Gchil4200.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4200.t1
Unique Name	Gchil4200.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	781

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1362924..1365266 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705561.1
PFAMs	Peptidase_M13,Peptidase_M13_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01415
Evalue	2.58e-160
EggNOG OGs	COG3590@1\|root,KOG3624@2759\|Eukaryota
EC	3.4.24.71
Description	metalloendopeptidase activity. It is involved in the biological process described with proteolysis
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4200	Gchil4200	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1362924..1365266 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4200.t1.stop1	Gchil4200.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1362924..1362926 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4200.t1.CDS1	Gchil4200.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1362924..1365266 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4200.t1.exon1	Gchil4200.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1362924..1365266 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4200.t1.start1	Gchil4200.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1365264..1365266 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4200.t1	Gchil4200.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1362924..1365266 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1362924..1365266-
coding sequence from alignment at tig00004373_pilon:1362924..1365266-

mRNA sequence

>Gchil4200.t1 ID=Gchil4200.t1|Name=Gchil4200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=781bp
MTHFASDSPRAAQAPSSPPHEPLQLEGYAQLSADADDDNFERHGEQQPVH
CPRSELHPLNFPPAPPGYYRRDVPMRIVHYGKLVLVLLAVALACLAIDAL
IDVSNPSNFLQPGRDRQSVADSVLAAMDRSADPCDDFYEYSCGSWLRTAS
IPTDKTQYSKSFSVVYDLIQLMLKEILDVDLQNAQPPSKPGVFYASCIDQ
MGVGSLNTLYLRPFRDQFNTLRTSAQLARLLARLHLQSSAPFFDVSTSID
EKNTTRYALYVSQGGLGLPHRDDYLLNTDRERDMREKYVTLIVNMLNVAG
KARLIPRNGNDQLAQRVLAFETVLANNSMPPEQLRDPEAVYNKILLADLP
EELKFSDYLRMLNVSEHRLGGSIILDNVPFLKLVARLFHAMDGNSNASKV
VKGYLAFHLVRSAAQEGLLGEKAYHDTFKFKQHVYGLKQLPDKWKFCQTL
TTKHLGEALGAAFVKKHFPESRKTVAVDLAKEISKSFADTLQSESWMDKT
TIDAALQKLDAINWKVGYSEDLDTYDDVHISTSFQSNVNSAIAHKWRKSL
NHLGNPIDKTEWFMNPHQVNAYYSVTRNEMVFPAGILQQPFFSDAYPEAM
NYGSIGAVIGHEMSHGFDDQGRQYDKDGMLTPWWSDSSVSQYKEKAQCYI
DLFDTYKPRDVDIHVRGNLTLGENLADTNGVNVAFRAFKRRANNSEDGIP
PPNALLARELTNDQLFFVAYAQTWCTLYRHEALKVDIMTDPHSPGKFRVL
GPLSQSSVFAETFSCRNGSRYNPVTRCQLW*

