Gchil4261.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4261.t1
Unique Name	Gchil4261.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	420

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1685090..1686349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT110CT
PFAMs	ATP-sulfurylase,PUA_2
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078,RC02809,RC02889
KEGG ko	ko:K00958,ko:K13811
KEGG Reaction	R00509,R00529,R04928,R04929
KEGG Pathway	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG Module	M00176,M00596
Evalue	2.92e-153
EggNOG OGs	COG2046@1\|root,KOG0636@2759\|Eukaryota
EC	2.7.1.25,2.7.7.4
Description	sulfate adenylyltransferase (ATP) activity
COG category	P
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4261	Gchil4261	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1685090..1686349 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4261.t1.start1	Gchil4261.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1685090..1685092 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4261.t1.CDS1	Gchil4261.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1685090..1686349 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4261.t1.exon1	Gchil4261.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1685090..1686349 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4261.t1.stop1	Gchil4261.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1686347..1686349 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4261.t1	Gchil4261.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1685090..1686349 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1685090..1686349+
coding sequence from alignment at tig00004373_pilon:1685090..1686349+

mRNA sequence

>Gchil4261.t1 ID=Gchil4261.t1|Name=Gchil4261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp
MATISPVHGGGELVDRIVTEIPDAETLPKIVVNDVDMTSLYRIADGTLSP
LTGPMVKDDYDSVLTSKFIMRNGAKWAWTIPIGLPVTTEEARIAPEGAKV
ALYSETTGKVFGVMEVSSLYEWDKAAFIKAVYGTERVDHPGARLWMTDDR
STMIGGDISLLSFDDAREFKDRIFAPKKMRAYLEEKAFGASIGFQTRNPL
HRAHEYALVYGAETLLRSLGDEKKIGVFLNPLVGQLKGDDVPAKTRMDTY
AKLIDDGYLGEGDMDEELWKSKKQSLKEQVTLAGLDMRMFYGGPSEAVMH
GIYRQNLGLTHFIIGRKHADAPFDDKSPIWGDFDAQEVFSNLGGQLAIKT
VNVGFAAYFEELGRVGLVSDNKGKKSVSISGTKVREMLNRGEKPDERVMR
PTTAEILIQYYQAKNAMKA*

spliced messenger RNA

>Gchil4261.t1 ID=Gchil4261.t1|Name=Gchil4261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:1685090..1686349+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACTATTTCCCCAGTGCACGGAGGTGGTGAGTTGGTCGACCGCAT
CGTCACCGAGATCCCAGATGCTGAAACTCTGCCCAAGATCGTCGTCAACG
ATGTTGACATGACGTCTCTCTACAGAATTGCCGACGGCACCCTCTCCCCT
CTCACAGGCCCCATGGTCAAGGACGACTATGACTCTGTGCTCACTTCAAA
GTTCATTATGCGCAACGGCGCCAAGTGGGCATGGACCATTCCGATCGGCT
TGCCTGTCACCACTGAGGAGGCCCGTATCGCCCCAGAGGGTGCAAAGGTT
GCCTTGTACTCGGAGACCACTGGCAAGGTCTTTGGAGTCATGGAAGTTTC
CTCACTCTACGAGTGGGACAAGGCTGCATTCATCAAGGCTGTGTACGGCA
CGGAGCGTGTCGACCATCCTGGTGCCCGTTTGTGGATGACCGATGATCGC
TCTACCATGATTGGTGGTGATATCTCACTTTTGTCATTTGACGATGCGCG
CGAATTTAAAGATCGCATCTTCGCACCGAAGAAGATGAGGGCATACCTTG
AAGAAAAGGCTTTTGGTGCCTCCATTGGCTTCCAGACGCGCAACCCACTG
CATAGGGCACACGAATACGCCCTCGTATACGGTGCTGAGACTCTACTTCG
GTCTCTAGGAGATGAGAAGAAGATTGGCGTGTTCCTCAACCCCCTGGTGG
GTCAGCTCAAGGGAGATGACGTCCCGGCCAAGACTAGGATGGACACCTAT
GCTAAACTTATCGACGATGGATACTTGGGAGAAGGTGATATGGATGAAGA
GCTGTGGAAGTCTAAGAAACAGAGCCTCAAGGAGCAGGTAACTTTGGCTG
GACTCGACATGCGAATGTTCTACGGCGGCCCCTCCGAGGCAGTTATGCAT
GGCATCTATCGTCAGAACCTTGGATTGACTCACTTTATCATTGGTCGCAA
GCATGCCGACGCTCCTTTCGACGACAAGTCACCGATTTGGGGCGATTTCG
ATGCGCAAGAGGTTTTCTCAAACTTGGGAGGCCAGCTAGCTATCAAAACC
GTCAATGTCGGCTTCGCTGCGTACTTCGAAGAATTGGGCCGTGTCGGTTT
AGTGTCTGATAATAAGGGCAAGAAGTCAGTCAGCATCTCTGGAACCAAGG
TGCGTGAGATGCTGAACCGTGGCGAGAAGCCAGACGAGCGTGTGATGCGT
CCAACCACCGCGGAGATCCTGATTCAATACTACCAGGCGAAAAACGCGAT
GAAGGCGTGA

