Gchil4259.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4259.t1
Unique Name	Gchil4259.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1682220..1683095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G8X0
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15111,ko:K15113
KEGG TC	2.A.29.18,2.A.29.5
GOs	GO:0000041,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085
Evalue	7.13e-61
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota
Description	S-adenosyl-L-methionine transmembrane transport
COG category	U
BRITE	ko00000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4259	Gchil4259	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1682220..1683095 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4259.t1.start1	Gchil4259.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1682220..1682222 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4259.t1.CDS1	Gchil4259.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1682220..1683095 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4259.t1.exon1	Gchil4259.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1682220..1683095 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4259.t1.stop1	Gchil4259.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1683093..1683095 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4259.t1	Gchil4259.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1682220..1683095 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1682220..1683095+
coding sequence from alignment at tig00004373_pilon:1682220..1683095+

mRNA sequence

>Gchil4259.t1 ID=Gchil4259.t1|Name=Gchil4259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MLTNTLLHPLDTVKTVRQADPKHFRGMTPTLMAIIRTRGPFALYAGIVPA
LIGSALSSALYFGAYEFARSSFAQVSPRSFQRPKTRVPLTAISAACGNVA
SSVLFVPKEVVKQRMQSGVEAGNFFGAALSILRKSGCTGLYRGYKATLLR
NVPSTMLRFAIYEEAKLAIRRVKGDKSEIPLTFSEYIVAGSVAGVVSSAC
TTPMDVLKTRFATGAIKPGTAIVPAIQEVVRRDGVRGLFVGIRARLVWAA
LFAAIGLSSYEVCKSWILAERRAPVAKASTSNNRRYQHVRR*

spliced messenger RNA

>Gchil4259.t1 ID=Gchil4259.t1|Name=Gchil4259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004373_pilon:1682220..1683095+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACAAACACATTGCTGCATCCATTGGATACGGTTAAGACAGTTCG
ACAAGCCGATCCGAAGCATTTTCGCGGAATGACACCAACGCTCATGGCCA
TTATTCGCACCAGAGGCCCTTTTGCGCTTTACGCAGGTATTGTACCGGCG
CTAATTGGAAGCGCCCTATCTTCTGCACTCTACTTTGGCGCATATGAGTT
TGCAAGGAGTAGCTTCGCTCAAGTATCACCTCGCTCGTTTCAAAGGCCAA
AGACAAGAGTTCCGCTAACTGCTATATCAGCTGCATGCGGGAACGTGGCG
TCGTCGGTCTTGTTTGTGCCAAAGGAAGTAGTGAAGCAGCGTATGCAATC
CGGGGTAGAAGCCGGAAACTTCTTTGGTGCTGCACTGAGCATTCTACGAA
AGTCAGGATGTACAGGTTTGTACCGCGGCTACAAAGCGACATTACTTCGT
AATGTACCTTCCACAATGCTGCGTTTTGCAATTTATGAGGAAGCGAAGCT
CGCAATACGAAGAGTGAAGGGCGATAAGTCAGAAATACCGCTGACGTTTT
CCGAGTATATTGTAGCTGGATCTGTTGCTGGTGTTGTCTCCAGCGCGTGC
ACCACACCAATGGATGTCTTGAAAACAAGATTTGCGACCGGTGCAATCAA
GCCTGGTACGGCGATTGTTCCTGCAATTCAGGAGGTGGTGCGCCGTGACG
GGGTGCGTGGGTTATTTGTAGGAATTCGCGCACGACTGGTGTGGGCTGCG
CTGTTTGCAGCTATTGGTCTAAGCTCATATGAAGTTTGCAAAAGCTGGAT
TCTTGCAGAGCGAAGAGCTCCAGTAGCAAAGGCGAGCACTTCCAATAATA
GAAGGTACCAACACGTCAGGAGGTGA

protein sequence of Gchil4259.t1

>Gchil4259.t1 ID=Gchil4259.t1|Name=Gchil4259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MLTNTLLHPLDTVKTVRQADPKHFRGMTPTLMAIIRTRGPFALYAGIVPA
LIGSALSSALYFGAYEFARSSFAQVSPRSFQRPKTRVPLTAISAACGNVA
SSVLFVPKEVVKQRMQSGVEAGNFFGAALSILRKSGCTGLYRGYKATLLR
NVPSTMLRFAIYEEAKLAIRRVKGDKSEIPLTFSEYIVAGSVAGVVSSAC
TTPMDVLKTRFATGAIKPGTAIVPAIQEVVRRDGVRGLFVGIRARLVWAA
LFAAIGLSSYEVCKSWILAERRAPVAKASTSNNRRYQHVRR*

