAGA
CGATGCGCCCCAGTTCCTGATCTCCTAGATGAACGCACTTACGGGGAACA
GGGTGTTGTCTTCTTTCAGCACTTGGAACAGTACATGAAGAGCTCTATGC
TTCCTCATCATCAAGTTCTGCCCAGCAGATCACACATTGCAACAGGGAGT
CGTTCAGTTGCTTCCAAATGGGGTACTCCTGTTACAGTATGGCCTATTGG
CGAGTTCAAGTATACCTTCTGGGAAGCAATCCCTCTAATTTACACAGCAA
GGGAAAGCGTAAGCCAAACCTTCTCGAAGGGGAAGCAGCTAATCATTGGA
AAATGTCTTCGAGAAGCAATCATGGCAGGAAAGGAAGTCATGTTCGACGC
TCCTGCGTTTTTTGAGCTTCGAGAAGATATCGGTAGACAAGTAATCTCGA
GTCTCTTACCATGCAATAGTGCCATCGAATGTGCATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1794351..1794938+

>Gchil4276.t1 ID=Gchil4276.t1|Name=Gchil4276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=588bp|location=Sequence derived from alignment at tig00004373_pilon:1794351..1794938+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAGCACCAAACAGAACAAGTCATAAGGGCGTACTGCTCACCGTT
CATAAACTCATTGTCTCTACCAGATCCCCAGTCAGATCCCCGGTTCTTGG
ATCTTCTGCTCTGGAGAGGCTCAGCTTCTACACCTGTGCCGCAGTTCAGA
CGATGCGCCCCAGTTCCTGATCTCCTAGATGAACGCACTTACGGGGAACA
GGGTGTTGTCTTCTTTCAGCACTTGGAACAGTACATGAAGAGCTCTATGC
TTCCTCATCATCAAGTTCTGCCCAGCAGATCACACATTGCAACAGGGAGT
CGTTCAGTTGCTTCCAAATGGGGTACTCCTGTTACAGTATGGCCTATTGG
CGAGTTCAAGTATACCTTCTGGGAAGCAATCCCTCTAATTTACACAGCAA
GGGAAAGCGTAAGCCAAACCTTCTCGAAGGGGAAGCAGCTAATCATTGGA
AAATGTCTTCGAGAAGCAATCATGGCAGGAAAGGAAGTCATGTTCGACGC
TCCTGCGTTTTTTGAGCTTCGAGAAGATATCGGTAGACAAGTAATCTCGA
GTCTCTTACCATGCAATAGTGCCATCGAATGTGCATAA
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