Gchil4187.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4187.t1
Unique NameGchil4187.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length470
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1296106..1297515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4187Gchil4187Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1296106..1297515 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4187.t1.stop1Gchil4187.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1296106..1296108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4187.t1.CDS1Gchil4187.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1296106..1297515 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4187.t1.exon1Gchil4187.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1296106..1297515 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4187.t1.start1Gchil4187.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1297513..1297515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4187.t1Gchil4187.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1296106..1297515 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4187.t1 ID=Gchil4187.t1|Name=Gchil4187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=470bp
MDDVTETSELPNSRDEAIDLLNAVRTAFSKNSDPEMFLARASDQIREMET
SIVETCAKNRIRTDENLYSLLETRDAISEQSTELKNAKQSAAEITISVNE
AHRELLEKVQIRKNLDSALAIASQTRRIVRMFARTEDIIDAQRLYTAFCM
LKMLEDDIKSIRKGTVIEELIPDTQKLRTKIMMQAHKATHNWLSMVRKFE
HALGEYALYHAGAQTVACNCFLETCRVSSGGDRHILPYLPPLAGPGGLGK
PWIPLLTARCIVPVPLSQRGPRGRSLKGPSLIRLPLLSASNGGSFPIESN
SEKRRSWKRFMQEYKGEVPSLYLRPLLQSIQVNKGMDLLTDMQGEYRRER
SDQLNRIFEVTNNSEEDPFAIATDAFPIIETLKSAMIEETVCKVCGFFVV
ERAVEKYADSTLVPRAVIDGEWWPWAFGRLNVLLAKMDKSSEDSSSEKNC
VRSMREIVSRFARANGLSG*
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spliced messenger RNA

>Gchil4187.t1 ID=Gchil4187.t1|Name=Gchil4187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00004373_pilon:1296106..1297515- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATGTTACTGAAACATCAGAACTGCCGAACTCCCGTGATGAAGC
CATTGATCTTCTCAACGCAGTGCGTACCGCGTTTTCAAAAAATTCGGACC
CGGAAATGTTCCTTGCCCGAGCCTCAGACCAGATTCGGGAAATGGAGACT
TCCATAGTAGAGACATGTGCCAAGAATCGAATTCGCACTGACGAAAACCT
CTACTCTTTGTTAGAGACCCGAGATGCAATTTCTGAGCAGTCTACTGAGC
TCAAGAATGCCAAACAGTCTGCTGCTGAGATTACCATTTCAGTGAACGAA
GCTCATCGAGAACTGCTTGAAAAGGTTCAAATCCGCAAAAATCTTGACTC
TGCATTGGCTATTGCATCACAGACAAGAAGAATTGTGAGAATGTTTGCAA
GAACAGAAGATATAATCGATGCGCAGCGGCTTTATACAGCATTTTGTATG
CTGAAAATGCTTGAAGATGATATCAAATCGATACGAAAAGGAACTGTCAT
CGAGGAACTTATACCTGATACTCAGAAATTAAGAACGAAGATTATGATGC