mRNA from alignment at tig00004373_pilon:1682220..1683095+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4259.t1 ID=Gchil4259.t1|Name=Gchil4259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004373_pilon:1682220..1683095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACAAACACATTGCTGCATCCATTGGATACGGTTAAGACAGTTCG
ACAAGCCGATCCGAAGCATTTTCGCGGAATGACACCAACGCTCATGGCCA
TTATTCGCACCAGAGGCCCTTTTGCGCTTTACGCAGGTATTGTACCGGCG
CTAATTGGAAGCGCCCTATCTTCTGCACTCTACTTTGGCGCATATGAGTT
TGCAAGGAGTAGCTTCGCTCAAGTATCACCTCGCTCGTTTCAAAGGCCAA
AGACAAGAGTTCCGCTAACTGCTATATCAGCTGCATGCGGGAACGTGGCG
TCGTCGGTCTTGTTTGTGCCAAAGGAAGTAGTGAAGCAGCGTATGCAATC
CGGGGTAGAAGCCGGAAACTTCTTTGGTGCTGCACTGAGCATTCTACGAA
AGTCAGGATGTACAGGTTTGTACCGCGGCTACAAAGCGACATTACTTCGT
AATGTACCTTCCACAATGCTGCGTTTTGCAATTTATGAGGAAGCGAAGCT
CGCAATACGAAGAGTGAAGGGCGATAAGTCAGAAATACCGCTGACGTTTT
CCGAGTATATTGTAGCTGGATCTGTTGCTGGTGTTGTCTCCAGCGCGTGC
ACCACACCAATGGATGTCTTGAAAACAAGATTTGCGACCGGTGCAATCAA
GCCTGGTACGGCGATTGTTCCTGCAATTCAGGAGGTGGTGCGCCGTGACG
GGGTGCGTGGGTTATTTGTAGGAATTCGCGCACGACTGGTGTGGGCTGCG
CTGTTTGCAGCTATTGGTCTAAGCTCATATGAAGTTTGCAAAAGCTGGAT
TCTTGCAGAGCGAAGAGCTCCAGTAGCAAAGGCGAGCACTTCCAATAATA
GAAGGTACCAACACGTCAGGAGGTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1682220..1683095+

>Gchil4259.t1 ID=Gchil4259.t1|Name=Gchil4259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00004373_pilon:1682220..1683095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACAAACACATTGCTGCATCCATTGGATACGGTTAAGACAGTTCG
ACAAGCCGATCCGAAGCATTTTCGCGGAATGACACCAACGCTCATGGCCA
TTATTCGCACCAGAGGCCCTTTTGCGCTTTACGCAGGTATTGTACCGGCG
CTAATTGGAAGCGCCCTATCTTCTGCACTCTACTTTGGCGCATATGAGTT
TGCAAGGAGTAGCTTCGCTCAAGTATCACCTCGCTCGTTTCAAAGGCCAA
AGACAAGAGTTCCGCTAACTGCTATATCAGCTGCATGCGGGAACGTGGCG
TCGTCGGTCTTGTTTGTGCCAAAGGAAGTAGTGAAGCAGCGTATGCAATC
CGGGGTAGAAGCCGGAAACTTCTTTGGTGCTGCACTGAGCATTCTACGAA
AGTCAGGATGTACAGGTTTGTACCGCGGCTACAAAGCGACATTACTTCGT
AATGTACCTTCCACAATGCTGCGTTTTGCAATTTATGAGGAAGCGAAGCT
CGCAATACGAAGAGTGAAGGGCGATAAGTCAGAAATACCGCTGACGTTTT
CCGAGTATATTGTAGCTGGATCTGTTGCTGGTGTTGTCTCCAGCGCGTGC
ACCACACCAATGGATGTCTTGAAAACAAGATTTGCGACCGGTGCAATCAA
GCCTGGTACGGCGATTGTTCCTGCAATTCAGGAGGTGGTGCGCCGTGACG
GGGTGCGTGGGTTATTTGTAGGAATTCGCGCACGACTGGTGTGGGCTGCG
CTGTTTGCAGCTATTGGTCTAAGCTCATATGAAGTTTGCAAAAGCTGGAT
TCTTGCAGAGCGAAGAGCTCCAGTAGCAAAGGCGAGCACTTCCAATAATA
GAAGGTACCAACACGTCAGGAGGTGA