Gchil4255.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4255.t1
Unique NameGchil4255.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1673420..1673896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.J04063.1.p
PFAMsRRM_1
Max annot lvl35493|Streptophyta
GOsGO:0000166,GO:0000959,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009451,GO:0009628,GO:0009631,GO:0009651,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0034336,GO:0034641,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043242,GO:0043244,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060567,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097367,GO:1900864,GO:1901265,GO:1901360,GO:1901363,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue3.12e-24
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,37V6P@33090|Viridiplantae,3GJFA@35493|Streptophyta,3M0GE@4447|Liliopsida,3IHW1@38820|Poales
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4255Gchil4255Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1673420..1673896 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4255.t1.start1Gchil4255.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1673420..1673422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4255.t1.CDS1Gchil4255.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1673420..1673896 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4255.t1.exon1Gchil4255.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1673420..1673896 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4255.t1.stop1Gchil4255.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1673894..1673896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4255.t1Gchil4255.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1673420..1673896 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4255.t1 ID=Gchil4255.t1|Name=Gchil4255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MSAFVAPTAFSVSKLNLGSTATSYHGVKFRTAPVRPSSIPRTAAPKSQVP
HMVEDESSLESDTSVPEKTKLFVGNLSWGTTDESLGAAFSEFGTIVDSRV
IMDRFTGKSRGFGFIEYEAPDSASQALLKMNGVEIDGRAVRVDRATRRNR
QRSREEYY*
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spliced messenger RNA

>Gchil4255.t1 ID=Gchil4255.t1|Name=Gchil4255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004373_pilon:1673420..1673896+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCTTCGTCGCCCCGACAGCCTTCTCTGTCAGTAAGCTTAACCT
CGGATCTACTGCAACTTCGTACCACGGGGTCAAGTTCAGGACCGCCCCCG
TCCGTCCCTCCTCAATTCCGCGCACAGCTGCTCCAAAGTCCCAGGTACCG
CACATGGTCGAAGACGAGAGCTCTCTCGAGAGTGACACCTCCGTGCCAGA
GAAGACAAAGCTCTTCGTTGGAAACCTATCATGGGGCACTACTGATGAAT
CTCTTGGCGCTGCCTTTTCCGAGTTTGGAACTATCGTCGATTCTCGTGTC
ATTATGGATCGCTTTACTGGAAAGTCTCGTGGTTTTGGCTTCATTGAATA
CGAGGCTCCTGATTCCGCTTCCCAAGCCTTGCTCAAGATGAATGGTGTGG
AAATTGACGGCAGGGCAGTTCGTGTTGATCGCGCAACTCGTCGTAACAGA
CAGCGTTCGCGGGAGGAGTACTATTAG
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protein sequence of Gchil4255.t1

>Gchil4255.t1 ID=Gchil4255.t1|Name=Gchil4255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MSAFVAPTAFSVSKLNLGSTATSYHGVKFRTAPVRPSSIPRTAAPKSQVP
HMVEDESSLESDTSVPEKTKLFVGNLSWGTTDESLGAAFSEFGTIVDSRV
IMDRFTGKSRGFGFIEYEAPDSASQALLKMNGVEIDGRAVRVDRATRRNR
QRSREEYY*
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mRNA from alignment at tig00004373_pilon:1673420..1673896+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4255.t1 ID=Gchil4255.t1|Name=Gchil4255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004373_pilon:1673420..1673896+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCTTCGTCGCCCCGACAGCCTTCTCTGTCAGTAAGCTTAACCT
CGGATCTACTGCAACTTCGTACCACGGGGTCAAGTTCAGGACCGCCCCCG
TCCGTCCCTCCTCAATTCCGCGCACAGCTGCTCCAAAGTCCCAGGTACCG
CACATGGTCGAAGACGAGAGCTCTCTCGAGAGTGACACCTCCGTGCCAGA
GAAGACAAAGCTCTTCGTTGGAAACCTATCATGGGGCACTACTGATGAAT
CTCTTGGCGCTGCCTTTTCCGAGTTTGGAACTATCGTCGATTCTCGTGTC
ATTATGGATCGCTTTACTGGAAAGTCTCGTGGTTTTGGCTTCATTGAATA
CGAGGCTCCTGATTCCGCTTCCCAAGCCTTGCTCAAGATGAATGGTGTGG
AAATTGACGGCAGGGCAGTTCGTGTTGATCGCGCAACTCGTCGTAACAGA
CAGCGTTCGCGGGAGGAGTACTATTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1673420..1673896+

>Gchil4255.t1 ID=Gchil4255.t1|Name=Gchil4255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00004373_pilon:1673420..1673896+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCTTCGTCGCCCCGACAGCCTTCTCTGTCAGTAAGCTTAACCT
CGGATCTACTGCAACTTCGTACCACGGGGTCAAGTTCAGGACCGCCCCCG
TCCGTCCCTCCTCAATTCCGCGCACAGCTGCTCCAAAGTCCCAGGTACCG
CACATGGTCGAAGACGAGAGCTCTCTCGAGAGTGACACCTCCGTGCCAGA
GAAGACAAAGCTCTTCGTTGGAAACCTATCATGGGGCACTACTGATGAAT
CTCTTGGCGCTGCCTTTTCCGAGTTTGGAACTATCGTCGATTCTCGTGTC
ATTATGGATCGCTTTACTGGAAAGTCTCGTGGTTTTGGCTTCATTGAATA
CGAGGCTCCTGATTCCGCTTCCCAAGCCTTGCTCAAGATGAATGGTGTGG
AAATTGACGGCAGGGCAGTTCGTGTTGATCGCGCAACTCGTCGTAACAGA
CAGCGTTCGCGGGAGGAGTACTATTAG
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