Gchil4190.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4190.t1
Unique NameGchil4190.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1305319..1305999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX68856
PFAMsCENP-B_N,DDE_1,HTH_Tnp_Tc5
Max annot lvl33208|Metazoa
Evalue7.13e-05
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
DescriptionJerky protein homolog-like
COG categoryBD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4190Gchil4190Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1305319..1305999 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4190.t1.start1Gchil4190.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1305319..1305321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4190.t1.CDS1Gchil4190.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1305319..1305999 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4190.t1.exon1Gchil4190.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1305319..1305999 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4190.t1.stop1Gchil4190.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1305997..1305999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4190.t1Gchil4190.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1305319..1305999 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4190.t1 ID=Gchil4190.t1|Name=Gchil4190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=227bp
MKAGTRGLSEGYEAHVLDAVEIIVKAWNNVSAKTISSCWIKSGVLPPILE
AQLSPEHGILSESIKVVRTVQEGDVMQLTDTFKEVCNAKLRFQDMVDENL
GEISVAQIQKWTTLEESEDVREALAHDSLMIMTEEMQDEVVQSLKPAEIE
SQMNSNNVKDAEAASLPVPSIASIAQMFSDVEALASRTGVCSASYHLRKA
KQAFINARREQDLKSSRQILVADVLR*
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spliced messenger RNA

>Gchil4190.t1 ID=Gchil4190.t1|Name=Gchil4190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00004373_pilon:1305319..1305999+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCTGGCACTAGAGGACTTTCAGAAGGGTACGAGGCTCATGTTCT
GGACGCTGTAGAGATAATCGTGAAAGCCTGGAACAATGTCTCTGCGAAAA
CCATCTCAAGTTGTTGGATCAAATCAGGCGTATTACCACCGATCCTGGAG
GCCCAATTGTCGCCAGAACACGGTATACTTTCAGAAAGTATCAAAGTTGT
ACGCACTGTTCAGGAAGGGGATGTGATGCAGTTAACGGACACGTTCAAAG
AAGTATGTAACGCAAAGTTACGTTTCCAAGACATGGTCGATGAAAACTTG
GGTGAAATAAGTGTTGCTCAAATCCAAAAGTGGACAACTCTTGAGGAGAG
CGAGGACGTTCGAGAGGCTTTAGCCCATGATTCATTGATGATTATGACAG
AAGAGATGCAAGATGAAGTCGTGCAATCGTTGAAACCCGCTGAAATCGAA
TCTCAAATGAACAGTAACAATGTAAAAGATGCTGAAGCGGCAAGCCTCCC
AGTTCCATCGATAGCAAGCATCGCACAGATGTTCTCTGACGTGGAAGCGT
TGGCGAGCCGAACAGGAGTATGTTCGGCTTCCTATCACCTTCGGAAAGCA
AAGCAAGCTTTTATAAATGCAAGGCGAGAACAGGATTTAAAAAGTAGTCG
GCAAATATTGGTTGCTGATGTGCTCAGGTAG
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protein sequence of Gchil4190.t1

>Gchil4190.t1 ID=Gchil4190.t1|Name=Gchil4190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=227bp
MKAGTRGLSEGYEAHVLDAVEIIVKAWNNVSAKTISSCWIKSGVLPPILE
AQLSPEHGILSESIKVVRTVQEGDVMQLTDTFKEVCNAKLRFQDMVDENL
GEISVAQIQKWTTLEESEDVREALAHDSLMIMTEEMQDEVVQSLKPAEIE
SQMNSNNVKDAEAASLPVPSIASIAQMFSDVEALASRTGVCSASYHLRKA
KQAFINARREQDLKSSRQILVADVLR*
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mRNA from alignment at tig00004373_pilon:1305319..1305999+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4190.t1 ID=Gchil4190.t1|Name=Gchil4190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00004373_pilon:1305319..1305999+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCTGGCACTAGAGGACTTTCAGAAGGGTACGAGGCTCATGTTCT
GGACGCTGTAGAGATAATCGTGAAAGCCTGGAACAATGTCTCTGCGAAAA
CCATCTCAAGTTGTTGGATCAAATCAGGCGTATTACCACCGATCCTGGAG
GCCCAATTGTCGCCAGAACACGGTATACTTTCAGAAAGTATCAAAGTTGT
ACGCACTGTTCAGGAAGGGGATGTGATGCAGTTAACGGACACGTTCAAAG
AAGTATGTAACGCAAAGTTACGTTTCCAAGACATGGTCGATGAAAACTTG
GGTGAAATAAGTGTTGCTCAAATCCAAAAGTGGACAACTCTTGAGGAGAG
CGAGGACGTTCGAGAGGCTTTAGCCCATGATTCATTGATGATTATGACAG
AAGAGATGCAAGATGAAGTCGTGCAATCGTTGAAACCCGCTGAAATCGAA
TCTCAAATGAACAGTAACAATGTAAAAGATGCTGAAGCGGCAAGCCTCCC
AGTTCCATCGATAGCAAGCATCGCACAGATGTTCTCTGACGTGGAAGCGT
TGGCGAGCCGAACAGGAGTATGTTCGGCTTCCTATCACCTTCGGAAAGCA
AAGCAAGCTTTTATAAATGCAAGGCGAGAACAGGATTTAAAAAGTAGTCG
GCAAATATTGGTTGCTGATGTGCTCAGGTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1305319..1305999+

>Gchil4190.t1 ID=Gchil4190.t1|Name=Gchil4190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00004373_pilon:1305319..1305999+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCTGGCACTAGAGGACTTTCAGAAGGGTACGAGGCTCATGTTCT
GGACGCTGTAGAGATAATCGTGAAAGCCTGGAACAATGTCTCTGCGAAAA
CCATCTCAAGTTGTTGGATCAAATCAGGCGTATTACCACCGATCCTGGAG
GCCCAATTGTCGCCAGAACACGGTATACTTTCAGAAAGTATCAAAGTTGT
ACGCACTGTTCAGGAAGGGGATGTGATGCAGTTAACGGACACGTTCAAAG
AAGTATGTAACGCAAAGTTACGTTTCCAAGACATGGTCGATGAAAACTTG
GGTGAAATAAGTGTTGCTCAAATCCAAAAGTGGACAACTCTTGAGGAGAG
CGAGGACGTTCGAGAGGCTTTAGCCCATGATTCATTGATGATTATGACAG
AAGAGATGCAAGATGAAGTCGTGCAATCGTTGAAACCCGCTGAAATCGAA
TCTCAAATGAACAGTAACAATGTAAAAGATGCTGAAGCGGCAAGCCTCCC
AGTTCCATCGATAGCAAGCATCGCACAGATGTTCTCTGACGTGGAAGCGT
TGGCGAGCCGAACAGGAGTATGTTCGGCTTCCTATCACCTTCGGAAAGCA
AAGCAAGCTTTTATAAATGCAAGGCGAGAACAGGATTTAAAAAGTAGTCG
GCAAATATTGGTTGCTGATGTGCTCAGGTAG
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