Gchil4246.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4246.t1
Unique NameGchil4246.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1657287..1658453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010683102.1
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K08850
GOsGO:0000226,GO:0000228,GO:0000278,GO:0000775,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008152,GO:0009987,GO:0010564,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0022402,GO:0031974,GO:0031981,GO:0032133,GO:0032465,GO:0032991,GO:0035173,GO:0035174,GO:0035175,GO:0035404,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043987,GO:0043988,GO:0044022,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051233,GO:0051276,GO:0051302,GO:0051726,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140096,GO:1901564,GO:1902850,GO:1903047
Evalue8.46e-30
EggNOG OGsKOG0580@1|root,KOG0580@2759|Eukaryota,37MRX@33090|Viridiplantae,3GE7G@35493|Streptophyta
EC2.7.11.1
Descriptionbelongs to the protein kinase superfamily
COG categoryT
BRITEko00000,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4246Gchil4246Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1657287..1658453 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4246.t1.stop1Gchil4246.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1657287..1657289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4246.t1.CDS1Gchil4246.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1657287..1658453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4246.t1.exon1Gchil4246.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1657287..1658453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4246.t1.start1Gchil4246.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1658451..1658453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4246.t1Gchil4246.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1657287..1658453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4246.t1 ID=Gchil4246.t1|Name=Gchil4246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=389bp
MSQLLPNSVPGYIIERQLGEGTAGVVYAARSLSHSSQYHRAHNSIPHNVA
VKIIPRSKVRQAVRREVALQIALRHPNIARLYHVAPLSVRTQRHSHSISS
QLALALIMDCAPAGDMFSQVAATGSLPPRILRQRLRHICQALQYLHSNNI
AHLDVKLENVVICHDSVAKLIDFGCARRLDEKPDPSQPVPLAGTLHYLCP
ELLKNPAHPPAASSDAWSLGVLAYTALAGMYPFNGARRAYTEEQSDAATK
RRILDASPHRIPSCVNVPSDLRTIIDGLLQKDVGNRMTIPQVIQILDKSI
SVSPIVCSQRCPQQEQQQPSKFDIARPPSPTAPADADFSESHVVQTVDEA
LYVVEDVQNNRLRPVAHTARHHFPNRAHDRIQITDRTN*
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spliced messenger RNA