spliced messenger RNA

>Gchil4200.t1 ID=Gchil4200.t1|Name=Gchil4200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at tig00004373_pilon:1362924..1365266- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCATTTCGCGTCCGACTCACCGCGCGCGGCGCAGGCACCTTCATC
GCCGCCGCACGAACCCCTCCAGCTCGAGGGCTACGCGCAGCTCAGCGCCG
ATGCCGACGATGACAATTTTGAGCGTCACGGCGAGCAGCAGCCTGTGCAT
TGCCCACGGTCTGAGTTGCATCCGCTCAACTTCCCGCCCGCACCGCCTGG
CTATTACCGTCGCGACGTGCCTATGCGCATCGTGCACTATGGAAAGCTCG
TGCTTGTGTTGCTCGCCGTCGCGCTCGCCTGTCTTGCCATTGATGCCCTC
ATCGATGTCTCTAACCCGTCCAACTTCTTGCAGCCCGGCCGCGACCGCCA
GTCCGTCGCGGACTCCGTTCTGGCCGCCATGGATCGCAGCGCCGACCCGT
GCGACGACTTTTACGAGTACTCCTGCGGTTCGTGGCTCAGAACTGCCTCC
ATCCCCACCGACAAGACCCAGTACTCCAAGTCCTTCAGCGTTGTCTATGA
CCTCATCCAGCTCATGCTCAAGGAGATCCTCGACGTTGATCTGCAAAACG
CCCAGCCCCCGTCCAAACCGGGCGTCTTTTATGCCTCGTGCATCGACCAG
ATGGGCGTTGGCTCCCTCAACACCCTCTACCTCCGCCCGTTCCGCGATCA
ATTCAACACCTTGCGCACCTCCGCCCAGCTCGCCCGTCTCTTGGCCCGAC
TTCATCTACAATCCTCCGCGCCCTTTTTTGACGTGTCCACCAGCATCGAC
GAGAAGAACACCACTCGCTACGCGCTCTACGTCTCCCAGGGCGGCTTGGG
TCTGCCGCACCGAGACGACTACCTGCTGAATACCGATCGCGAGCGCGACA
TGAGGGAAAAGTACGTCACCCTCATAGTCAATATGCTCAATGTTGCCGGC
AAGGCGCGCCTCATTCCCCGCAATGGCAACGACCAGCTTGCGCAGCGCGT
ACTCGCCTTTGAAACCGTGCTGGCGAACAACTCCATGCCCCCAGAGCAGT
TGCGAGATCCGGAAGCCGTGTACAACAAAATTTTGCTCGCAGACTTGCCC
GAAGAGCTCAAGTTTTCGGACTACCTCCGCATGCTCAACGTCAGCGAGCA
CCGTCTTGGAGGCTCCATCATTTTGGACAACGTGCCGTTTCTCAAGCTTG
TTGCACGACTGTTTCACGCCATGGACGGCAACTCCAACGCAAGCAAGGTT
GTGAAAGGTTACCTTGCCTTCCATCTTGTGCGCTCGGCCGCGCAAGAAGG
TCTTTTGGGTGAAAAGGCGTATCATGACACCTTCAAGTTTAAGCAGCACG
TGTACGGCTTGAAGCAACTCCCGGACAAGTGGAAGTTCTGCCAAACGCTC
ACCACTAAGCACCTGGGAGAGGCACTGGGTGCCGCGTTTGTTAAAAAGCA
CTTCCCTGAGAGTCGCAAGACGGTGGCCGTCGATCTGGCTAAGGAGATTT
CCAAGTCGTTTGCCGACACTCTTCAGTCAGAGTCTTGGATGGATAAGACC
ACCATAGATGCCGCCCTACAAAAGCTGGACGCCATCAATTGGAAGGTTGG
TTATAGTGAAGACTTGGACACATACGACGACGTCCACATTTCGACCTCCT
TCCAGAGCAACGTCAATTCTGCCATTGCGCACAAATGGCGAAAGTCTTTA
AACCATTTGGGCAATCCCATCGATAAGACTGAATGGTTTATGAATCCCCA
CCAAGTCAACGCGTACTATTCTGTTACTCGGAACGAAATGGTGTTCCCCG
CCGGAATATTGCAACAACCGTTCTTCTCGGATGCGTACCCAGAGGCGATG
AACTACGGTAGCATCGGTGCAGTGATTGGGCATGAAATGTCACACGGATT
TGACGACCAAGGTCGTCAGTACGACAAAGACGGCATGTTAACTCCATGGT
GGTCCGATTCTTCTGTATCGCAGTACAAAGAAAAGGCACAATGTTACATC
GACCTTTTTGACACATACAAGCCGCGCGACGTTGACATTCACGTTCGCGG
CAACCTTACCTTGGGCGAAAATCTCGCCGACACCAACGGCGTAAACGTCG
CTTTTCGTGCATTCAAGAGGAGGGCAAACAACAGTGAAGATGGCATTCCT
CCGCCCAATGCGCTGCTGGCGAGAGAGCTCACAAATGACCAGCTATTTTT
CGTGGCGTATGCGCAAACTTGGTGCACACTTTACCGCCACGAGGCGCTGA
AAGTAGATATTATGACAGATCCACACTCCCCGGGAAAGTTTCGAGTTCTC
GGGCCGTTGAGCCAGAGTTCTGTCTTCGCGGAAACCTTTTCCTGTCGGAA
TGGAAGTAGGTATAATCCTGTCACACGGTGCCAACTGTGGTAA

