Gchil4205.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4205.t1
Unique Name	Gchil4205.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1372440..1373498 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703542.1
PFAMs	HMGL-like
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00502,RC00503,RC01118,RC01946
KEGG ko	ko:K01640
KEGG Reaction	R01360,R08090
KEGG Pathway	ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146
KEGG Module	M00036,M00088
GOs	GO:0003674,GO:0003824,GO:0004419,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0009081,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0031974,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901605
Evalue	2.53e-122
EggNOG OGs	COG0119@1\|root,KOG2368@2759\|Eukaryota
EC	4.1.3.4
Description	hydroxymethylglutaryl-CoA lyase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4205	Gchil4205	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1372440..1373498 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4205.t1.stop1	Gchil4205.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1372440..1372442 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4205.t1.CDS1	Gchil4205.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1372440..1373498 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4205.t1.exon1	Gchil4205.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1372440..1373498 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4205.t1.start1	Gchil4205.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1373496..1373498 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4205.t1	Gchil4205.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1372440..1373498 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1372440..1373498-
coding sequence from alignment at tig00004373_pilon:1372440..1373498-

mRNA sequence

>Gchil4205.t1 ID=Gchil4205.t1|Name=Gchil4205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=353bp
MSPSERLLEHPSSISSLNPFCSSSHNRSTSVPRCPVSTRLPKSVRIVEVG
PRDGLQNESRIVETSRKIALVHDLVDAGLSTVEVTAFVSPRRIPQLADST
AVMSAITREKGVSYPVLVPNLKGYHAARAAGAEEVAVFASATERFSQKNI
NCSIQQSLDRFREVTSFARLHRIKVRAYISCVVGCPYEGAVDPEAVADVA
VALRELGCYEISLGDTIGVGNPKSIVQVILAVLRRGIPASALAIHCHDTR
GMALANVLAAMSVGVSVIDSSVAGLGGCPFAPGAAGNLATEDLVYMLKGM
DIDVGPIDLGKLVTVGRQICSYLQRQPSSKYSTAPHCTAVKRSSSFRSSA
SL*

spliced messenger RNA

>Gchil4205.t1 ID=Gchil4205.t1|Name=Gchil4205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004373_pilon:1372440..1373498- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCATCTGAACGTCTTCTCGAGCACCCGTCTTCTATCAGTTCGCT
CAACCCTTTTTGTTCATCAAGTCATAATCGATCTACATCGGTTCCGCGTT
GCCCCGTTTCAACGCGACTCCCCAAATCCGTACGAATTGTTGAAGTCGGT
CCTCGCGATGGACTTCAAAACGAGTCTCGTATCGTCGAGACCTCTCGTAA
AATTGCTCTTGTTCACGATCTTGTTGACGCTGGTTTAAGTACAGTTGAAG
TAACAGCTTTCGTAAGTCCCCGACGCATACCCCAGTTAGCTGATTCAACG
GCTGTAATGTCTGCTATAACCCGCGAAAAGGGCGTGTCTTATCCAGTTCT
TGTTCCGAATCTCAAGGGCTATCATGCTGCGCGGGCCGCGGGAGCCGAAG
AAGTCGCTGTCTTTGCGAGCGCCACTGAGCGATTCTCGCAAAAGAACATA
AATTGCTCCATACAGCAATCACTAGATCGATTCAGAGAAGTCACGAGTTT
CGCACGTTTGCATCGCATCAAGGTGCGTGCCTACATTTCTTGCGTCGTTG
GTTGCCCATATGAAGGTGCTGTTGATCCGGAAGCTGTGGCCGATGTCGCT
GTAGCTTTGAGAGAACTGGGATGCTACGAGATTTCTTTAGGTGATACAAT
TGGAGTTGGAAACCCCAAATCCATCGTGCAAGTCATTCTTGCAGTATTGC
GGAGAGGCATTCCGGCGTCAGCACTGGCAATTCACTGTCATGACACAAGA
GGTATGGCTCTCGCAAACGTGTTGGCTGCTATGAGTGTTGGCGTGAGCGT
TATTGATTCCAGTGTAGCAGGACTCGGAGGCTGTCCCTTTGCTCCAGGTG
CAGCTGGAAATCTGGCTACAGAAGATCTCGTCTACATGCTAAAAGGCATG
GATATTGACGTAGGTCCCATAGATCTCGGCAAGCTTGTAACAGTCGGAAG
ACAAATTTGCTCGTATCTCCAACGCCAACCTAGCTCAAAGTATTCTACGG
CCCCTCATTGCACGGCCGTCAAACGCTCCTCGAGTTTTCGTTCGTCAGCA
TCCTTGTGA

protein sequence of Gchil4205.t1

>Gchil4205.t1 ID=Gchil4205.t1|Name=Gchil4205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=353bp
MSPSERLLEHPSSISSLNPFCSSSHNRSTSVPRCPVSTRLPKSVRIVEVG
PRDGLQNESRIVETSRKIALVHDLVDAGLSTVEVTAFVSPRRIPQLADST
AVMSAITREKGVSYPVLVPNLKGYHAARAAGAEEVAVFASATERFSQKNI
NCSIQQSLDRFREVTSFARLHRIKVRAYISCVVGCPYEGAVDPEAVADVA
VALRELGCYEISLGDTIGVGNPKSIVQVILAVLRRGIPASALAIHCHDTR
GMALANVLAAMSVGVSVIDSSVAGLGGCPFAPGAAGNLATEDLVYMLKGM
DIDVGPIDLGKLVTVGRQICSYLQRQPSSKYSTAPHCTAVKRSSSFRSSA
SL*

