Gchil4269.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4269.t1
Unique NameGchil4269.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1758432..1759141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708692.1
Preferred nameVPS25
PFAMsESCRT-II
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00010,RC00131,RC01160
KEGG koko:K01904,ko:K01952,ko:K07442,ko:K08867,ko:K12189
KEGG ReactionR01616,R01943,R02194,R02221,R02255,R04463,R06583
KEGG Pathwayko00130,ko00230,ko00360,ko00940,ko01100,ko01110,ko01130,ko04144,map00130,map00230,map00360,map00940,map01100,map01110,map01130,map04144
KEGG ModuleM00039,M00048,M00137,M00350,M00410
GOsGO:0000003,GO:0000429,GO:0000430,GO:0000433,GO:0000578,GO:0000814,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003002,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006469,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006897,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007154,GO:0007163,GO:0007175,GO:0007176,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007444,GO:0007483,GO:0007484,GO:0007485,GO:0007548,GO:0007552,GO:0007560,GO:0007584,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008285,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010669,GO:0010941,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030011,GO:0030154,GO:0030163,GO:0030539,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0033673,GO:0034613,GO:0035088,GO:0035090,GO:0035112,GO:0035126,GO:0035215,GO:0035239,GO:0035282,GO:0035295,GO:0036257,GO:0036258,GO:0036452,GO:0042058,GO:0042059,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0042981,GO:0043067,GO:0043086,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045013,GO:0045014,GO:0045184,GO:0045197,GO:0045199,GO:0045324,GO:0045450,GO:0045859,GO:0045892,GO:0045934,GO:0045936,GO:0045990,GO:0046015,GO:0046618,GO:0046661,GO:0046907,GO:0046983,GO:0047485,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048599,GO:0048608,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048803,GO:0048805,GO:0048806,GO:0048808,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051338,GO:0051348,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060429,GO:0060562,GO:0060810,GO:0060811,GO:0061097,GO:0061099,GO:0061245,GO:0061458,GO:0061919,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070086,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090598,GO:0097352,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1904669,GO:2000112,GO:2000113,GO:2000272,GO:2001141
Evalue5.42e-54
EggNOG OGsKOG4068@1|root,KOG4068@2759|Eukaryota
EC2.1.1.219,2.1.1.220,2.7.11.1,6.2.1.12,6.3.5.3
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko03016,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4269Gchil4269Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1758432..1759141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4269.t1Gchil4269.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1758432..1759141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4269.t1.stop1Gchil4269.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1758432..1758434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4269.t1.CDS1Gchil4269.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1758432..1758452 -
Gchil4269.t1.CDS2Gchil4269.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1758535..1758635 -
Gchil4269.t1.CDS3Gchil4269.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1758730..1759141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4269.t1.exon1Gchil4269.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1758432..1758452 -
Gchil4269.t1.exon2Gchil4269.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1758535..1758635 -
Gchil4269.t1.exon3Gchil4269.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1758730..1759141 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4269.t1.intron1Gchil4269.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1758453..1758534 -
Gchil4269.t1.intron2Gchil4269.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1758636..1758729 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4269.t1.start1Gchil4269.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1759139..1759141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4269.t1 ID=Gchil4269.t1|Name=Gchil4269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MSEYGFPPFHSFPPSFTRQPIEETRAKQTELWCDLIRDYCRVKRIFWLDV
SQARESSLFHNPAIDRRLSDEDIHYFLGQLVRKGDAVWDPDRKRCLVFWR
RPSDWGELIYQWVENTGRNGNLLTVHEIRKGSASIGYEFHDLELDTTMKA
LQALEAIGKCIIIRGDGDDGLGVKFVN*
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spliced messenger RNA

>Gchil4269.t1 ID=Gchil4269.t1|Name=Gchil4269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004373_pilon:1758432..1759141- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAGTACGGTTTCCCGCCATTTCATTCGTTTCCACCGTCCTTCAC
CCGCCAACCTATTGAAGAAACAAGGGCGAAACAAACAGAGCTTTGGTGTG
ATTTGATTCGCGACTATTGTCGCGTGAAAAGGATTTTCTGGCTAGATGTT
AGCCAGGCCAGAGAATCCAGCTTATTTCACAATCCAGCAATCGATCGCAG
ACTCTCTGATGAAGACATCCATTATTTCCTTGGGCAACTCGTAAGGAAAG
GAGATGCAGTGTGGGATCCAGATCGAAAGCGGTGCTTAGTTTTCTGGAGA
CGACCAAGCGATTGGGGTGAGCTCATATATCAGTGGGTGGAGAATACCGG
AAGAAATGGGAATCTTCTCACTGTCCACGAAATTCGAAAGGGAAGCGCCT
CAATCGGTTACGAGTTTCATGACTTGGAGCTAGATACAACTATGAAAGCC
CTGCAAGCCTTGGAAGCTATTGGAAAATGTATCATTATCAGGGGTGATGG
TGATGATGGTCTTGGCGTCAAGTTCGTCAATTAG
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protein sequence of Gchil4269.t1

