Gchil4270.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4270.t1
Unique Name	Gchil4270.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	673

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1780332..1782350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4270	Gchil4270	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1780332..1782350 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4270.t1.start1	Gchil4270.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1780332..1780334 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4270.t1.CDS1	Gchil4270.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1780332..1782350 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4270.t1.exon1	Gchil4270.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1780332..1782350 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4270.t1.stop1	Gchil4270.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1782348..1782350 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4270.t1	Gchil4270.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1780332..1782350 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1780332..1782350+
coding sequence from alignment at tig00004373_pilon:1780332..1782350+

mRNA sequence

>Gchil4270.t1 ID=Gchil4270.t1|Name=Gchil4270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=673bp
MKTFMKPKEEVRAVHPVATPPTSGTKKRKRLSSFTSPSLKDIYDSSAIPL
PVAAAAAAAAAVKSVRGADEQKAVEEMVKAAGQVLHTRSSEGNEERKENS
TPVLRKCVTFAEPLQISEAHRPLMNEDLTEPLCTILARDQEEAVSKAFQN
TPDQEVDVKDGTNIHQNHPSSSRKVMHNSTPPDNRKRSEGRKAGFQHVFS
TSSSLGDCEIELERMSPGDNEKTCIKRQLFACKEEINPQPNVRSIKMNER
AELGTFANDGDCRRSEGFNSHPSEEKLSSQIRGSDSATLPKRRRTQPSLE
LTLSNAFGTNSSLKEAAQFTLKEDSIKSSGTTESDTSDLGNVKRSSRRSH
RKPQLSEVLKLQKSLETAYWTDSRLIQRQTEVIVISDSEMEVPRSANNSP
SPERNVISTVCKERDKACVKKEPNTRVSTSVKKYNKKQGLVKPLQSLSVQ
RKRKFDSQCVALRTRSSTAKKTRARFQNDNEGSLSVSQGRSKPKQKSVGK
SDKSNTIAEVRGTTENQKRNQEESRAVKMPKSSKRKASVPKQLRAQDFLQ
ETELLASDGTTDVENASGSAKSTFTHPKGVPKLESDVDNIDLESDAENVS
PSSTCDPLQDLVKVKLNKKSWESFREGWAVHNDIMDRANPGIESSSAGEY
ILSPFGCEDLISAFGSDFGLGS*

