Gchil4226.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4226.t1
Unique NameGchil4226.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1567139..1567942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703372.1
Preferred namebola1
PFAMsBolA,SufE
Max annot lvl2759|Eukaryota
KEGG koko:K22066
Evalue3.23e-75
EggNOG OGsCOG0271@1|root,KOG2313@2759|Eukaryota
Descriptionprotein maturation by iron-sulfur cluster transfer
COG categoryT
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4226Gchil4226Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1567139..1567942 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4226.t1.stop1Gchil4226.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1567139..1567141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4226.t1.CDS1Gchil4226.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1567139..1567942 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4226.t1.exon1Gchil4226.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1567139..1567942 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4226.t1.start1Gchil4226.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1567940..1567942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4226.t1Gchil4226.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1567139..1567942 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4226.t1 ID=Gchil4226.t1|Name=Gchil4226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MVMQKESLDLPPSLQKYVDSFAMVPDPKLRYQQLLFFAKQLPPMDSSLQV
DENRVHGCTSVVHVKVSIDENGLVRLQGDSDSQLTKGLLSLLINGLDGAT
PNEVNTVSPNFISASGLAVSLTPSRNNGFVNMLAKIKKDVAELASLDGEG
SSENSSSEASTMANGFAEDPSRPIYSAIMRKLQALKPSELLVRDDSAQHK
GHAGSKGLNGESHFTVYIVSDAFQSLSQVKRHRMVYTLLRDELSAGHIHA
VQINAKTSEEVQAAATK*
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spliced messenger RNA

>Gchil4226.t1 ID=Gchil4226.t1|Name=Gchil4226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004373_pilon:1567139..1567942- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAATGCAGAAAGAATCCCTGGATCTCCCGCCTTCACTTCAGAAGTA
TGTGGATTCCTTCGCAATGGTACCTGACCCCAAACTTCGATATCAGCAAC
TACTCTTCTTCGCTAAACAGTTGCCACCTATGGATTCATCCTTGCAAGTT
GACGAAAACAGAGTTCATGGTTGTACCAGCGTCGTTCATGTCAAGGTTTC
TATAGATGAAAATGGGTTGGTTCGACTGCAAGGTGACTCAGATTCACAAC
TTACCAAGGGGCTTCTTTCTCTACTCATCAATGGTCTTGATGGAGCCACT
CCAAACGAAGTAAATACTGTCAGCCCTAACTTCATCTCTGCTTCTGGACT
TGCAGTGTCACTCACTCCCAGCAGAAACAACGGGTTTGTCAACATGCTAG
CGAAGATAAAAAAAGACGTAGCTGAACTAGCATCGTTGGACGGTGAAGGT
TCCTCTGAGAATAGTTCATCTGAAGCTTCTACAATGGCTAATGGGTTTGC
TGAGGACCCAAGCCGCCCGATATACTCAGCAATTATGAGAAAGTTGCAAG
CGCTTAAACCCTCTGAATTACTCGTTCGGGACGACTCCGCTCAACACAAA
GGCCACGCAGGTTCAAAGGGGTTAAATGGAGAATCACATTTTACTGTATA
CATTGTGTCGGACGCATTCCAGTCGTTGAGCCAAGTGAAGAGGCATCGGA
TGGTTTACACTTTGTTACGGGATGAGCTAAGCGCAGGACATATTCACGCG
GTCCAGATCAACGCGAAAACTTCTGAAGAAGTCCAAGCTGCAGCAACTAA
GTAG
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protein sequence of Gchil4226.t1

