Gchil4229.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4229.t1
Unique NameGchil4229.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1573824..1574813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_010856-tr
Preferred nameBUB3
PFAMsWD40
Max annot lvl33208|Metazoa
KEGG koko:K02180
KEGG Pathwayko04110,ko04111,ko05166,map04110,map04111,map05166
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008608,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009987,GO:0010498,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031577,GO:0031974,GO:0031981,GO:0032182,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033597,GO:0040020,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044779,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051603,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0098687,GO:0098813,GO:0140014,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1903046,GO:1903047,GO:1905132,GO:1905133,GO:1905818,GO:1905819,GO:1990298,GO:2000241,GO:2000242,GO:2000816,GO:2001251
Evalue4.73e-63
EggNOG OGsKOG1036@1|root,KOG1036@2759|Eukaryota,38HXP@33154|Opisthokonta,3BBVG@33208|Metazoa,3D0BV@33213|Bilateria
Descriptionmitotic spindle assembly checkpoint
COG categoryD
BRITEko00000,ko00001,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4229Gchil4229Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1573824..1574813 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4229.t1.start1Gchil4229.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1573824..1573826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4229.t1.CDS1Gchil4229.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1573824..1574813 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4229.t1.exon1Gchil4229.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1573824..1574813 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4229.t1.stop1Gchil4229.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1574811..1574813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4229.t1Gchil4229.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1573824..1574813 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4229.t1 ID=Gchil4229.t1|Name=Gchil4229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=330bp
MTSSLYATLAMDPAPQDAISRVTFGPNNSSLILVSSWAGTVAIYDVTTCT
LKRETNLNSVVLDSTWVNDSMVTAGALDGTVALGIVREHTLESRTLGLHA
DGVRAVSCLPDHGLIASGGWDSRLMLWDVRVNDRLASIDAGGKVYGSAPC
GQHGIAFITSNLQIRLIDTRNPSQFLYDVVPNTLSYQLRGISSSRDGKKI
VVGSTEGRVAVEYIDDPPRSYSFRCHRVEDIAYPINCVVHNHKYSSFTTG
GADGYVSFWDGDAKKRITQFSRYPTSVASLDFNTEVKRIAVAVSYTFEEG
EKDHPPDEVIVRAVDETHLATRDTTRNLQ*
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spliced messenger RNA

>Gchil4229.t1 ID=Gchil4229.t1|Name=Gchil4229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00004373_pilon:1573824..1574813+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCCAGCCTCTACGCCACATTGGCCATGGATCCTGCCCCGCAGGA
CGCCATCTCGCGCGTCACATTTGGCCCCAACAACTCCTCCCTCATCCTCG
TCTCCTCTTGGGCCGGCACCGTGGCCATCTACGATGTCACCACCTGCACC
CTGAAAAGAGAGACCAACCTCAACTCCGTTGTGCTCGACTCCACCTGGGT
AAACGATTCTATGGTCACGGCCGGCGCCTTGGATGGCACAGTTGCGCTAG
GGATCGTGCGCGAGCACACTTTAGAGTCTCGCACCCTTGGTCTCCACGCC
GACGGCGTGCGCGCCGTCTCCTGCCTTCCCGACCACGGTCTTATCGCCTC
CGGCGGCTGGGACTCGCGCTTGATGCTCTGGGACGTGCGCGTCAACGACC
GCCTCGCCTCCATTGATGCAGGCGGCAAGGTGTATGGGAGCGCCCCTTGT
GGTCAACATGGCATTGCTTTCATCACTTCAAACCTTCAAATACGCCTCAT
TGACACTCGCAATCCCTCTCAGTTTTTGTATGATGTCGTCCCAAACACCC
TTTCGTACCAGTTGAGAGGCATAAGCTCGTCGCGGGACGGCAAGAAAATT
GTTGTCGGAAGCACTGAGGGCCGCGTTGCCGTCGAGTACATTGATGATCC
ACCGCGTTCGTATTCTTTCAGATGCCATCGTGTCGAAGATATCGCCTATC
CGATCAATTGCGTAGTTCACAACCACAAGTATTCCTCCTTCACCACGGGC
GGTGCCGATGGCTACGTGTCTTTCTGGGATGGTGATGCCAAAAAGCGCAT
TACACAGTTCTCGAGATACCCAACCAGTGTCGCCTCCTTAGACTTCAACA
CGGAGGTAAAGCGAATCGCCGTCGCAGTGTCCTACACCTTTGAAGAGGGC
GAAAAAGATCATCCTCCTGATGAAGTTATCGTTAGAGCTGTTGATGAGAC
TCACCTTGCCACTCGAGACACCACGCGCAACTTGCAATGA
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protein sequence of Gchil4229.t1