spliced messenger RNA

>Gchil4270.t1 ID=Gchil4270.t1|Name=Gchil4270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at tig00004373_pilon:1780332..1782350+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACCTTCATGAAGCCGAAAGAGGAAGTGCGTGCCGTACATCCAGT
AGCAACCCCACCTACATCTGGAACGAAGAAGCGAAAGCGACTAAGTTCAT
TCACATCTCCTTCATTGAAAGACATCTACGATTCTTCCGCCATCCCGCTT
CCGGTtgctgctgcagctgcggcagctgctgcGGTCAAAAGCGTCAGAGG
TGCAGATGAACAAAAGGCCGTGGAAGAAATGGTGAAAGCGGCAGGACAAG
TTCTGCATACTCGCTCGTCGGAAGGAAATGAAGAACGAAAGGAAAATTCA
ACTCCGGTACTTCGAAAATGTGTAACGTTTGCTGAACCGCTTCAAATCAG
TGAAGCCCATCGCCCATTGATGAACGAGGATTTGACTGAGCCGCTTTGTA
CAATACTTGCGAGAGATCAAGAAGAAGCCGTATCGAAAGCATTTCAGAAT
ACGCCAGATCAGGAGGTGGATGTGAAAGATGGAACGAATATTCATCAAAA
TCACCCAAGCTCGAGTCGCAAAGTAATGCATAACTCGACTCCTCCCGATA
ACAGAAAACGTAGCGAAGGCAGAAAAGCGGGGTTCCAGCATGTTTTCAGC
ACTTCATCTAGTTTGGGTGATTGTGAAATAGAGCTGGAACGTATGTCGCC
CGGGGACAATGAGAAAACATGTATAAAGCGTCAACTTTTCGCATGTAAAG
AAGAAATAAATCCTCAACCCAACGTACGTTCCATTAAGATGAACGAAAGA
GCAGAACTTGGTACGTTTGCGAACGACGGAGACTGTCGCAGAAGTGAAGG
TTTCAACTCGCACCCATCAGAAGAAAAGCTTAGTAGTCAAATCCGGGGCT
CAGATAGCGCAACGCTTCCCAAGCGAAGACGAACCCAGCCAAGCCTTGAA
CTCACGCTTTCCAACGCATTTGGAACAAACTCCAGCCTAAAGGAAGCAGC
TCAATTTACACTGAAGGAAGATAGTATTAAGAGCTCTGGAACAACCGAGT
CAGACACGAGTGATTTAGGCAACGTGAAACGCAGTTCGAGACGTTCGCAT
AGAAAACCGCAACTTTCAGAGGTCCTCAAGCTTCAAAAATCATTAGAGAC
AGCGTACTGGACGGACTCCAGATTGATTCAACGACAAACAGAAGTCATAG
TCATTTCCGACAGTGAGATGGAAGTGCCCCGCAGTGCGAATAATTCACCA
TCTCCGGAAAGGAACGTTATATCTACAGTATGCAAGGAACGTGATAAGGC
ATGTGTGAAAAAGGAACCAAACACACGGGTTTCGACTTCCGTGAAGAAGT
ATAACAAGAAACAAGGTTTGGTCAAACCTCTTCAGAGTCTCTCCGTCCAA
CGGAAAAGAAAATTTGACTCCCAATGCGTTGCTCTTCGAACTAGGTCAAG
CACCGCGAAAAAGACGAGGGCGAGGTTCCAGAATGATAATGAAGGGAGCT
TAAGCGTTTCTCAAGGTCGTTCGAAGCCAAAACAGAAATCGGTTGGTAAA
TCTGACAAGTCGAACACCATTGCGGAAGTTCGAGGAACGACAGAAAATCA
GAAAAGAAATCAGGAAGAATCGAGGGCTGTGAAAATGCCGAAGAGCTCTA
AGCGCAAAGCAAGCGTACCTAAGCAGCTTCGTGCCCAAGACTTTTTACAA
GAGACGGAACTCTTGGCGTCTGATGGAACGACCGATGTGGAAAATGCGTC
AGGGAGCGCTAAATCCACGTTCACTCATCCGAAAGGAGTACCAAAGTTAG
AGAGCGATGTAGACAACATTGACTTGGAGTCGGACGCAGAAAATGTATCC
CCAAGCAGCACGTGCGATCCGCTCCAAGACTTGGTTAAAGTGAAGTTGAA
CAAGAAATCTTGGGAGAGCTTCCGTGAGGGTTGGGCAGTGCATAACGATA
TAATGGACCGCGCCAACCCTGGTATTGAGTCCTCATCAGCGGGTGAGTAC
ATTTTAAGCCCCTTCGGATGTGAAGATTTGATATCTGCGTTCGGTTCGGA
CTTTGGTCTTGGAAGTTAG

protein sequence of Gchil4270.t1

>Gchil4270.t1 ID=Gchil4270.t1|Name=Gchil4270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=673bp
MKTFMKPKEEVRAVHPVATPPTSGTKKRKRLSSFTSPSLKDIYDSSAIPL
PVAAAAAAAAAVKSVRGADEQKAVEEMVKAAGQVLHTRSSEGNEERKENS
TPVLRKCVTFAEPLQISEAHRPLMNEDLTEPLCTILARDQEEAVSKAFQN
TPDQEVDVKDGTNIHQNHPSSSRKVMHNSTPPDNRKRSEGRKAGFQHVFS
TSSSLGDCEIELERMSPGDNEKTCIKRQLFACKEEINPQPNVRSIKMNER
AELGTFANDGDCRRSEGFNSHPSEEKLSSQIRGSDSATLPKRRRTQPSLE
LTLSNAFGTNSSLKEAAQFTLKEDSIKSSGTTESDTSDLGNVKRSSRRSH
RKPQLSEVLKLQKSLETAYWTDSRLIQRQTEVIVISDSEMEVPRSANNSP
SPERNVISTVCKERDKACVKKEPNTRVSTSVKKYNKKQGLVKPLQSLSVQ
RKRKFDSQCVALRTRSSTAKKTRARFQNDNEGSLSVSQGRSKPKQKSVGK
SDKSNTIAEVRGTTENQKRNQEESRAVKMPKSSKRKASVPKQLRAQDFLQ
ETELLASDGTTDVENASGSAKSTFTHPKGVPKLESDVDNIDLESDAENVS
PSSTCDPLQDLVKVKLNKKSWESFREGWAVHNDIMDRANPGIESSSAGEY
ILSPFGCEDLISAFGSDFGLGS*