protein sequence of Gchil4200.t1

>Gchil4200.t1 ID=Gchil4200.t1|Name=Gchil4200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=781bp
MTHFASDSPRAAQAPSSPPHEPLQLEGYAQLSADADDDNFERHGEQQPVH
CPRSELHPLNFPPAPPGYYRRDVPMRIVHYGKLVLVLLAVALACLAIDAL
IDVSNPSNFLQPGRDRQSVADSVLAAMDRSADPCDDFYEYSCGSWLRTAS
IPTDKTQYSKSFSVVYDLIQLMLKEILDVDLQNAQPPSKPGVFYASCIDQ
MGVGSLNTLYLRPFRDQFNTLRTSAQLARLLARLHLQSSAPFFDVSTSID
EKNTTRYALYVSQGGLGLPHRDDYLLNTDRERDMREKYVTLIVNMLNVAG
KARLIPRNGNDQLAQRVLAFETVLANNSMPPEQLRDPEAVYNKILLADLP
EELKFSDYLRMLNVSEHRLGGSIILDNVPFLKLVARLFHAMDGNSNASKV
VKGYLAFHLVRSAAQEGLLGEKAYHDTFKFKQHVYGLKQLPDKWKFCQTL
TTKHLGEALGAAFVKKHFPESRKTVAVDLAKEISKSFADTLQSESWMDKT
TIDAALQKLDAINWKVGYSEDLDTYDDVHISTSFQSNVNSAIAHKWRKSL
NHLGNPIDKTEWFMNPHQVNAYYSVTRNEMVFPAGILQQPFFSDAYPEAM
NYGSIGAVIGHEMSHGFDDQGRQYDKDGMLTPWWSDSSVSQYKEKAQCYI
DLFDTYKPRDVDIHVRGNLTLGENLADTNGVNVAFRAFKRRANNSEDGIP
PPNALLARELTNDQLFFVAYAQTWCTLYRHEALKVDIMTDPHSPGKFRVL
GPLSQSSVFAETFSCRNGSRYNPVTRCQLW*

