Gchil4199.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4199.t1
Unique NameGchil4199.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1361421..1362274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1182553.XP_007749224.1
Preferred nameGSP1
PFAMsRas
Max annot lvl4751|Fungi
KEGG koko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
GOsGO:0000054,GO:0000166,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005085,GO:0005087,GO:0005088,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009889,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010948,GO:0010972,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016973,GO:0017016,GO:0017038,GO:0017076,GO:0017111,GO:0019001,GO:0019219,GO:0019222,GO:0019899,GO:0022613,GO:0023052,GO:0031123,GO:0031125,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033750,GO:0034470,GO:0034504,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046907,GO:0048519,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0060255,GO:0060968,GO:0065007,GO:0065009,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902749,GO:1902750,GO:1903506,GO:2000112,GO:2001141
Evalue3.07e-119
EggNOG OGsKOG0096@1|root,KOG0096@2759|Eukaryota,38BBN@33154|Opisthokonta,3NW2J@4751|Fungi,3QPIC@4890|Ascomycota,20AP3@147545|Eurotiomycetes,3MUGM@451870|Chaetothyriomycetidae
DescriptionGTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle
COG categoryU
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4199Gchil4199Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1361421..1362274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4199.t1Gchil4199.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1361421..1362274 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4199.t1.start1Gchil4199.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1361421..1361423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4199.t1.CDS1Gchil4199.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1361421..1361653 +
Gchil4199.t1.CDS2Gchil4199.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1361860..1362274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4199.t1.exon1Gchil4199.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1361421..1361653 +
Gchil4199.t1.exon2Gchil4199.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1361860..1362274 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4199.t1.intron1Gchil4199.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1361654..1361859 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4199.t1.stop1Gchil4199.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1362272..1362274 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4199.t1 ID=Gchil4199.t1|Name=Gchil4199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=216bp
MAQQNIPTFKVVLVGDGGVGKTTFVKRHITGEFEKRYIATMGVEVHPLKF
STNFGPILMNVWDTAGQEKLGGLRDGYYIQGNAAIIMFDVTSRMTYKNVP
QWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSITFHRKKSLQYYELSAK
SNYNFEKPFLWIARKLIGNPTVMFTEALALQPPEIVIPQDQVAQIEKEIA
DVSQVPLPDEEDNDM*
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spliced messenger RNA

>Gchil4199.t1 ID=Gchil4199.t1|Name=Gchil4199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00004373_pilon:1361421..1362274+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAACAGAATATCCCCACCTTCAAGGTTGTGCTTGTCGGAGATGG
AGGCGTCGGGAAGACAACGTTTGTCAAGAGACATATCACCGGTGAATTTG
AGAAGCGCTACATTGCCACCATGGGTGTCGAAGTACATCCACTCAAGTTC
TCAACAAATTTTGGCCCCATTCTTATGAACGTGTGGGATACTGCCGGACA
AGAGAAGCTTGGTGGTCTTCGCGATGGTTATTACATTCAGGGAAATGCAG
CAATCATTATGTTCGATGTCACTTCGCGCATGACATACAAGAATGTTCCA
CAATGGCATCGCGATCTCGTACGAGTGTGCGAGAACATCCCGATTGTCTT
GTGCGGCAACAAAGTCGACATCAAGGATCGGAAGGTCAAAGCAAAGAGCA
TTACATTCCATCGGAAAAAGTCTCTTCAGTACTATGAACTCAGTGCGAAG
AGCAACTACAATTTCGAAAAGCCCTTCCTATGGATTGCCCGGAAGCTTAT
CGGAAACCCAACTGTCATGTTCACCGAGGCTCTTGCACTTCAACCGCCTG
AGATTGTAATTCCTCAAGACCAGGTAGCTCAGATCGAAAAGGAAATCGCC
GACGTCAGCCAAGTTCCTCTGCCCGACGAAGAAGACAATGACATGTAA
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protein sequence of Gchil4199.t1