mRNA from alignment at tig00004373_pilon:1780332..1782350+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4270.t1 ID=Gchil4270.t1|Name=Gchil4270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at tig00004373_pilon:1780332..1782350+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACCTTCATGAAGCCGAAAGAGGAAGTGCGTGCCGTACATCCAGT
AGCAACCCCACCTACATCTGGAACGAAGAAGCGAAAGCGACTAAGTTCAT
TCACATCTCCTTCATTGAAAGACATCTACGATTCTTCCGCCATCCCGCTT
CCGGTtgctgctgcagctgcggcagctgctgcGGTCAAAAGCGTCAGAGG
TGCAGATGAACAAAAGGCCGTGGAAGAAATGGTGAAAGCGGCAGGACAAG
TTCTGCATACTCGCTCGTCGGAAGGAAATGAAGAACGAAAGGAAAATTCA
ACTCCGGTACTTCGAAAATGTGTAACGTTTGCTGAACCGCTTCAAATCAG
TGAAGCCCATCGCCCATTGATGAACGAGGATTTGACTGAGCCGCTTTGTA
CAATACTTGCGAGAGATCAAGAAGAAGCCGTATCGAAAGCATTTCAGAAT
ACGCCAGATCAGGAGGTGGATGTGAAAGATGGAACGAATATTCATCAAAA
TCACCCAAGCTCGAGTCGCAAAGTAATGCATAACTCGACTCCTCCCGATA
ACAGAAAACGTAGCGAAGGCAGAAAAGCGGGGTTCCAGCATGTTTTCAGC
ACTTCATCTAGTTTGGGTGATTGTGAAATAGAGCTGGAACGTATGTCGCC
CGGGGACAATGAGAAAACATGTATAAAGCGTCAACTTTTCGCATGTAAAG
AAGAAATAAATCCTCAACCCAACGTACGTTCCATTAAGATGAACGAAAGA
GCAGAACTTGGTACGTTTGCGAACGACGGAGACTGTCGCAGAAGTGAAGG
TTTCAACTCGCACCCATCAGAAGAAAAGCTTAGTAGTCAAATCCGGGGCT
CAGATAGCGCAACGCTTCCCAAGCGAAGACGAACCCAGCCAAGCCTTGAA
CTCACGCTTTCCAACGCATTTGGAACAAACTCCAGCCTAAAGGAAGCAGC
TCAATTTACACTGAAGGAAGATAGTATTAAGAGCTCTGGAACAACCGAGT
CAGACACGAGTGATTTAGGCAACGTGAAACGCAGTTCGAGACGTTCGCAT
AGAAAACCGCAACTTTCAGAGGTCCTCAAGCTTCAAAAATCATTAGAGAC
AGCGTACTGGACGGACTCCAGATTGATTCAACGACAAACAGAAGTCATAG
TCATTTCCGACAGTGAGATGGAAGTGCCCCGCAGTGCGAATAATTCACCA
TCTCCGGAAAGGAACGTTATATCTACAGTATGCAAGGAACGTGATAAGGC
ATGTGTGAAAAAGGAACCAAACACACGGGTTTCGACTTCCGTGAAGAAGT
ATAACAAGAAACAAGGTTTGGTCAAACCTCTTCAGAGTCTCTCCGTCCAA
CGGAAAAGAAAATTTGACTCCCAATGCGTTGCTCTTCGAACTAGGTCAAG
CACCGCGAAAAAGACGAGGGCGAGGTTCCAGAATGATAATGAAGGGAGCT
TAAGCGTTTCTCAAGGTCGTTCGAAGCCAAAACAGAAATCGGTTGGTAAA
TCTGACAAGTCGAACACCATTGCGGAAGTTCGAGGAACGACAGAAAATCA
GAAAAGAAATCAGGAAGAATCGAGGGCTGTGAAAATGCCGAAGAGCTCTA
AGCGCAAAGCAAGCGTACCTAAGCAGCTTCGTGCCCAAGACTTTTTACAA
GAGACGGAACTCTTGGCGTCTGATGGAACGACCGATGTGGAAAATGCGTC
AGGGAGCGCTAAATCCACGTTCACTCATCCGAAAGGAGTACCAAAGTTAG
AGAGCGATGTAGACAACATTGACTTGGAGTCGGACGCAGAAAATGTATCC
CCAAGCAGCACGTGCGATCCGCTCCAAGACTTGGTTAAAGTGAAGTTGAA
CAAGAAATCTTGGGAGAGCTTCCGTGAGGGTTGGGCAGTGCATAACGATA
TAATGGACCGCGCCAACCCTGGTATTGAGTCCTCATCAGCGGGTGAGTAC
ATTTTAAGCCCCTTCGGATGTGAAGATTTGATATCTGCGTTCGGTTCGGA
CTTTGGTCTTGGAAGTTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:1780332..1782350+