mRNA from alignment at tig00004373_pilon:1372440..1373498-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4205.t1 ID=Gchil4205.t1|Name=Gchil4205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004373_pilon:1372440..1373498- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCATCTGAACGTCTTCTCGAGCACCCGTCTTCTATCAGTTCGCT
CAACCCTTTTTGTTCATCAAGTCATAATCGATCTACATCGGTTCCGCGTT
GCCCCGTTTCAACGCGACTCCCCAAATCCGTACGAATTGTTGAAGTCGGT
CCTCGCGATGGACTTCAAAACGAGTCTCGTATCGTCGAGACCTCTCGTAA
AATTGCTCTTGTTCACGATCTTGTTGACGCTGGTTTAAGTACAGTTGAAG
TAACAGCTTTCGTAAGTCCCCGACGCATACCCCAGTTAGCTGATTCAACG
GCTGTAATGTCTGCTATAACCCGCGAAAAGGGCGTGTCTTATCCAGTTCT
TGTTCCGAATCTCAAGGGCTATCATGCTGCGCGGGCCGCGGGAGCCGAAG
AAGTCGCTGTCTTTGCGAGCGCCACTGAGCGATTCTCGCAAAAGAACATA
AATTGCTCCATACAGCAATCACTAGATCGATTCAGAGAAGTCACGAGTTT
CGCACGTTTGCATCGCATCAAGGTGCGTGCCTACATTTCTTGCGTCGTTG
GTTGCCCATATGAAGGTGCTGTTGATCCGGAAGCTGTGGCCGATGTCGCT
GTAGCTTTGAGAGAACTGGGATGCTACGAGATTTCTTTAGGTGATACAAT
TGGAGTTGGAAACCCCAAATCCATCGTGCAAGTCATTCTTGCAGTATTGC
GGAGAGGCATTCCGGCGTCAGCACTGGCAATTCACTGTCATGACACAAGA
GGTATGGCTCTCGCAAACGTGTTGGCTGCTATGAGTGTTGGCGTGAGCGT
TATTGATTCCAGTGTAGCAGGACTCGGAGGCTGTCCCTTTGCTCCAGGTG
CAGCTGGAAATCTGGCTACAGAAGATCTCGTCTACATGCTAAAAGGCATG
GATATTGACGTAGGTCCCATAGATCTCGGCAAGCTTGTAACAGTCGGAAG
ACAAATTTGCTCGTATCTCCAACGCCAACCTAGCTCAAAGTATTCTACGG
CCCCTCATTGCACGGCCGTCAAACGCTCCTCGAGTTTTCGTTCGTCAGCA
TCCTTGTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1372440..1373498-

>Gchil4205.t1 ID=Gchil4205.t1|Name=Gchil4205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00004373_pilon:1372440..1373498- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCATCTGAACGTCTTCTCGAGCACCCGTCTTCTATCAGTTCGCT
CAACCCTTTTTGTTCATCAAGTCATAATCGATCTACATCGGTTCCGCGTT
GCCCCGTTTCAACGCGACTCCCCAAATCCGTACGAATTGTTGAAGTCGGT
CCTCGCGATGGACTTCAAAACGAGTCTCGTATCGTCGAGACCTCTCGTAA
AATTGCTCTTGTTCACGATCTTGTTGACGCTGGTTTAAGTACAGTTGAAG
TAACAGCTTTCGTAAGTCCCCGACGCATACCCCAGTTAGCTGATTCAACG
GCTGTAATGTCTGCTATAACCCGCGAAAAGGGCGTGTCTTATCCAGTTCT
TGTTCCGAATCTCAAGGGCTATCATGCTGCGCGGGCCGCGGGAGCCGAAG
AAGTCGCTGTCTTTGCGAGCGCCACTGAGCGATTCTCGCAAAAGAACATA
AATTGCTCCATACAGCAATCACTAGATCGATTCAGAGAAGTCACGAGTTT
CGCACGTTTGCATCGCATCAAGGTGCGTGCCTACATTTCTTGCGTCGTTG
GTTGCCCATATGAAGGTGCTGTTGATCCGGAAGCTGTGGCCGATGTCGCT
GTAGCTTTGAGAGAACTGGGATGCTACGAGATTTCTTTAGGTGATACAAT
TGGAGTTGGAAACCCCAAATCCATCGTGCAAGTCATTCTTGCAGTATTGC
GGAGAGGCATTCCGGCGTCAGCACTGGCAATTCACTGTCATGACACAAGA
GGTATGGCTCTCGCAAACGTGTTGGCTGCTATGAGTGTTGGCGTGAGCGT
TATTGATTCCAGTGTAGCAGGACTCGGAGGCTGTCCCTTTGCTCCAGGTG
CAGCTGGAAATCTGGCTACAGAAGATCTCGTCTACATGCTAAAAGGCATG
GATATTGACGTAGGTCCCATAGATCTCGGCAAGCTTGTAACAGTCGGAAG
ACAAATTTGCTCGTATCTCCAACGCCAACCTAGCTCAAAGTATTCTACGG
CCCCTCATTGCACGGCCGTCAAACGCTCCTCGAGTTTTCGTTCGTCAGCA
TCCTTGTGA