>Gchil4199.t1 ID=Gchil4199.t1|Name=Gchil4199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=216bp
MAQQNIPTFKVVLVGDGGVGKTTFVKRHITGEFEKRYIATMGVEVHPLKF
STNFGPILMNVWDTAGQEKLGGLRDGYYIQGNAAIIMFDVTSRMTYKNVP
QWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSITFHRKKSLQYYELSAK
SNYNFEKPFLWIARKLIGNPTVMFTEALALQPPEIVIPQDQVAQIEKEIA
DVSQVPLPDEEDNDM*
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mRNA from alignment at tig00004373_pilon:1361421..1362274+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4199.t1 ID=Gchil4199.t1|Name=Gchil4199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=854bp|location=Sequence derived from alignment at tig00004373_pilon:1361421..1362274+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCAACAGAATATCCCCACCTTCAAGGTTGTGCTTGTCGGAGATGG
AGGCGTCGGGAAGACAACGTTTGTCAAGAGACATATCACCGGTGAATTTG
AGAAGCGCTACATTGCCACCATGGGTGTCGAAGTACATCCACTCAAGTTC
TCAACAAATTTTGGCCCCATTCTTATGAACGTGTGGGATACTGCCGGACA
AGAGAAGCTTGGTGGTCTTCGCGATGGTTATTAGTAAGTCGTCATCTCAC
ATTTTGTTCTTTACCACCGCTTGCACATGAAGATCATAGAGCTTCTGCTC
ATCCGCTATACGAGTCACGTCGTTGCGCGTTCCATAACTCCCTATTCATT
CTGAAGTGCAGCTCGCGTGTTTTCTTCAAGTAACCCTTGTCAGAACGCTA
ACCTCATTGTACTCATGTGTCTCTCCTTCCGTATCTCAGCATTCAGGGAA
ATGCAGCAATCATTATGTTCGATGTCACTTCGCGCATGACATACAAGAAT
GTTCCACAATGGCATCGCGATCTCGTACGAGTGTGCGAGAACATCCCGAT
TGTCTTGTGCGGCAACAAAGTCGACATCAAGGATCGGAAGGTCAAAGCAA
AGAGCATTACATTCCATCGGAAAAAGTCTCTTCAGTACTATGAACTCAGT
GCGAAGAGCAACTACAATTTCGAAAAGCCCTTCCTATGGATTGCCCGGAA
GCTTATCGGAAACCCAACTGTCATGTTCACCGAGGCTCTTGCACTTCAAC
CGCCTGAGATTGTAATTCCTCAAGACCAGGTAGCTCAGATCGAAAAGGAA
ATCGCCGACGTCAGCCAAGTTCCTCTGCCCGACGAAGAAGACAATGACAT
GTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1361421..1362274+

>Gchil4199.t1 ID=Gchil4199.t1|Name=Gchil4199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00004373_pilon:1361421..1362274+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCAACAGAATATCCCCACCTTCAAGGTTGTGCTTGTCGGAGATGG
AGGCGTCGGGAAGACAACGTTTGTCAAGAGACATATCACCGGTGAATTTG
AGAAGCGCTACATTGCCACCATGGGTGTCGAAGTACATCCACTCAAGTTC
TCAACAAATTTTGGCCCCATTCTTATGAACGTGTGGGATACTGCCGGACA
AGAGAAGCTTGGTGGTCTTCGCGATGGTTATTACATTCAGGGAAATGCAG
CAATCATTATGTTCGATGTCACTTCGCGCATGACATACAAGAATGTTCCA
CAATGGCATCGCGATCTCGTACGAGTGTGCGAGAACATCCCGATTGTCTT
GTGCGGCAACAAAGTCGACATCAAGGATCGGAAGGTCAAAGCAAAGAGCA
TTACATTCCATCGGAAAAAGTCTCTTCAGTACTATGAACTCAGTGCGAAG
AGCAACTACAATTTCGAAAAGCCCTTCCTATGGATTGCCCGGAAGCTTAT
CGGAAACCCAACTGTCATGTTCACCGAGGCTCTTGCACTTCAACCGCCTG
AGATTGTAATTCCTCAAGACCAGGTAGCTCAGATCGAAAAGGAAATCGCC
GACGTCAGCCAAGTTCCTCTGCCCGACGAAGAAGACAATGACATGTAA
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