Gchil4194.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4194.t1
Unique NameGchil4194.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1348896..1350233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4897.EEB07025
Preferred nameALG1
PFAMsGlyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
Max annot lvl4751|Fungi
KEGG koko:K03842
KEGG ReactionR05972
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0019187,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue1.84e-50
EggNOG OGsCOG0438@1|root,KOG2941@2759|Eukaryota,38CDI@33154|Opisthokonta,3NTXV@4751|Fungi,3QKMK@4890|Ascomycota,3MBSN@451866|Taphrinomycotina
EC2.4.1.142
DescriptionMannosyltransferase complex subunit Alg1
COG categoryO
CAZyGT33
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4194Gchil4194Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1348896..1350233 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4194.t1.start1Gchil4194.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1348896..1348898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4194.t1.CDS1Gchil4194.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1348896..1350233 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4194.t1.exon1Gchil4194.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1348896..1350233 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4194.t1.stop1Gchil4194.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1350231..1350233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4194.t1Gchil4194.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1348896..1350233 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4194.t1 ID=Gchil4194.t1|Name=Gchil4194.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=446bp
MLLSILTTLAAVFAFLLLFSLLALLFIRYYHQHRFQTNPLPSAILLVSQS
PANHSPRVLAHLKACLHFTEQDAVIFLAEPPNTISDERVLFHSLPQYPPL
HKRNAFLLLKKAIYLLFGQISCLGTIACLPFDAHHIILATPPALPLLPLL
ILLRPFFFPHSKVIVDIHNLAYTLSAQHNTNRYFLKLARALELRSFRFAH
DTWTVSSALARFLYAMGTRAKVLRDLPSDVFTKFQNEPLSDDEKSSLIER
VRGQATCFGPPSHATKVPLIVSSTSWTPDEDLSILRESILQLDRSKATIR
VVITGKGPLRTAFEQDLALRKLQHVQVWLAWLPFSDYAALLSIAALGVSL
HASSSALDLPMKAVDMLGTGLPVVALRYPCIHELVHDGRNGVLFDGSEDL
TTTIQNLLRDEQLLQHLRAGATHSFEENWLTQWETVAIPSFSRGA*
back to top

spliced messenger RNA

>Gchil4194.t1 ID=Gchil4194.t1|Name=Gchil4194.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00004373_pilon:1348896..1350233+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTGTCCATTCTGACCACGCTAGCGGCAGTGTTCGCGTTCTTGCT
TCTTTTTAGTCTACTAGCGCTTCTCTTTATCCGATATTATCATCAGCATC
GCTTCCAAACGAATCCTCTACCATCGGCCATATTGCTTGTTTCGCAATCC
CCAGCCAATCACTCTCCGCGCGTCCTCGCTCACCTCAAAGCGTGCTTACA
CTTCACAGAACAGGATGCCGTAATCTTCCTCGCAGAACCTCCAAATACAA
TATCGGATGAGCGAGTTCTTTTCCATTCCTTACCGCAATATCCTCCACTT
CACAAACGGAATGCTTTCCTTTTGCTCAAGAAAGCAATTTACTTACTTTT
CGGTCAGATTTCTTGTTTGGGCACTATAGCATGTCTTCCTTTCGATGCCC
ATCACATTATTTTGGCGACCCCTCCAGCTCTCCCTCTTTTGCCCCTTCTT
ATTCTCTTGCGCCCTTTCTTTTTTCCGCACTCTAAAGTCATTGTTGATAT
TCACAATCTCGCATATACGCTTTCCGCACAACACAATACTAATCGTTACT
TTCTCAAGCTTGCACGAGCACTCGAATTGCGTTCCTTCCGCTTTGCACAT
GATACATGGACAGTTTCGTCAGCACTGGCACGGTTTTTGTATGCTATGGG
CACAAGAGCAAAAGTGCTTCGAGATCTCCCCTCGGACGTCTTCACCAAGT
TTCAGAACGAACCGCTTTCAGACGATGAGAAAAGCAGCCTTATAGAGCGC
GTCCGAGGCCAAGCTACGTGTTTCGGGCCACCATCACATGCCACCAAGGT
GCCTTTGATAGTATCCAGCACGAGTTGGACTCCTGATGAAGATTTGTCTA
TTCTGCGCGAGTCCATCCTCCAGCTCGATCGGAGCAAGGCGACTATTCGC
GTCGTGATAACAGGAAAGGGCCCGTTGCGAACTGCTTTCGAACAAGACCT
AGCGCTTCGAAAGCTTCAACATGTTCAAGTATGGCTCGCATGGTTACCAT
TCTCTGACTATGCTGCACTACTTTCAATAGCAGCTCTCGGTGTCTCGTTA
CATGCCAGTTCTTCCGCCTTGGATCTACCAATGAAGGCTGTAGATATGTT
GGGAACTGGGCTTCCTGTAGTAGCGTTGAGGTACCCTTGCATTCACGAAT
TAGTTCACGATGGACGCAATGGAGTTCTGTTCGATGGTTCTGAGGATCTA
ACAACAACCATTCAAAACCTATTACGCGATGAGCAGCTCCTGCAGCATTT
GCGAGCAGGTGCGACACACTCTTTCGAGGAAAATTGGCTAACGCAGTGGG
AGACCGTTGCGATACCGTCTTTTTCGCGCGGCGCATGA
back to top