mRNA from alignment at tig00004373_pilon:1362924..1365266-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4200.t1 ID=Gchil4200.t1|Name=Gchil4200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at tig00004373_pilon:1362924..1365266- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCATTTCGCGTCCGACTCACCGCGCGCGGCGCAGGCACCTTCATC
GCCGCCGCACGAACCCCTCCAGCTCGAGGGCTACGCGCAGCTCAGCGCCG
ATGCCGACGATGACAATTTTGAGCGTCACGGCGAGCAGCAGCCTGTGCAT
TGCCCACGGTCTGAGTTGCATCCGCTCAACTTCCCGCCCGCACCGCCTGG
CTATTACCGTCGCGACGTGCCTATGCGCATCGTGCACTATGGAAAGCTCG
TGCTTGTGTTGCTCGCCGTCGCGCTCGCCTGTCTTGCCATTGATGCCCTC
ATCGATGTCTCTAACCCGTCCAACTTCTTGCAGCCCGGCCGCGACCGCCA
GTCCGTCGCGGACTCCGTTCTGGCCGCCATGGATCGCAGCGCCGACCCGT
GCGACGACTTTTACGAGTACTCCTGCGGTTCGTGGCTCAGAACTGCCTCC
ATCCCCACCGACAAGACCCAGTACTCCAAGTCCTTCAGCGTTGTCTATGA
CCTCATCCAGCTCATGCTCAAGGAGATCCTCGACGTTGATCTGCAAAACG
CCCAGCCCCCGTCCAAACCGGGCGTCTTTTATGCCTCGTGCATCGACCAG
ATGGGCGTTGGCTCCCTCAACACCCTCTACCTCCGCCCGTTCCGCGATCA
ATTCAACACCTTGCGCACCTCCGCCCAGCTCGCCCGTCTCTTGGCCCGAC
TTCATCTACAATCCTCCGCGCCCTTTTTTGACGTGTCCACCAGCATCGAC
GAGAAGAACACCACTCGCTACGCGCTCTACGTCTCCCAGGGCGGCTTGGG
TCTGCCGCACCGAGACGACTACCTGCTGAATACCGATCGCGAGCGCGACA
TGAGGGAAAAGTACGTCACCCTCATAGTCAATATGCTCAATGTTGCCGGC
AAGGCGCGCCTCATTCCCCGCAATGGCAACGACCAGCTTGCGCAGCGCGT
ACTCGCCTTTGAAACCGTGCTGGCGAACAACTCCATGCCCCCAGAGCAGT
TGCGAGATCCGGAAGCCGTGTACAACAAAATTTTGCTCGCAGACTTGCCC
GAAGAGCTCAAGTTTTCGGACTACCTCCGCATGCTCAACGTCAGCGAGCA
CCGTCTTGGAGGCTCCATCATTTTGGACAACGTGCCGTTTCTCAAGCTTG
TTGCACGACTGTTTCACGCCATGGACGGCAACTCCAACGCAAGCAAGGTT
GTGAAAGGTTACCTTGCCTTCCATCTTGTGCGCTCGGCCGCGCAAGAAGG
TCTTTTGGGTGAAAAGGCGTATCATGACACCTTCAAGTTTAAGCAGCACG
TGTACGGCTTGAAGCAACTCCCGGACAAGTGGAAGTTCTGCCAAACGCTC
ACCACTAAGCACCTGGGAGAGGCACTGGGTGCCGCGTTTGTTAAAAAGCA
CTTCCCTGAGAGTCGCAAGACGGTGGCCGTCGATCTGGCTAAGGAGATTT
CCAAGTCGTTTGCCGACACTCTTCAGTCAGAGTCTTGGATGGATAAGACC
ACCATAGATGCCGCCCTACAAAAGCTGGACGCCATCAATTGGAAGGTTGG
TTATAGTGAAGACTTGGACACATACGACGACGTCCACATTTCGACCTCCT
TCCAGAGCAACGTCAATTCTGCCATTGCGCACAAATGGCGAAAGTCTTTA
AACCATTTGGGCAATCCCATCGATAAGACTGAATGGTTTATGAATCCCCA
CCAAGTCAACGCGTACTATTCTGTTACTCGGAACGAAATGGTGTTCCCCG
CCGGAATATTGCAACAACCGTTCTTCTCGGATGCGTACCCAGAGGCGATG
AACTACGGTAGCATCGGTGCAGTGATTGGGCATGAAATGTCACACGGATT
TGACGACCAAGGTCGTCAGTACGACAAAGACGGCATGTTAACTCCATGGT
GGTCCGATTCTTCTGTATCGCAGTACAAAGAAAAGGCACAATGTTACATC
GACCTTTTTGACACATACAAGCCGCGCGACGTTGACATTCACGTTCGCGG
CAACCTTACCTTGGGCGAAAATCTCGCCGACACCAACGGCGTAAACGTCG
CTTTTCGTGCATTCAAGAGGAGGGCAAACAACAGTGAAGATGGCATTCCT
CCGCCCAATGCGCTGCTGGCGAGAGAGCTCACAAATGACCAGCTATTTTT
CGTGGCGTATGCGCAAACTTGGTGCACACTTTACCGCCACGAGGCGCTGA
AAGTAGATATTATGACAGATCCACACTCCCCGGGAAAGTTTCGAGTTCTC
GGGCCGTTGAGCCAGAGTTCTGTCTTCGCGGAAACCTTTTCCTGTCGGAA
TGGAAGTAGGTATAATCCTGTCACACGGTGCCAACTGTGGTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:1362924..1365266-