>Gchil4226.t1 ID=Gchil4226.t1|Name=Gchil4226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MVMQKESLDLPPSLQKYVDSFAMVPDPKLRYQQLLFFAKQLPPMDSSLQV
DENRVHGCTSVVHVKVSIDENGLVRLQGDSDSQLTKGLLSLLINGLDGAT
PNEVNTVSPNFISASGLAVSLTPSRNNGFVNMLAKIKKDVAELASLDGEG
SSENSSSEASTMANGFAEDPSRPIYSAIMRKLQALKPSELLVRDDSAQHK
GHAGSKGLNGESHFTVYIVSDAFQSLSQVKRHRMVYTLLRDELSAGHIHA
VQINAKTSEEVQAAATK*
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mRNA from alignment at tig00004373_pilon:1567139..1567942-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4226.t1 ID=Gchil4226.t1|Name=Gchil4226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004373_pilon:1567139..1567942- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAATGCAGAAAGAATCCCTGGATCTCCCGCCTTCACTTCAGAAGTA
TGTGGATTCCTTCGCAATGGTACCTGACCCCAAACTTCGATATCAGCAAC
TACTCTTCTTCGCTAAACAGTTGCCACCTATGGATTCATCCTTGCAAGTT
GACGAAAACAGAGTTCATGGTTGTACCAGCGTCGTTCATGTCAAGGTTTC
TATAGATGAAAATGGGTTGGTTCGACTGCAAGGTGACTCAGATTCACAAC
TTACCAAGGGGCTTCTTTCTCTACTCATCAATGGTCTTGATGGAGCCACT
CCAAACGAAGTAAATACTGTCAGCCCTAACTTCATCTCTGCTTCTGGACT
TGCAGTGTCACTCACTCCCAGCAGAAACAACGGGTTTGTCAACATGCTAG
CGAAGATAAAAAAAGACGTAGCTGAACTAGCATCGTTGGACGGTGAAGGT
TCCTCTGAGAATAGTTCATCTGAAGCTTCTACAATGGCTAATGGGTTTGC
TGAGGACCCAAGCCGCCCGATATACTCAGCAATTATGAGAAAGTTGCAAG
CGCTTAAACCCTCTGAATTACTCGTTCGGGACGACTCCGCTCAACACAAA
GGCCACGCAGGTTCAAAGGGGTTAAATGGAGAATCACATTTTACTGTATA
CATTGTGTCGGACGCATTCCAGTCGTTGAGCCAAGTGAAGAGGCATCGGA
TGGTTTACACTTTGTTACGGGATGAGCTAAGCGCAGGACATATTCACGCG
GTCCAGATCAACGCGAAAACTTCTGAAGAAGTCCAAGCTGCAGCAACTAA
GTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1567139..1567942-

>Gchil4226.t1 ID=Gchil4226.t1|Name=Gchil4226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00004373_pilon:1567139..1567942- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAATGCAGAAAGAATCCCTGGATCTCCCGCCTTCACTTCAGAAGTA
TGTGGATTCCTTCGCAATGGTACCTGACCCCAAACTTCGATATCAGCAAC
TACTCTTCTTCGCTAAACAGTTGCCACCTATGGATTCATCCTTGCAAGTT
GACGAAAACAGAGTTCATGGTTGTACCAGCGTCGTTCATGTCAAGGTTTC
TATAGATGAAAATGGGTTGGTTCGACTGCAAGGTGACTCAGATTCACAAC
TTACCAAGGGGCTTCTTTCTCTACTCATCAATGGTCTTGATGGAGCCACT
CCAAACGAAGTAAATACTGTCAGCCCTAACTTCATCTCTGCTTCTGGACT
TGCAGTGTCACTCACTCCCAGCAGAAACAACGGGTTTGTCAACATGCTAG
CGAAGATAAAAAAAGACGTAGCTGAACTAGCATCGTTGGACGGTGAAGGT
TCCTCTGAGAATAGTTCATCTGAAGCTTCTACAATGGCTAATGGGTTTGC
TGAGGACCCAAGCCGCCCGATATACTCAGCAATTATGAGAAAGTTGCAAG
CGCTTAAACCCTCTGAATTACTCGTTCGGGACGACTCCGCTCAACACAAA
GGCCACGCAGGTTCAAAGGGGTTAAATGGAGAATCACATTTTACTGTATA
CATTGTGTCGGACGCATTCCAGTCGTTGAGCCAAGTGAAGAGGCATCGGA
TGGTTTACACTTTGTTACGGGATGAGCTAAGCGCAGGACATATTCACGCG
GTCCAGATCAACGCGAAAACTTCTGAAGAAGTCCAAGCTGCAGCAACTAA
GTAG
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