Gchil4265.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4265.t1
Unique NameGchil4265.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1693350..1694786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_07442T0
PFAMsPex14_N
Max annot lvl4751|Fungi
Evalue0.000105
EggNOG OGs2C61K@1|root,2S3Q3@2759|Eukaryota,3A9KV@33154|Opisthokonta,3P7S2@4751|Fungi
DescriptionPeroxisomal membrane anchor protein (Pex14p) conserved region
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4265Gchil4265Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1693350..1694786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4265.t1Gchil4265.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1693350..1694786 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4265.t1.stop1Gchil4265.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1693350..1693352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4265.t1.CDS1Gchil4265.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1693350..1694224 -
Gchil4265.t1.CDS2Gchil4265.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1694339..1694786 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4265.t1.exon1Gchil4265.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1693350..1694224 -
Gchil4265.t1.exon2Gchil4265.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1694339..1694786 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4265.t1.intron1Gchil4265.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1694225..1694338 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4265.t1.start1Gchil4265.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1694784..1694786 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4265.t1 ID=Gchil4265.t1|Name=Gchil4265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp
MGIRESSVQQAVTFLKDPRVRSSDLSRAVAFLRQKGISDEELREAYRREG
LPFPHVVAHPSTRPPFPQHLYPPAPLPFPGPPHPVRPVPTRPSWVSVFLG
LTAAAGVYTAVRELLRRYVVPLYFPDAARIVEERRLREENTFLAQERHIA
ELRERIQDLLASSEKTSDQVEHLSKSISSSIALRERELSQASELRDAIRQ
LSHSVTASGNTETSRVIRSSPEREAGSNLSQRILNHAHKSGSLAYTHGKQ
TDTSILRKSVDIQTADVNADVDPVFHGSSSAKDTPVSENHVHDYMSTGKR
KLGSESVLYDGGDEFMTIKPAEIDENWQSKVFRSNQVEKEAPEQQVVISG
IQKPHDSIENGIITRKADTTEVHFCEEDEVGGIHEIDESKGLRAAIARQM
FQSDVLRESKNVVNASQTSSEHRVRPVSMPQLDIPLSDAE*
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spliced messenger RNA

>Gchil4265.t1 ID=Gchil4265.t1|Name=Gchil4265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00004373_pilon:1693350..1694786- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATCCGCGAGAGTTCAGTTCAACAGGCTGTTACTTTCTTGAAGGA
CCCCCGCGTGAGAAGTTCTGATCTCTCCCGAGCCGTTGCCTTTCTTCGAC
AAAAGGGCATATCCGATGAAGAGCTTCGCGAAGCATATCGACGAGAAGGA