protein sequence of Gchil4261.t1

>Gchil4261.t1 ID=Gchil4261.t1|Name=Gchil4261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MATISPVHGGGELVDRIVTEIPDAETLPKIVVNDVDMTSLYRIADGTLSP
LTGPMVKDDYDSVLTSKFIMRNGAKWAWTIPIGLPVTTEEARIAPEGAKV
ALYSETTGKVFGVMEVSSLYEWDKAAFIKAVYGTERVDHPGARLWMTDDR
STMIGGDISLLSFDDAREFKDRIFAPKKMRAYLEEKAFGASIGFQTRNPL
HRAHEYALVYGAETLLRSLGDEKKIGVFLNPLVGQLKGDDVPAKTRMDTY
AKLIDDGYLGEGDMDEELWKSKKQSLKEQVTLAGLDMRMFYGGPSEAVMH
GIYRQNLGLTHFIIGRKHADAPFDDKSPIWGDFDAQEVFSNLGGQLAIKT
VNVGFAAYFEELGRVGLVSDNKGKKSVSISGTKVREMLNRGEKPDERVMR
PTTAEILIQYYQAKNAMKA*

mRNA from alignment at tig00004373_pilon:1685090..1686349+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4261.t1 ID=Gchil4261.t1|Name=Gchil4261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:1685090..1686349+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACTATTTCCCCAGTGCACGGAGGTGGTGAGTTGGTCGACCGCAT
CGTCACCGAGATCCCAGATGCTGAAACTCTGCCCAAGATCGTCGTCAACG
ATGTTGACATGACGTCTCTCTACAGAATTGCCGACGGCACCCTCTCCCCT
CTCACAGGCCCCATGGTCAAGGACGACTATGACTCTGTGCTCACTTCAAA
GTTCATTATGCGCAACGGCGCCAAGTGGGCATGGACCATTCCGATCGGCT
TGCCTGTCACCACTGAGGAGGCCCGTATCGCCCCAGAGGGTGCAAAGGTT
GCCTTGTACTCGGAGACCACTGGCAAGGTCTTTGGAGTCATGGAAGTTTC
CTCACTCTACGAGTGGGACAAGGCTGCATTCATCAAGGCTGTGTACGGCA
CGGAGCGTGTCGACCATCCTGGTGCCCGTTTGTGGATGACCGATGATCGC
TCTACCATGATTGGTGGTGATATCTCACTTTTGTCATTTGACGATGCGCG
CGAATTTAAAGATCGCATCTTCGCACCGAAGAAGATGAGGGCATACCTTG
AAGAAAAGGCTTTTGGTGCCTCCATTGGCTTCCAGACGCGCAACCCACTG
CATAGGGCACACGAATACGCCCTCGTATACGGTGCTGAGACTCTACTTCG
GTCTCTAGGAGATGAGAAGAAGATTGGCGTGTTCCTCAACCCCCTGGTGG
GTCAGCTCAAGGGAGATGACGTCCCGGCCAAGACTAGGATGGACACCTAT
GCTAAACTTATCGACGATGGATACTTGGGAGAAGGTGATATGGATGAAGA
GCTGTGGAAGTCTAAGAAACAGAGCCTCAAGGAGCAGGTAACTTTGGCTG
GACTCGACATGCGAATGTTCTACGGCGGCCCCTCCGAGGCAGTTATGCAT
GGCATCTATCGTCAGAACCTTGGATTGACTCACTTTATCATTGGTCGCAA
GCATGCCGACGCTCCTTTCGACGACAAGTCACCGATTTGGGGCGATTTCG
ATGCGCAAGAGGTTTTCTCAAACTTGGGAGGCCAGCTAGCTATCAAAACC
GTCAATGTCGGCTTCGCTGCGTACTTCGAAGAATTGGGCCGTGTCGGTTT
AGTGTCTGATAATAAGGGCAAGAAGTCAGTCAGCATCTCTGGAACCAAGG
TGCGTGAGATGCTGAACCGTGGCGAGAAGCCAGACGAGCGTGTGATGCGT
CCAACCACCGCGGAGATCCTGATTCAATACTACCAGGCGAAAAACGCGAT
GAAGGCGTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1685090..1686349+