protein sequence of Gchil4194.t1

>Gchil4194.t1 ID=Gchil4194.t1|Name=Gchil4194.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=446bp
MLLSILTTLAAVFAFLLLFSLLALLFIRYYHQHRFQTNPLPSAILLVSQS
PANHSPRVLAHLKACLHFTEQDAVIFLAEPPNTISDERVLFHSLPQYPPL
HKRNAFLLLKKAIYLLFGQISCLGTIACLPFDAHHIILATPPALPLLPLL
ILLRPFFFPHSKVIVDIHNLAYTLSAQHNTNRYFLKLARALELRSFRFAH
DTWTVSSALARFLYAMGTRAKVLRDLPSDVFTKFQNEPLSDDEKSSLIER
VRGQATCFGPPSHATKVPLIVSSTSWTPDEDLSILRESILQLDRSKATIR
VVITGKGPLRTAFEQDLALRKLQHVQVWLAWLPFSDYAALLSIAALGVSL
HASSSALDLPMKAVDMLGTGLPVVALRYPCIHELVHDGRNGVLFDGSEDL
TTTIQNLLRDEQLLQHLRAGATHSFEENWLTQWETVAIPSFSRGA*
back to top

mRNA from alignment at tig00004373_pilon:1348896..1350233+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4194.t1 ID=Gchil4194.t1|Name=Gchil4194.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00004373_pilon:1348896..1350233+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTTGTCCATTCTGACCACGCTAGCGGCAGTGTTCGCGTTCTTGCT
TCTTTTTAGTCTACTAGCGCTTCTCTTTATCCGATATTATCATCAGCATC
GCTTCCAAACGAATCCTCTACCATCGGCCATATTGCTTGTTTCGCAATCC
CCAGCCAATCACTCTCCGCGCGTCCTCGCTCACCTCAAAGCGTGCTTACA
CTTCACAGAACAGGATGCCGTAATCTTCCTCGCAGAACCTCCAAATACAA
TATCGGATGAGCGAGTTCTTTTCCATTCCTTACCGCAATATCCTCCACTT
CACAAACGGAATGCTTTCCTTTTGCTCAAGAAAGCAATTTACTTACTTTT
CGGTCAGATTTCTTGTTTGGGCACTATAGCATGTCTTCCTTTCGATGCCC
ATCACATTATTTTGGCGACCCCTCCAGCTCTCCCTCTTTTGCCCCTTCTT
ATTCTCTTGCGCCCTTTCTTTTTTCCGCACTCTAAAGTCATTGTTGATAT
TCACAATCTCGCATATACGCTTTCCGCACAACACAATACTAATCGTTACT
TTCTCAAGCTTGCACGAGCACTCGAATTGCGTTCCTTCCGCTTTGCACAT
GATACATGGACAGTTTCGTCAGCACTGGCACGGTTTTTGTATGCTATGGG
CACAAGAGCAAAAGTGCTTCGAGATCTCCCCTCGGACGTCTTCACCAAGT
TTCAGAACGAACCGCTTTCAGACGATGAGAAAAGCAGCCTTATAGAGCGC
GTCCGAGGCCAAGCTACGTGTTTCGGGCCACCATCACATGCCACCAAGGT
GCCTTTGATAGTATCCAGCACGAGTTGGACTCCTGATGAAGATTTGTCTA
TTCTGCGCGAGTCCATCCTCCAGCTCGATCGGAGCAAGGCGACTATTCGC
GTCGTGATAACAGGAAAGGGCCCGTTGCGAACTGCTTTCGAACAAGACCT
AGCGCTTCGAAAGCTTCAACATGTTCAAGTATGGCTCGCATGGTTACCAT
TCTCTGACTATGCTGCACTACTTTCAATAGCAGCTCTCGGTGTCTCGTTA
CATGCCAGTTCTTCCGCCTTGGATCTACCAATGAAGGCTGTAGATATGTT
GGGAACTGGGCTTCCTGTAGTAGCGTTGAGGTACCCTTGCATTCACGAAT
TAGTTCACGATGGACGCAATGGAGTTCTGTTCGATGGTTCTGAGGATCTA
ACAACAACCATTCAAAACCTATTACGCGATGAGCAGCTCCTGCAGCATTT
GCGAGCAGGTGCGACACACTCTTTCGAGGAAAATTGGCTAACGCAGTGGG
AGACCGTTGCGATACCGTCTTTTTCGCGCGGCGCATGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:1348896..1350233+