>Gchil4200.t1 ID=Gchil4200.t1|Name=Gchil4200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2343bp|location=Sequence derived from alignment at tig00004373_pilon:1362924..1365266- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCATTTCGCGTCCGACTCACCGCGCGCGGCGCAGGCACCTTCATC
GCCGCCGCACGAACCCCTCCAGCTCGAGGGCTACGCGCAGCTCAGCGCCG
ATGCCGACGATGACAATTTTGAGCGTCACGGCGAGCAGCAGCCTGTGCAT
TGCCCACGGTCTGAGTTGCATCCGCTCAACTTCCCGCCCGCACCGCCTGG
CTATTACCGTCGCGACGTGCCTATGCGCATCGTGCACTATGGAAAGCTCG
TGCTTGTGTTGCTCGCCGTCGCGCTCGCCTGTCTTGCCATTGATGCCCTC
ATCGATGTCTCTAACCCGTCCAACTTCTTGCAGCCCGGCCGCGACCGCCA
GTCCGTCGCGGACTCCGTTCTGGCCGCCATGGATCGCAGCGCCGACCCGT
GCGACGACTTTTACGAGTACTCCTGCGGTTCGTGGCTCAGAACTGCCTCC
ATCCCCACCGACAAGACCCAGTACTCCAAGTCCTTCAGCGTTGTCTATGA
CCTCATCCAGCTCATGCTCAAGGAGATCCTCGACGTTGATCTGCAAAACG
CCCAGCCCCCGTCCAAACCGGGCGTCTTTTATGCCTCGTGCATCGACCAG
ATGGGCGTTGGCTCCCTCAACACCCTCTACCTCCGCCCGTTCCGCGATCA
ATTCAACACCTTGCGCACCTCCGCCCAGCTCGCCCGTCTCTTGGCCCGAC
TTCATCTACAATCCTCCGCGCCCTTTTTTGACGTGTCCACCAGCATCGAC
GAGAAGAACACCACTCGCTACGCGCTCTACGTCTCCCAGGGCGGCTTGGG
TCTGCCGCACCGAGACGACTACCTGCTGAATACCGATCGCGAGCGCGACA
TGAGGGAAAAGTACGTCACCCTCATAGTCAATATGCTCAATGTTGCCGGC
AAGGCGCGCCTCATTCCCCGCAATGGCAACGACCAGCTTGCGCAGCGCGT
ACTCGCCTTTGAAACCGTGCTGGCGAACAACTCCATGCCCCCAGAGCAGT
TGCGAGATCCGGAAGCCGTGTACAACAAAATTTTGCTCGCAGACTTGCCC
GAAGAGCTCAAGTTTTCGGACTACCTCCGCATGCTCAACGTCAGCGAGCA
CCGTCTTGGAGGCTCCATCATTTTGGACAACGTGCCGTTTCTCAAGCTTG
TTGCACGACTGTTTCACGCCATGGACGGCAACTCCAACGCAAGCAAGGTT
GTGAAAGGTTACCTTGCCTTCCATCTTGTGCGCTCGGCCGCGCAAGAAGG
TCTTTTGGGTGAAAAGGCGTATCATGACACCTTCAAGTTTAAGCAGCACG
TGTACGGCTTGAAGCAACTCCCGGACAAGTGGAAGTTCTGCCAAACGCTC
ACCACTAAGCACCTGGGAGAGGCACTGGGTGCCGCGTTTGTTAAAAAGCA
CTTCCCTGAGAGTCGCAAGACGGTGGCCGTCGATCTGGCTAAGGAGATTT
CCAAGTCGTTTGCCGACACTCTTCAGTCAGAGTCTTGGATGGATAAGACC
ACCATAGATGCCGCCCTACAAAAGCTGGACGCCATCAATTGGAAGGTTGG
TTATAGTGAAGACTTGGACACATACGACGACGTCCACATTTCGACCTCCT
TCCAGAGCAACGTCAATTCTGCCATTGCGCACAAATGGCGAAAGTCTTTA
AACCATTTGGGCAATCCCATCGATAAGACTGAATGGTTTATGAATCCCCA
CCAAGTCAACGCGTACTATTCTGTTACTCGGAACGAAATGGTGTTCCCCG
CCGGAATATTGCAACAACCGTTCTTCTCGGATGCGTACCCAGAGGCGATG
AACTACGGTAGCATCGGTGCAGTGATTGGGCATGAAATGTCACACGGATT
TGACGACCAAGGTCGTCAGTACGACAAAGACGGCATGTTAACTCCATGGT
GGTCCGATTCTTCTGTATCGCAGTACAAAGAAAAGGCACAATGTTACATC
GACCTTTTTGACACATACAAGCCGCGCGACGTTGACATTCACGTTCGCGG
CAACCTTACCTTGGGCGAAAATCTCGCCGACACCAACGGCGTAAACGTCG
CTTTTCGTGCATTCAAGAGGAGGGCAAACAACAGTGAAGATGGCATTCCT
CCGCCCAATGCGCTGCTGGCGAGAGAGCTCACAAATGACCAGCTATTTTT
CGTGGCGTATGCGCAAACTTGGTGCACACTTTACCGCCACGAGGCGCTGA
AAGTAGATATTATGACAGATCCACACTCCCCGGGAAAGTTTCGAGTTCTC
GGGCCGTTGAGCCAGAGTTCTGTCTTCGCGGAAACCTTTTCCTGTCGGAA
TGGAAGTAGGTATAATCCTGTCACACGGTGCCAACTGTGGTAA