>Gchil4261.t1 ID=Gchil4261.t1|Name=Gchil4261.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:1685090..1686349+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACTATTTCCCCAGTGCACGGAGGTGGTGAGTTGGTCGACCGCAT
CGTCACCGAGATCCCAGATGCTGAAACTCTGCCCAAGATCGTCGTCAACG
ATGTTGACATGACGTCTCTCTACAGAATTGCCGACGGCACCCTCTCCCCT
CTCACAGGCCCCATGGTCAAGGACGACTATGACTCTGTGCTCACTTCAAA
GTTCATTATGCGCAACGGCGCCAAGTGGGCATGGACCATTCCGATCGGCT
TGCCTGTCACCACTGAGGAGGCCCGTATCGCCCCAGAGGGTGCAAAGGTT
GCCTTGTACTCGGAGACCACTGGCAAGGTCTTTGGAGTCATGGAAGTTTC
CTCACTCTACGAGTGGGACAAGGCTGCATTCATCAAGGCTGTGTACGGCA
CGGAGCGTGTCGACCATCCTGGTGCCCGTTTGTGGATGACCGATGATCGC
TCTACCATGATTGGTGGTGATATCTCACTTTTGTCATTTGACGATGCGCG
CGAATTTAAAGATCGCATCTTCGCACCGAAGAAGATGAGGGCATACCTTG
AAGAAAAGGCTTTTGGTGCCTCCATTGGCTTCCAGACGCGCAACCCACTG
CATAGGGCACACGAATACGCCCTCGTATACGGTGCTGAGACTCTACTTCG
GTCTCTAGGAGATGAGAAGAAGATTGGCGTGTTCCTCAACCCCCTGGTGG
GTCAGCTCAAGGGAGATGACGTCCCGGCCAAGACTAGGATGGACACCTAT
GCTAAACTTATCGACGATGGATACTTGGGAGAAGGTGATATGGATGAAGA
GCTGTGGAAGTCTAAGAAACAGAGCCTCAAGGAGCAGGTAACTTTGGCTG
GACTCGACATGCGAATGTTCTACGGCGGCCCCTCCGAGGCAGTTATGCAT
GGCATCTATCGTCAGAACCTTGGATTGACTCACTTTATCATTGGTCGCAA
GCATGCCGACGCTCCTTTCGACGACAAGTCACCGATTTGGGGCGATTTCG
ATGCGCAAGAGGTTTTCTCAAACTTGGGAGGCCAGCTAGCTATCAAAACC
GTCAATGTCGGCTTCGCTGCGTACTTCGAAGAATTGGGCCGTGTCGGTTT
AGTGTCTGATAATAAGGGCAAGAAGTCAGTCAGCATCTCTGGAACCAAGG
TGCGTGAGATGCTGAACCGTGGCGAGAAGCCAGACGAGCGTGTGATGCGT
CCAACCACCGCGGAGATCCTGATTCAATACTACCAGGCGAAAAACGCGAT
GAAGGCGTGA