>Gchil4246.t1 ID=Gchil4246.t1|Name=Gchil4246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00004373_pilon:1657287..1658453- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAACTACTTCCCAACTCCGTCCCCGGCTACATCATCGAGCGTCA
GCTCGGCGAGGGCACCGCCGGCGTCGTGTACGCCGCCAGATCTCTTTCGC
ACTCCTCGCAGTACCATCGCGCCCACAACTCCATCCCGCACAACGTCGCC
GTCAAGATCATCCCCCGCTCAAAGGTTCGACAAGCCGTGCGACGAGAAGT
GGCCCTGCAGATCGCCCTCCGCCACCCAAACATTGCCCGTCTCTACCATG
TCGCCCCGCTCTCCGTCCGCACTCAACGCCACTCCCACTCCATCTCTTCG
CAACTGGCGCTGGCACTCATCATGGACTGCGCCCCAGCGGGCGACATGTT
CAGTCAAGTGGCCGCAACCGGCAGTCTGCCCCCGCGCATTCTTCGCCAAC
GCCTCCGCCACATCTGCCAAGCTCTTCAATACCTTCACTCAAACAACATT
GCCCATCTGGACGTCAAGCTTGAGAACGTGGTCATTTGCCACGATTCCGT
CGCCAAGCTCATCGACTTTGGATGTGCACGTCGCCTCGACGAGAAGCCCG
ACCCATCACAGCCGGTTCCGCTCGCTGGCACTCTCCACTACTTGTGTCCG
GAGCTGTTGAAAAACCCCGCACACCCCCCGGCCGCTTCTTCGGACGCCTG
GTCCTTGGGCGTGCTTGCTTACACTGCTCTGGCCGGAATGTACCCATTCA
ACGGAGCAAGAAGAGCCTACACTGAGGAACAGTCCGACGCCGCCACCAAG
CGTCGCATTCTTGACGCTTCACCACACCGCATTCCGTCTTGTGTCAATGT
GCCCTCCGACCTTCGAACCATCATTGACGGTCTGCTGCAAAAGGACGTTG
GTAACAGGATGACTATTCCTCAGGTCATCCAAATCTTGGACAAATCAATC
AGTGTGTCGCCTATCGTTTGCTCTCAACGCTGCCCTCAACAAGAGCAACA
ACAACCGAGCAAGTTCGATATAGCCAGACCACCCTCACCCACTGCGCCCG
CAGACGCTGACTTTTCCGAATCGCATGTCGTTCAAACTGTCGACGAGGCA
CTGTACGTCGTTGAAGACGTGCAGAACAACCGCCTGCGTCCGGTTGCACA
CACCGCACGGCACCACTTTCCCAACAGAGCACACGATCGCATCCAAATAA
CTGATCGTACCAATTGA
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protein sequence of Gchil4246.t1

>Gchil4246.t1 ID=Gchil4246.t1|Name=Gchil4246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=389bp
MSQLLPNSVPGYIIERQLGEGTAGVVYAARSLSHSSQYHRAHNSIPHNVA
VKIIPRSKVRQAVRREVALQIALRHPNIARLYHVAPLSVRTQRHSHSISS
QLALALIMDCAPAGDMFSQVAATGSLPPRILRQRLRHICQALQYLHSNNI
AHLDVKLENVVICHDSVAKLIDFGCARRLDEKPDPSQPVPLAGTLHYLCP
ELLKNPAHPPAASSDAWSLGVLAYTALAGMYPFNGARRAYTEEQSDAATK
RRILDASPHRIPSCVNVPSDLRTIIDGLLQKDVGNRMTIPQVIQILDKSI
SVSPIVCSQRCPQQEQQQPSKFDIARPPSPTAPADADFSESHVVQTVDEA
LYVVEDVQNNRLRPVAHTARHHFPNRAHDRIQITDRTN*
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mRNA from alignment at tig00004373_pilon:1657287..1658453-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4246.t1 ID=Gchil4246.t1|Name=Gchil4246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00004373_pilon:1657287..1658453- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAACTACTTCCCAACTCCGTCCCCGGCTACATCATCGAGCGTCA
GCTCGGCGAGGGCACCGCCGGCGTCGTGTACGCCGCCAGATCTCTTTCGC
ACTCCTCGCAGTACCATCGCGCCCACAACTCCATCCCGCACAACGTCGCC
GTCAAGATCATCCCCCGCTCAAAGGTTCGACAAGCCGTGCGACGAGAAGT
