Gchil4192.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4192.t1
Unique Name	Gchil4192.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1343669..1345363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.8e-18
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4192	Gchil4192	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1343669..1345363 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4192.t1.start1	Gchil4192.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1343669..1343671 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4192.t1.CDS1	Gchil4192.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1343669..1345363 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4192.t1.exon1	Gchil4192.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1343669..1345363 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4192.t1.stop1	Gchil4192.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1345361..1345363 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4192.t1	Gchil4192.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1343669..1345363 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1343669..1345363+
coding sequence from alignment at tig00004373_pilon:1343669..1345363+

mRNA sequence

>Gchil4192.t1 ID=Gchil4192.t1|Name=Gchil4192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=565bp
MSAAMRRLRHRATYIARAAATKRILPPNVALRRQLLHALFIISLALLLWN
SLSNRIFGLQTDFQSDQQSPLRDVDLAISDWRAQYSQLSNFPNTSFTDDV
ANFHTLITTCRIPPVFVSRLGVEGRRKLLIRLSAPSETIPSFENMPKLTI
VDVRNGLGNRLRALASAMEFSYLTHRVLVVVWAADAHLNASIHHLFDQSV
LHNLVLIQTPISWPIDPHNVHLTSTASLIPASDTEHTYQSSVSYFNFMAR
DSNSKQSPLTQISDSHDKHIYVRTAYVLRSEHAPGTLINAFFQALTPAPQ
VRQLVDDMQRVAGGEQALHTMIGVHIRSRTLAQDNDKIDHLCEYSILGAE
TTNDWRLRSSPNNFIHEMKRVRRMWPQIVERSQLLSSRRRDIGRGNAKFL
VNIRRAPRFFAAVDTTSALNELYQHFTRDHIITLHRNCDDRDAECVQYAF
ADMILLSRTGAMLASGWSSFSEAAQRLRVRPADMVPWSNEGYVIRTSGID
FGWTWREKLRTKVLRWIWGKRGDQKSLNSEKERELMCKQRRLERHWQNSA
ATVGIGSARQPKLP*

spliced messenger RNA

>Gchil4192.t1 ID=Gchil4192.t1|Name=Gchil4192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00004373_pilon:1343669..1345363+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGGCGATGAGACGCTTGCGCCATAGAGCCACGTACATTGCGCG
AGCTGCCGCCACCAAGAGGATTTTGCCCCCCAATGTCGCTCTCAGACGCC
AGCTTCTGCATGCGCTTTTCATTATCTCTCTGGCGCTTCTTCTATGGAAC
TCCCTCAGCAATAGAATCTTTGGCTTACAGACTGACTTCCAGTCAGACCA
GCAGAGCCCGTTGAGAGATGTAGACTTAGCTATCTCCGATTGGCGAGCAC
AATATTCACAACTTAGCAATTTTCCCAATACTTCCTTCACAGATGATGTT
GCCAACTTTCACACCCTCATCACCACATGTCGAATTCCGCCTGTTTTTGT
ATCTCGACTTGGAGTGGAAGGCCGCCGCAAACTGCTTATACGTCTCTCTG
CCCCTTCAGAAACAATCCCTTCTTTTGAAAACATGCCTAAACTCACCATT
GTCGACGTTCGAAATGGACTCGGAAATAGATTGCGTGCGCTAGCCTCCGC
CATGGAATTTTCGTACCTTACCCACAGAGTGCTTGTCGTCGTATGGGCCG
CTGACGCTCATCTCAATGCATCCATTCATCATCTGTTCGATCAATCCGTG
TTGCACAATCTTGTTCTAATACAAACACCAATATCGTGGCCTATTGATCC
GCACAATGTCCATCTAACCTCAACTGCTTCGTTAATACCCGCAAGCGATA
CTGAACACACTTACCAATCCTCCGTATCCTACTTCAATTTTATGGCCAGA
GACTCTAACTCAAAACAATCGCCACTAACACAGATTTCTGACTCACACGA
CAAGCATATATACGTCCGCACCGCCTACGTTCTTCGGTCTGAACATGCCC
CGGGCACTCTAATCAATGCATTCTTCCAAGCACTCACCCCCGCTCCCCAA
GTTCGTCAACTCGTTGACGACATGCAACGAGTTGCAGGTGGAGAACAAGC
ATTGCATACCATGATCGGAGTTCACATCCGATCAAGAACCTTAGCACAAG
ACAATGATAAGATTGACCATCTATGTGAATATTCCATCCTCGGCGCGGAA
ACTACCAACGATTGGCGACTTCGAAGCTCCCCAAACAACTTCATCCATGA
AATGAAGCGAGTTCGCAGAATGTGGCCTCAGATTGTAGAGCGATCTCAAC
TGCTTTCTTCGAGGAGGCGTGACATTGGGCGTGGAAACGCCAAGTTTCTG
GTCAATATCCGTCGTGCACCAAGATTTTTCGCTGCAGTTGACACGACGTC
TGCGCTCAATGAGCTGTACCAACATTTTACACGCGACCATATCATCACCC
TGCACCGCAACTGTGACGATCGTGATGCTGAATGTGTTCAGTATGCCTTT
GCTGATATGATCTTGTTATCAAGAACAGGAGCCATGTTGGCATCTGGGTG
GAGCTCATTCTCGGAAGCCGCGCAACGTTTAAGAGTGCGTCCAGCGGATA
TGGTTCCGTGGAGCAATGAGGGATACGTCATACGCACCTCAGGTATCGAT
TTCGGATGGACATGGCGGGAGAAGCTGCGGACTAAGGTCTTGCGGTGGAT
TTGGGGGAAGCGAGGAGACCAGAAAAGTCTCAACTCCGAGAAAGAAAGAG
AACTGATGTGCAAACAAAGACGTTTGGAGCGGCATTGGCAAAACAGTGCT
GCTACCGTTGGTATAGGTAGCGCGAGACAGCCGAAGCTGCCATGA