CTTCCGTTTCCTCATGTTGTCGCGCACCCTTCAACCCGTCCACCTTTTCC
CCAGCACCTTTATCCCCCGGCTCCCCTGCCGTTTCCAGGTCCGCCGCACC
CAGTGAGGCCGGTACCAACAAGGCCTTCTTGGGTGTCCGTATTCTTGGGG
TTGACGGCAGCAGCTGGAGTATACACTGCAGTGCGCGAACTTCTTCGAAG
ATACGTCGTGCCTCTCTACTTTCCGGACGCAGCCCGAATCGTGGAGGAGC
GTCGCTTGCGCGAAGAAAACACATTTCTTGCCCAAGAACGTCATATAGCC
GAGCTTAGGGAGAGAATCCAAGATCTTCTTGCTTCATCGGAAAAGACTAG
TGATCAAGTGGAACATCTATCAAAATCCATTTCTTCTTCTATAGCATTAA
GAGAACGTGAATTATCTCAGGCTTCTGAGCTGCGGGATGCTATTCGACAG
CTATCCCACAGCGTCACTGCTTCTGGAAATACTGAAACATCACGAGTGAT
AAGGTCATCCCCTGAACGAGAAGCAGGAAGTAATCTGAGCCAGCGTATTC
TGAATCATGCTCATAAGAGCGGAAGTTTGGCATACACTCATGGTAAGCAG
ACTGATACATCCATCCTGCGAAAATCTGTCGATATTCAAACTGCCGATGT
GAATGCCGACGTGGATCCTGTGTTTCATGGATCAAGTTCAGCGAAGGACA
CCCCCGTCTCAGAAAATCATGTGCATGACTACATGTCTACAGGAAAAAGG
AAGCTTGGTTCAGAAAGCGTTCTGTACGACGGGGGTGATGAATTTATGAC
TATAAAGCCGGCCGAGATTGACGAGAATTGGCAGTCAAAGGTCTTTAGGT
CAAACCAAGTTGAAAAAGAAGCTCCTGAACAACAAGTGGTTATCAGTGGT
ATACAAAAGCCCCATGACAGTATTGAAAATGGAATAATAACAAGAAAGGC
AGACACGACAGAGGTTCATTTTTGCGAGGAAGATGAAGTTGGAGGAATAC
ATGAAATTGATGAGTCTAAGGGGCTTCGTGCTGCCATTGCGCGACAGATG
TTTCAGTCCGACGTGCTGAGAGAGTCAAAAAATGTGGTGAACGCTAGTCA
AACATCAAGCGAACATCGGGTAAGACCAGTCAGTATGCCGCAATTAGACA
TTCCCTTGAGCGATGCTGAATGA
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protein sequence of Gchil4265.t1

>Gchil4265.t1 ID=Gchil4265.t1|Name=Gchil4265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=441bp
MGIRESSVQQAVTFLKDPRVRSSDLSRAVAFLRQKGISDEELREAYRREG
LPFPHVVAHPSTRPPFPQHLYPPAPLPFPGPPHPVRPVPTRPSWVSVFLG
LTAAAGVYTAVRELLRRYVVPLYFPDAARIVEERRLREENTFLAQERHIA
ELRERIQDLLASSEKTSDQVEHLSKSISSSIALRERELSQASELRDAIRQ
LSHSVTASGNTETSRVIRSSPEREAGSNLSQRILNHAHKSGSLAYTHGKQ
TDTSILRKSVDIQTADVNADVDPVFHGSSSAKDTPVSENHVHDYMSTGKR
KLGSESVLYDGGDEFMTIKPAEIDENWQSKVFRSNQVEKEAPEQQVVISG
IQKPHDSIENGIITRKADTTEVHFCEEDEVGGIHEIDESKGLRAAIARQM
FQSDVLRESKNVVNASQTSSEHRVRPVSMPQLDIPLSDAE*
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mRNA from alignment at tig00004373_pilon:1693350..1694786-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4265.t1 ID=Gchil4265.t1|Name=Gchil4265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004373_pilon:1693350..1694786- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAATCCGCGAGAGTTCAGTTCAACAGGCTGTTACTTTCTTGAAGGA
CCCCCGCGTGAGAAGTTCTGATCTCTCCCGAGCCGTTGCCTTTCTTCGAC
AAAAGGGCATATCCGATGAAGAGCTTCGCGAAGCATATCGACGAGAAGGA
CTTCCGTTTCCTCATGTTGTCGCGCACCCTTCAACCCGTCCACCTTTTCC
CCAGCACCTTTATCCCCCGGCTCCCCTGCCGTTTCCAGGTCCGCCGCACC
CAGTGAGGCCGGTACCAACAAGGCCTTCTTGGGTGTCCGTATTCTTGGGG
TTGACGGCAGCAGCTGGAGTATACACTGCAGTGCGCGAACTTCTTCGAAG
ATACGTCGTGCCTCTCTACTTTCCGGACGCAGCCCGAATCGTGGAGGAGC
GTCGCTTGCGCGAAGAAAACACATTTCTTGCCCAAGAACGTCATATAGGT