GGCCCTGCAGATCGCCCTCCGCCACCCAAACATTGCCCGTCTCTACCATG
TCGCCCCGCTCTCCGTCCGCACTCAACGCCACTCCCACTCCATCTCTTCG
CAACTGGCGCTGGCACTCATCATGGACTGCGCCCCAGCGGGCGACATGTT
CAGTCAAGTGGCCGCAACCGGCAGTCTGCCCCCGCGCATTCTTCGCCAAC
GCCTCCGCCACATCTGCCAAGCTCTTCAATACCTTCACTCAAACAACATT
GCCCATCTGGACGTCAAGCTTGAGAACGTGGTCATTTGCCACGATTCCGT
CGCCAAGCTCATCGACTTTGGATGTGCACGTCGCCTCGACGAGAAGCCCG
ACCCATCACAGCCGGTTCCGCTCGCTGGCACTCTCCACTACTTGTGTCCG
GAGCTGTTGAAAAACCCCGCACACCCCCCGGCCGCTTCTTCGGACGCCTG
GTCCTTGGGCGTGCTTGCTTACACTGCTCTGGCCGGAATGTACCCATTCA
ACGGAGCAAGAAGAGCCTACACTGAGGAACAGTCCGACGCCGCCACCAAG
CGTCGCATTCTTGACGCTTCACCACACCGCATTCCGTCTTGTGTCAATGT
GCCCTCCGACCTTCGAACCATCATTGACGGTCTGCTGCAAAAGGACGTTG
GTAACAGGATGACTATTCCTCAGGTCATCCAAATCTTGGACAAATCAATC
AGTGTGTCGCCTATCGTTTGCTCTCAACGCTGCCCTCAACAAGAGCAACA
ACAACCGAGCAAGTTCGATATAGCCAGACCACCCTCACCCACTGCGCCCG
CAGACGCTGACTTTTCCGAATCGCATGTCGTTCAAACTGTCGACGAGGCA
CTGTACGTCGTTGAAGACGTGCAGAACAACCGCCTGCGTCCGGTTGCACA
CACCGCACGGCACCACTTTCCCAACAGAGCACACGATCGCATCCAAATAA
CTGATCGTACCAATTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1657287..1658453-

>Gchil4246.t1 ID=Gchil4246.t1|Name=Gchil4246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00004373_pilon:1657287..1658453- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAACTACTTCCCAACTCCGTCCCCGGCTACATCATCGAGCGTCA
GCTCGGCGAGGGCACCGCCGGCGTCGTGTACGCCGCCAGATCTCTTTCGC
ACTCCTCGCAGTACCATCGCGCCCACAACTCCATCCCGCACAACGTCGCC
GTCAAGATCATCCCCCGCTCAAAGGTTCGACAAGCCGTGCGACGAGAAGT
GGCCCTGCAGATCGCCCTCCGCCACCCAAACATTGCCCGTCTCTACCATG
TCGCCCCGCTCTCCGTCCGCACTCAACGCCACTCCCACTCCATCTCTTCG
CAACTGGCGCTGGCACTCATCATGGACTGCGCCCCAGCGGGCGACATGTT
CAGTCAAGTGGCCGCAACCGGCAGTCTGCCCCCGCGCATTCTTCGCCAAC
GCCTCCGCCACATCTGCCAAGCTCTTCAATACCTTCACTCAAACAACATT
GCCCATCTGGACGTCAAGCTTGAGAACGTGGTCATTTGCCACGATTCCGT
CGCCAAGCTCATCGACTTTGGATGTGCACGTCGCCTCGACGAGAAGCCCG
ACCCATCACAGCCGGTTCCGCTCGCTGGCACTCTCCACTACTTGTGTCCG
GAGCTGTTGAAAAACCCCGCACACCCCCCGGCCGCTTCTTCGGACGCCTG
GTCCTTGGGCGTGCTTGCTTACACTGCTCTGGCCGGAATGTACCCATTCA
ACGGAGCAAGAAGAGCCTACACTGAGGAACAGTCCGACGCCGCCACCAAG
CGTCGCATTCTTGACGCTTCACCACACCGCATTCCGTCTTGTGTCAATGT
GCCCTCCGACCTTCGAACCATCATTGACGGTCTGCTGCAAAAGGACGTTG
GTAACAGGATGACTATTCCTCAGGTCATCCAAATCTTGGACAAATCAATC
AGTGTGTCGCCTATCGTTTGCTCTCAACGCTGCCCTCAACAAGAGCAACA
ACAACCGAGCAAGTTCGATATAGCCAGACCACCCTCACCCACTGCGCCCG
CAGACGCTGACTTTTCCGAATCGCATGTCGTTCAAACTGTCGACGAGGCA
CTGTACGTCGTTGAAGACGTGCAGAACAACCGCCTGCGTCCGGTTGCACA
CACCGCACGGCACCACTTTCCCAACAGAGCACACGATCGCATCCAAATAA
CTGATCGTACCAATTGA
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