>Gchil4269.t1 ID=Gchil4269.t1|Name=Gchil4269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MSEYGFPPFHSFPPSFTRQPIEETRAKQTELWCDLIRDYCRVKRIFWLDV
SQARESSLFHNPAIDRRLSDEDIHYFLGQLVRKGDAVWDPDRKRCLVFWR
RPSDWGELIYQWVENTGRNGNLLTVHEIRKGSASIGYEFHDLELDTTMKA
LQALEAIGKCIIIRGDGDDGLGVKFVN*
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mRNA from alignment at tig00004373_pilon:1758432..1759141-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4269.t1 ID=Gchil4269.t1|Name=Gchil4269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=710bp|location=Sequence derived from alignment at tig00004373_pilon:1758432..1759141- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGAGTACGGTTTCCCGCCATTTCATTCGTTTCCACCGTCCTTCAC
CCGCCAACCTATTGAAGAAACAAGGGCGAAACAAACAGAGCTTTGGTGTG
ATTTGATTCGCGACTATTGTCGCGTGAAAAGGATTTTCTGGCTAGATGTT
AGCCAGGCCAGAGAATCCAGCTTATTTCACAATCCAGCAATCGATCGCAG
ACTCTCTGATGAAGACATCCATTATTTCCTTGGGCAACTCGTAAGGAAAG
GAGATGCAGTGTGGGATCCAGATCGAAAGCGGTGCTTAGTTTTCTGGAGA
CGACCAAGCGATTGGGGTGAGCTCATATATCAGTGGGTGGAGAATACCGG
AAGAAATGGGAATCTTCTCACTGTCCACGAAATTCGAAAGGGAAGCGCCT
CAATCGGTTACGGTAAGAGAACAGCATAGACTCTTTTAATCATTTTATTG
GTTCAGAACACTAACTTGTGACGGTTCCCCTGTCTATAATCGCGTTCATA
TCGAAGAGTTTCATGACTTGGAGCTAGATACAACTATGAAAGCCCTGCAA
GCCTTGGAAGCTATTGGAAAATGTATCATTATCAGGGGTGATGGTGATGA
TGGTCTTGTAAGTTTAGCTTGGTTAGCAGTTATTTTATCAAGGAGACGGC
TAACTGGACTATTGTGTGTATTTATCGAGAACTTTTCAGGGCGTCAAGTT
CGTCAATTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1758432..1759141-

>Gchil4269.t1 ID=Gchil4269.t1|Name=Gchil4269.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00004373_pilon:1758432..1759141- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGAGTACGGTTTCCCGCCATTTCATTCGTTTCCACCGTCCTTCAC
CCGCCAACCTATTGAAGAAACAAGGGCGAAACAAACAGAGCTTTGGTGTG
ATTTGATTCGCGACTATTGTCGCGTGAAAAGGATTTTCTGGCTAGATGTT
AGCCAGGCCAGAGAATCCAGCTTATTTCACAATCCAGCAATCGATCGCAG
ACTCTCTGATGAAGACATCCATTATTTCCTTGGGCAACTCGTAAGGAAAG
GAGATGCAGTGTGGGATCCAGATCGAAAGCGGTGCTTAGTTTTCTGGAGA
CGACCAAGCGATTGGGGTGAGCTCATATATCAGTGGGTGGAGAATACCGG
AAGAAATGGGAATCTTCTCACTGTCCACGAAATTCGAAAGGGAAGCGCCT
CAATCGGTTACGAGTTTCATGACTTGGAGCTAGATACAACTATGAAAGCC
CTGCAAGCCTTGGAAGCTATTGGAAAATGTATCATTATCAGGGGTGATGG
TGATGATGGTCTTGGCGTCAAGTTCGTCAATTAG
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