>Gchil4194.t1 ID=Gchil4194.t1|Name=Gchil4194.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1338bp|location=Sequence derived from alignment at tig00004373_pilon:1348896..1350233+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTTGTCCATTCTGACCACGCTAGCGGCAGTGTTCGCGTTCTTGCT
TCTTTTTAGTCTACTAGCGCTTCTCTTTATCCGATATTATCATCAGCATC
GCTTCCAAACGAATCCTCTACCATCGGCCATATTGCTTGTTTCGCAATCC
CCAGCCAATCACTCTCCGCGCGTCCTCGCTCACCTCAAAGCGTGCTTACA
CTTCACAGAACAGGATGCCGTAATCTTCCTCGCAGAACCTCCAAATACAA
TATCGGATGAGCGAGTTCTTTTCCATTCCTTACCGCAATATCCTCCACTT
CACAAACGGAATGCTTTCCTTTTGCTCAAGAAAGCAATTTACTTACTTTT
CGGTCAGATTTCTTGTTTGGGCACTATAGCATGTCTTCCTTTCGATGCCC
ATCACATTATTTTGGCGACCCCTCCAGCTCTCCCTCTTTTGCCCCTTCTT
ATTCTCTTGCGCCCTTTCTTTTTTCCGCACTCTAAAGTCATTGTTGATAT
TCACAATCTCGCATATACGCTTTCCGCACAACACAATACTAATCGTTACT
TTCTCAAGCTTGCACGAGCACTCGAATTGCGTTCCTTCCGCTTTGCACAT
GATACATGGACAGTTTCGTCAGCACTGGCACGGTTTTTGTATGCTATGGG
CACAAGAGCAAAAGTGCTTCGAGATCTCCCCTCGGACGTCTTCACCAAGT
TTCAGAACGAACCGCTTTCAGACGATGAGAAAAGCAGCCTTATAGAGCGC
GTCCGAGGCCAAGCTACGTGTTTCGGGCCACCATCACATGCCACCAAGGT
GCCTTTGATAGTATCCAGCACGAGTTGGACTCCTGATGAAGATTTGTCTA
TTCTGCGCGAGTCCATCCTCCAGCTCGATCGGAGCAAGGCGACTATTCGC
GTCGTGATAACAGGAAAGGGCCCGTTGCGAACTGCTTTCGAACAAGACCT
AGCGCTTCGAAAGCTTCAACATGTTCAAGTATGGCTCGCATGGTTACCAT
TCTCTGACTATGCTGCACTACTTTCAATAGCAGCTCTCGGTGTCTCGTTA
CATGCCAGTTCTTCCGCCTTGGATCTACCAATGAAGGCTGTAGATATGTT
GGGAACTGGGCTTCCTGTAGTAGCGTTGAGGTACCCTTGCATTCACGAAT
TAGTTCACGATGGACGCAATGGAGTTCTGTTCGATGGTTCTGAGGATCTA
ACAACAACCATTCAAAACCTATTACGCGATGAGCAGCTCCTGCAGCATTT
GCGAGCAGGTGCGACACACTCTTTCGAGGAAAATTGGCTAACGCAGTGGG
AGACCGTTGCGATACCGTCTTTTTCGCGCGGCGCATGA
back to top