>Gchil4229.t1 ID=Gchil4229.t1|Name=Gchil4229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=330bp
MTSSLYATLAMDPAPQDAISRVTFGPNNSSLILVSSWAGTVAIYDVTTCT
LKRETNLNSVVLDSTWVNDSMVTAGALDGTVALGIVREHTLESRTLGLHA
DGVRAVSCLPDHGLIASGGWDSRLMLWDVRVNDRLASIDAGGKVYGSAPC
GQHGIAFITSNLQIRLIDTRNPSQFLYDVVPNTLSYQLRGISSSRDGKKI
VVGSTEGRVAVEYIDDPPRSYSFRCHRVEDIAYPINCVVHNHKYSSFTTG
GADGYVSFWDGDAKKRITQFSRYPTSVASLDFNTEVKRIAVAVSYTFEEG
EKDHPPDEVIVRAVDETHLATRDTTRNLQ*
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mRNA from alignment at tig00004373_pilon:1573824..1574813+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4229.t1 ID=Gchil4229.t1|Name=Gchil4229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00004373_pilon:1573824..1574813+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCCAGCCTCTACGCCACATTGGCCATGGATCCTGCCCCGCAGGA
CGCCATCTCGCGCGTCACATTTGGCCCCAACAACTCCTCCCTCATCCTCG
TCTCCTCTTGGGCCGGCACCGTGGCCATCTACGATGTCACCACCTGCACC
CTGAAAAGAGAGACCAACCTCAACTCCGTTGTGCTCGACTCCACCTGGGT
AAACGATTCTATGGTCACGGCCGGCGCCTTGGATGGCACAGTTGCGCTAG
GGATCGTGCGCGAGCACACTTTAGAGTCTCGCACCCTTGGTCTCCACGCC
GACGGCGTGCGCGCCGTCTCCTGCCTTCCCGACCACGGTCTTATCGCCTC
CGGCGGCTGGGACTCGCGCTTGATGCTCTGGGACGTGCGCGTCAACGACC
GCCTCGCCTCCATTGATGCAGGCGGCAAGGTGTATGGGAGCGCCCCTTGT
GGTCAACATGGCATTGCTTTCATCACTTCAAACCTTCAAATACGCCTCAT
TGACACTCGCAATCCCTCTCAGTTTTTGTATGATGTCGTCCCAAACACCC
TTTCGTACCAGTTGAGAGGCATAAGCTCGTCGCGGGACGGCAAGAAAATT
GTTGTCGGAAGCACTGAGGGCCGCGTTGCCGTCGAGTACATTGATGATCC
ACCGCGTTCGTATTCTTTCAGATGCCATCGTGTCGAAGATATCGCCTATC
CGATCAATTGCGTAGTTCACAACCACAAGTATTCCTCCTTCACCACGGGC
GGTGCCGATGGCTACGTGTCTTTCTGGGATGGTGATGCCAAAAAGCGCAT
TACACAGTTCTCGAGATACCCAACCAGTGTCGCCTCCTTAGACTTCAACA
CGGAGGTAAAGCGAATCGCCGTCGCAGTGTCCTACACCTTTGAAGAGGGC
GAAAAAGATCATCCTCCTGATGAAGTTATCGTTAGAGCTGTTGATGAGAC
TCACCTTGCCACTCGAGACACCACGCGCAACTTGCAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1573824..1574813+

>Gchil4229.t1 ID=Gchil4229.t1|Name=Gchil4229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00004373_pilon:1573824..1574813+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCCAGCCTCTACGCCACATTGGCCATGGATCCTGCCCCGCAGGA
CGCCATCTCGCGCGTCACATTTGGCCCCAACAACTCCTCCCTCATCCTCG
TCTCCTCTTGGGCCGGCACCGTGGCCATCTACGATGTCACCACCTGCACC
CTGAAAAGAGAGACCAACCTCAACTCCGTTGTGCTCGACTCCACCTGGGT
AAACGATTCTATGGTCACGGCCGGCGCCTTGGATGGCACAGTTGCGCTAG
GGATCGTGCGCGAGCACACTTTAGAGTCTCGCACCCTTGGTCTCCACGCC
GACGGCGTGCGCGCCGTCTCCTGCCTTCCCGACCACGGTCTTATCGCCTC
CGGCGGCTGGGACTCGCGCTTGATGCTCTGGGACGTGCGCGTCAACGACC
GCCTCGCCTCCATTGATGCAGGCGGCAAGGTGTATGGGAGCGCCCCTTGT
GGTCAACATGGCATTGCTTTCATCACTTCAAACCTTCAAATACGCCTCAT
TGACACTCGCAATCCCTCTCAGTTTTTGTATGATGTCGTCCCAAACACCC
TTTCGTACCAGTTGAGAGGCATAAGCTCGTCGCGGGACGGCAAGAAAATT
GTTGTCGGAAGCACTGAGGGCCGCGTTGCCGTCGAGTACATTGATGATCC
ACCGCGTTCGTATTCTTTCAGATGCCATCGTGTCGAAGATATCGCCTATC
CGATCAATTGCGTAGTTCACAACCACAAGTATTCCTCCTTCACCACGGGC
GGTGCCGATGGCTACGTGTCTTTCTGGGATGGTGATGCCAAAAAGCGCAT
TACACAGTTCTCGAGATACCCAACCAGTGTCGCCTCCTTAGACTTCAACA
CGGAGGTAAAGCGAATCGCCGTCGCAGTGTCCTACACCTTTGAAGAGGGC
GAAAAAGATCATCCTCCTGATGAAGTTATCGTTAGAGCTGTTGATGAGAC
TCACCTTGCCACTCGAGACACCACGCGCAACTTGCAATGA
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