protein sequence of Gchil4192.t1

>Gchil4192.t1 ID=Gchil4192.t1|Name=Gchil4192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=565bp
MSAAMRRLRHRATYIARAAATKRILPPNVALRRQLLHALFIISLALLLWN
SLSNRIFGLQTDFQSDQQSPLRDVDLAISDWRAQYSQLSNFPNTSFTDDV
ANFHTLITTCRIPPVFVSRLGVEGRRKLLIRLSAPSETIPSFENMPKLTI
VDVRNGLGNRLRALASAMEFSYLTHRVLVVVWAADAHLNASIHHLFDQSV
LHNLVLIQTPISWPIDPHNVHLTSTASLIPASDTEHTYQSSVSYFNFMAR
DSNSKQSPLTQISDSHDKHIYVRTAYVLRSEHAPGTLINAFFQALTPAPQ
VRQLVDDMQRVAGGEQALHTMIGVHIRSRTLAQDNDKIDHLCEYSILGAE
TTNDWRLRSSPNNFIHEMKRVRRMWPQIVERSQLLSSRRRDIGRGNAKFL
VNIRRAPRFFAAVDTTSALNELYQHFTRDHIITLHRNCDDRDAECVQYAF
ADMILLSRTGAMLASGWSSFSEAAQRLRVRPADMVPWSNEGYVIRTSGID
FGWTWREKLRTKVLRWIWGKRGDQKSLNSEKERELMCKQRRLERHWQNSA
ATVGIGSARQPKLP*

mRNA from alignment at tig00004373_pilon:1343669..1345363+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4192.t1 ID=Gchil4192.t1|Name=Gchil4192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00004373_pilon:1343669..1345363+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCGGCGATGAGACGCTTGCGCCATAGAGCCACGTACATTGCGCG
AGCTGCCGCCACCAAGAGGATTTTGCCCCCCAATGTCGCTCTCAGACGCC
AGCTTCTGCATGCGCTTTTCATTATCTCTCTGGCGCTTCTTCTATGGAAC
TCCCTCAGCAATAGAATCTTTGGCTTACAGACTGACTTCCAGTCAGACCA
GCAGAGCCCGTTGAGAGATGTAGACTTAGCTATCTCCGATTGGCGAGCAC
AATATTCACAACTTAGCAATTTTCCCAATACTTCCTTCACAGATGATGTT
GCCAACTTTCACACCCTCATCACCACATGTCGAATTCCGCCTGTTTTTGT
ATCTCGACTTGGAGTGGAAGGCCGCCGCAAACTGCTTATACGTCTCTCTG
CCCCTTCAGAAACAATCCCTTCTTTTGAAAACATGCCTAAACTCACCATT
GTCGACGTTCGAAATGGACTCGGAAATAGATTGCGTGCGCTAGCCTCCGC
CATGGAATTTTCGTACCTTACCCACAGAGTGCTTGTCGTCGTATGGGCCG
CTGACGCTCATCTCAATGCATCCATTCATCATCTGTTCGATCAATCCGTG
TTGCACAATCTTGTTCTAATACAAACACCAATATCGTGGCCTATTGATCC
GCACAATGTCCATCTAACCTCAACTGCTTCGTTAATACCCGCAAGCGATA
CTGAACACACTTACCAATCCTCCGTATCCTACTTCAATTTTATGGCCAGA
GACTCTAACTCAAAACAATCGCCACTAACACAGATTTCTGACTCACACGA
CAAGCATATATACGTCCGCACCGCCTACGTTCTTCGGTCTGAACATGCCC
CGGGCACTCTAATCAATGCATTCTTCCAAGCACTCACCCCCGCTCCCCAA
GTTCGTCAACTCGTTGACGACATGCAACGAGTTGCAGGTGGAGAACAAGC
ATTGCATACCATGATCGGAGTTCACATCCGATCAAGAACCTTAGCACAAG
ACAATGATAAGATTGACCATCTATGTGAATATTCCATCCTCGGCGCGGAA
ACTACCAACGATTGGCGACTTCGAAGCTCCCCAAACAACTTCATCCATGA
AATGAAGCGAGTTCGCAGAATGTGGCCTCAGATTGTAGAGCGATCTCAAC
TGCTTTCTTCGAGGAGGCGTGACATTGGGCGTGGAAACGCCAAGTTTCTG
GTCAATATCCGTCGTGCACCAAGATTTTTCGCTGCAGTTGACACGACGTC
TGCGCTCAATGAGCTGTACCAACATTTTACACGCGACCATATCATCACCC
TGCACCGCAACTGTGACGATCGTGATGCTGAATGTGTTCAGTATGCCTTT
GCTGATATGATCTTGTTATCAAGAACAGGAGCCATGTTGGCATCTGGGTG
GAGCTCATTCTCGGAAGCCGCGCAACGTTTAAGAGTGCGTCCAGCGGATA
TGGTTCCGTGGAGCAATGAGGGATACGTCATACGCACCTCAGGTATCGAT
TTCGGATGGACATGGCGGGAGAAGCTGCGGACTAAGGTCTTGCGGTGGAT
TTGGGGGAAGCGAGGAGACCAGAAAAGTCTCAACTCCGAGAAAGAAAGAG
AACTGATGTGCAAACAAAGACGTTTGGAGCGGCATTGGCAAAACAGTGCT
GCTACCGTTGGTATAGGTAGCGCGAGACAGCCGAAGCTGCCATGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1343669..1345363+