AAGCAAAGCTTCAGTCGTTATGCATTATGAATGCTGATCACTATGAATAT
CTCGTCGTCGATTCTAACCGATTGCTATTGCTATTATATGGCTTATGTTT
GGTCGATGAAAGCCGAGCTTAGGGAGAGAATCCAAGATCTTCTTGCTTCA
TCGGAAAAGACTAGTGATCAAGTGGAACATCTATCAAAATCCATTTCTTC
TTCTATAGCATTAAGAGAACGTGAATTATCTCAGGCTTCTGAGCTGCGGG
ATGCTATTCGACAGCTATCCCACAGCGTCACTGCTTCTGGAAATACTGAA
ACATCACGAGTGATAAGGTCATCCCCTGAACGAGAAGCAGGAAGTAATCT
GAGCCAGCGTATTCTGAATCATGCTCATAAGAGCGGAAGTTTGGCATACA
CTCATGGTAAGCAGACTGATACATCCATCCTGCGAAAATCTGTCGATATT
CAAACTGCCGATGTGAATGCCGACGTGGATCCTGTGTTTCATGGATCAAG
TTCAGCGAAGGACACCCCCGTCTCAGAAAATCATGTGCATGACTACATGT
CTACAGGAAAAAGGAAGCTTGGTTCAGAAAGCGTTCTGTACGACGGGGGT
GATGAATTTATGACTATAAAGCCGGCCGAGATTGACGAGAATTGGCAGTC
AAAGGTCTTTAGGTCAAACCAAGTTGAAAAAGAAGCTCCTGAACAACAAG
TGGTTATCAGTGGTATACAAAAGCCCCATGACAGTATTGAAAATGGAATA
ATAACAAGAAAGGCAGACACGACAGAGGTTCATTTTTGCGAGGAAGATGA
AGTTGGAGGAATACATGAAATTGATGAGTCTAAGGGGCTTCGTGCTGCCA
TTGCGCGACAGATGTTTCAGTCCGACGTGCTGAGAGAGTCAAAAAATGTG
GTGAACGCTAGTCAAACATCAAGCGAACATCGGGTAAGACCAGTCAGTAT
GCCGCAATTAGACATTCCCTTGAGCGATGCTGAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1693350..1694786-

>Gchil4265.t1 ID=Gchil4265.t1|Name=Gchil4265.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00004373_pilon:1693350..1694786- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAATCCGCGAGAGTTCAGTTCAACAGGCTGTTACTTTCTTGAAGGA
CCCCCGCGTGAGAAGTTCTGATCTCTCCCGAGCCGTTGCCTTTCTTCGAC
AAAAGGGCATATCCGATGAAGAGCTTCGCGAAGCATATCGACGAGAAGGA
CTTCCGTTTCCTCATGTTGTCGCGCACCCTTCAACCCGTCCACCTTTTCC
CCAGCACCTTTATCCCCCGGCTCCCCTGCCGTTTCCAGGTCCGCCGCACC
CAGTGAGGCCGGTACCAACAAGGCCTTCTTGGGTGTCCGTATTCTTGGGG
TTGACGGCAGCAGCTGGAGTATACACTGCAGTGCGCGAACTTCTTCGAAG
ATACGTCGTGCCTCTCTACTTTCCGGACGCAGCCCGAATCGTGGAGGAGC
GTCGCTTGCGCGAAGAAAACACATTTCTTGCCCAAGAACGTCATATAGCC
GAGCTTAGGGAGAGAATCCAAGATCTTCTTGCTTCATCGGAAAAGACTAG
TGATCAAGTGGAACATCTATCAAAATCCATTTCTTCTTCTATAGCATTAA
GAGAACGTGAATTATCTCAGGCTTCTGAGCTGCGGGATGCTATTCGACAG
CTATCCCACAGCGTCACTGCTTCTGGAAATACTGAAACATCACGAGTGAT
AAGGTCATCCCCTGAACGAGAAGCAGGAAGTAATCTGAGCCAGCGTATTC
TGAATCATGCTCATAAGAGCGGAAGTTTGGCATACACTCATGGTAAGCAG
ACTGATACATCCATCCTGCGAAAATCTGTCGATATTCAAACTGCCGATGT
GAATGCCGACGTGGATCCTGTGTTTCATGGATCAAGTTCAGCGAAGGACA
CCCCCGTCTCAGAAAATCATGTGCATGACTACATGTCTACAGGAAAAAGG
AAGCTTGGTTCAGAAAGCGTTCTGTACGACGGGGGTGATGAATTTATGAC
TATAAAGCCGGCCGAGATTGACGAGAATTGGCAGTCAAAGGTCTTTAGGT
CAAACCAAGTTGAAAAAGAAGCTCCTGAACAACAAGTGGTTATCAGTGGT
ATACAAAAGCCCCATGACAGTATTGAAAATGGAATAATAACAAGAAAGGC
AGACACGACAGAGGTTCATTTTTGCGAGGAAGATGAAGTTGGAGGAATAC
ATGAAATTGATGAGTCTAAGGGGCTTCGTGCTGCCATTGCGCGACAGATG
TTTCAGTCCGACGTGCTGAGAGAGTCAAAAAATGTGGTGAACGCTAGTCA
AACATCAAGCGAACATCGGGTAAGACCAGTCAGTATGCCGCAATTAGACA
TTCCCTTGAGCGATGCTGAATGA
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