>Gchil4270.t1 ID=Gchil4270.t1|Name=Gchil4270.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2019bp|location=Sequence derived from alignment at tig00004373_pilon:1780332..1782350+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACCTTCATGAAGCCGAAAGAGGAAGTGCGTGCCGTACATCCAGT
AGCAACCCCACCTACATCTGGAACGAAGAAGCGAAAGCGACTAAGTTCAT
TCACATCTCCTTCATTGAAAGACATCTACGATTCTTCCGCCATCCCGCTT
CCGGTtgctgctgcagctgcggcagctgctgcGGTCAAAAGCGTCAGAGG
TGCAGATGAACAAAAGGCCGTGGAAGAAATGGTGAAAGCGGCAGGACAAG
TTCTGCATACTCGCTCGTCGGAAGGAAATGAAGAACGAAAGGAAAATTCA
ACTCCGGTACTTCGAAAATGTGTAACGTTTGCTGAACCGCTTCAAATCAG
TGAAGCCCATCGCCCATTGATGAACGAGGATTTGACTGAGCCGCTTTGTA
CAATACTTGCGAGAGATCAAGAAGAAGCCGTATCGAAAGCATTTCAGAAT
ACGCCAGATCAGGAGGTGGATGTGAAAGATGGAACGAATATTCATCAAAA
TCACCCAAGCTCGAGTCGCAAAGTAATGCATAACTCGACTCCTCCCGATA
ACAGAAAACGTAGCGAAGGCAGAAAAGCGGGGTTCCAGCATGTTTTCAGC
ACTTCATCTAGTTTGGGTGATTGTGAAATAGAGCTGGAACGTATGTCGCC
CGGGGACAATGAGAAAACATGTATAAAGCGTCAACTTTTCGCATGTAAAG
AAGAAATAAATCCTCAACCCAACGTACGTTCCATTAAGATGAACGAAAGA
GCAGAACTTGGTACGTTTGCGAACGACGGAGACTGTCGCAGAAGTGAAGG
TTTCAACTCGCACCCATCAGAAGAAAAGCTTAGTAGTCAAATCCGGGGCT
CAGATAGCGCAACGCTTCCCAAGCGAAGACGAACCCAGCCAAGCCTTGAA
CTCACGCTTTCCAACGCATTTGGAACAAACTCCAGCCTAAAGGAAGCAGC
TCAATTTACACTGAAGGAAGATAGTATTAAGAGCTCTGGAACAACCGAGT
CAGACACGAGTGATTTAGGCAACGTGAAACGCAGTTCGAGACGTTCGCAT
AGAAAACCGCAACTTTCAGAGGTCCTCAAGCTTCAAAAATCATTAGAGAC
AGCGTACTGGACGGACTCCAGATTGATTCAACGACAAACAGAAGTCATAG
TCATTTCCGACAGTGAGATGGAAGTGCCCCGCAGTGCGAATAATTCACCA
TCTCCGGAAAGGAACGTTATATCTACAGTATGCAAGGAACGTGATAAGGC
ATGTGTGAAAAAGGAACCAAACACACGGGTTTCGACTTCCGTGAAGAAGT
ATAACAAGAAACAAGGTTTGGTCAAACCTCTTCAGAGTCTCTCCGTCCAA
CGGAAAAGAAAATTTGACTCCCAATGCGTTGCTCTTCGAACTAGGTCAAG
CACCGCGAAAAAGACGAGGGCGAGGTTCCAGAATGATAATGAAGGGAGCT
TAAGCGTTTCTCAAGGTCGTTCGAAGCCAAAACAGAAATCGGTTGGTAAA
TCTGACAAGTCGAACACCATTGCGGAAGTTCGAGGAACGACAGAAAATCA
GAAAAGAAATCAGGAAGAATCGAGGGCTGTGAAAATGCCGAAGAGCTCTA
AGCGCAAAGCAAGCGTACCTAAGCAGCTTCGTGCCCAAGACTTTTTACAA
GAGACGGAACTCTTGGCGTCTGATGGAACGACCGATGTGGAAAATGCGTC
AGGGAGCGCTAAATCCACGTTCACTCATCCGAAAGGAGTACCAAAGTTAG
AGAGCGATGTAGACAACATTGACTTGGAGTCGGACGCAGAAAATGTATCC
CCAAGCAGCACGTGCGATCCGCTCCAAGACTTGGTTAAAGTGAAGTTGAA
CAAGAAATCTTGGGAGAGCTTCCGTGAGGGTTGGGCAGTGCATAACGATA
TAATGGACCGCGCCAACCCTGGTATTGAGTCCTCATCAGCGGGTGAGTAC
ATTTTAAGCCCCTTCGGATGTGAAGATTTGATATCTGCGTTCGGTTCGGA
CTTTGGTCTTGGAAGTTAG