>Gchil4192.t1 ID=Gchil4192.t1|Name=Gchil4192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00004373_pilon:1343669..1345363+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCGGCGATGAGACGCTTGCGCCATAGAGCCACGTACATTGCGCG
AGCTGCCGCCACCAAGAGGATTTTGCCCCCCAATGTCGCTCTCAGACGCC
AGCTTCTGCATGCGCTTTTCATTATCTCTCTGGCGCTTCTTCTATGGAAC
TCCCTCAGCAATAGAATCTTTGGCTTACAGACTGACTTCCAGTCAGACCA
GCAGAGCCCGTTGAGAGATGTAGACTTAGCTATCTCCGATTGGCGAGCAC
AATATTCACAACTTAGCAATTTTCCCAATACTTCCTTCACAGATGATGTT
GCCAACTTTCACACCCTCATCACCACATGTCGAATTCCGCCTGTTTTTGT
ATCTCGACTTGGAGTGGAAGGCCGCCGCAAACTGCTTATACGTCTCTCTG
CCCCTTCAGAAACAATCCCTTCTTTTGAAAACATGCCTAAACTCACCATT
GTCGACGTTCGAAATGGACTCGGAAATAGATTGCGTGCGCTAGCCTCCGC
CATGGAATTTTCGTACCTTACCCACAGAGTGCTTGTCGTCGTATGGGCCG
CTGACGCTCATCTCAATGCATCCATTCATCATCTGTTCGATCAATCCGTG
TTGCACAATCTTGTTCTAATACAAACACCAATATCGTGGCCTATTGATCC
GCACAATGTCCATCTAACCTCAACTGCTTCGTTAATACCCGCAAGCGATA
CTGAACACACTTACCAATCCTCCGTATCCTACTTCAATTTTATGGCCAGA
GACTCTAACTCAAAACAATCGCCACTAACACAGATTTCTGACTCACACGA
CAAGCATATATACGTCCGCACCGCCTACGTTCTTCGGTCTGAACATGCCC
CGGGCACTCTAATCAATGCATTCTTCCAAGCACTCACCCCCGCTCCCCAA
GTTCGTCAACTCGTTGACGACATGCAACGAGTTGCAGGTGGAGAACAAGC
ATTGCATACCATGATCGGAGTTCACATCCGATCAAGAACCTTAGCACAAG
ACAATGATAAGATTGACCATCTATGTGAATATTCCATCCTCGGCGCGGAA
ACTACCAACGATTGGCGACTTCGAAGCTCCCCAAACAACTTCATCCATGA
AATGAAGCGAGTTCGCAGAATGTGGCCTCAGATTGTAGAGCGATCTCAAC
TGCTTTCTTCGAGGAGGCGTGACATTGGGCGTGGAAACGCCAAGTTTCTG
GTCAATATCCGTCGTGCACCAAGATTTTTCGCTGCAGTTGACACGACGTC
TGCGCTCAATGAGCTGTACCAACATTTTACACGCGACCATATCATCACCC
TGCACCGCAACTGTGACGATCGTGATGCTGAATGTGTTCAGTATGCCTTT
GCTGATATGATCTTGTTATCAAGAACAGGAGCCATGTTGGCATCTGGGTG
GAGCTCATTCTCGGAAGCCGCGCAACGTTTAAGAGTGCGTCCAGCGGATA
TGGTTCCGTGGAGCAATGAGGGATACGTCATACGCACCTCAGGTATCGAT
TTCGGATGGACATGGCGGGAGAAGCTGCGGACTAAGGTCTTGCGGTGGAT
TTGGGGGAAGCGAGGAGACCAGAAAAGTCTCAACTCCGAGAAAGAAAGAG
AACTGATGTGCAAACAAAGACGTTTGGAGCGGCATTGGCAAAACAGTGCT
GCTACCGTTGGTATAGGTAGCGCGAGACAGCCGAAGCTGCCATGA