AAGCCCACAAAGCAACACACAACTGGCTTAGTATGGTGCGCAAGTTTGAA
CACGCTTTAGGTGAATATGCTTTGTATCATGCTGGTGCGCAGACTGTTGC
TTGTAATTGTTTTCTCGAGACATGCCGCGTTTCTTCGGGCGGTGACAGAC
ATATTCTTCCATACTTACCACCACTTGCAGGACCGGGGGGTCTTGGGAAG
CCATGGATCCCGCTTCTGACTGCTAGATGTATTGTCCCCGTTCCTTTGTC
TCAAAGAGGGCCACGGGGTAGGAGTTTAAAGGGGCCGAGCTTGATTCGGT
TGCCATTGTTATCGGCTTCAAATGGAGGCTCATTTCCAATCGAAAGCAAC
AGCGAGAAGCGTAGGAGTTGGAAAAGGTTCATGCAAGAGTACAAAGGAGA
AGTACCATCGCTCTATCTACGCCCATTGTTACAAAGCATTCAGGTAAACA
AGGGGATGGATTTGCTTACAGACATGCAAGGTGAGTACCGACGAGAACGC
TCAGACCAATTAAACAGGATCTTCGAAGTTACCAACAACAGTGAAGAAGA
CCCGTTTGCGATAGCCACAGATGCGTTTCCGATTATTGAGACTCTGAAAA
GCGCCATGATCGAAGAAACCGTATGCAAAGTATGTGGCTTCTTTGTTGTT
GAAAGGGCCGTAGAAAAATATGCTGATTCGACATTGGTTCCACGCGCTGT
TATAGACGGGGAGTGGTGGCCATGGGCCTTTGGGCGCCTGAATGTTTTAC
TCGCTAAAATGGATAAGAGTTCAGAGGATAGCTCTTCAGAAAAGAACTGT
GTGCGAAGTATGCGGGAGATTGTATCTCGATTTGCAAGGGCCAACGGGTT
GTCAGGGTGA
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protein sequence of Gchil4187.t1

>Gchil4187.t1 ID=Gchil4187.t1|Name=Gchil4187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=470bp
MDDVTETSELPNSRDEAIDLLNAVRTAFSKNSDPEMFLARASDQIREMET
SIVETCAKNRIRTDENLYSLLETRDAISEQSTELKNAKQSAAEITISVNE
AHRELLEKVQIRKNLDSALAIASQTRRIVRMFARTEDIIDAQRLYTAFCM
LKMLEDDIKSIRKGTVIEELIPDTQKLRTKIMMQAHKATHNWLSMVRKFE
HALGEYALYHAGAQTVACNCFLETCRVSSGGDRHILPYLPPLAGPGGLGK
PWIPLLTARCIVPVPLSQRGPRGRSLKGPSLIRLPLLSASNGGSFPIESN
SEKRRSWKRFMQEYKGEVPSLYLRPLLQSIQVNKGMDLLTDMQGEYRRER
SDQLNRIFEVTNNSEEDPFAIATDAFPIIETLKSAMIEETVCKVCGFFVV
ERAVEKYADSTLVPRAVIDGEWWPWAFGRLNVLLAKMDKSSEDSSSEKNC
VRSMREIVSRFARANGLSG*
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mRNA from alignment at tig00004373_pilon:1296106..1297515-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4187.t1 ID=Gchil4187.t1|Name=Gchil4187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00004373_pilon:1296106..1297515- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGATGTTACTGAAACATCAGAACTGCCGAACTCCCGTGATGAAGC
CATTGATCTTCTCAACGCAGTGCGTACCGCGTTTTCAAAAAATTCGGACC
CGGAAATGTTCCTTGCCCGAGCCTCAGACCAGATTCGGGAAATGGAGACT
TCCATAGTAGAGACATGTGCCAAGAATCGAATTCGCACTGACGAAAACCT
CTACTCTTTGTTAGAGACCCGAGATGCAATTTCTGAGCAGTCTACTGAGC
TCAAGAATGCCAAACAGTCTGCTGCTGAGATTACCATTTCAGTGAACGAA
GCTCATCGAGAACTGCTTGAAAAGGTTCAAATCCGCAAAAATCTTGACTC
TGCATTGGCTATTGCATCACAGACAAGAAGAATTGTGAGAATGTTTGCAA
GAACAGAAGATATAATCGATGCGCAGCGGCTTTATACAGCATTTTGTATG
CTGAAAATGCTTGAAGATGATATCAAATCGATACGAAAAGGAACTGTCAT
CGAGGAACTTATACCTGATACTCAGAAATTAAGAACGAAGATTATGATGC
AAGCCCACAAAGCAACACACAACTGGCTTAGTATGGTGCGCAAGTTTGAA
CACGCTTTAGGTGAATATGCTTTGTATCATGCTGGTGCGCAGACTGTTGC
TTGTAATTGTTTTCTCGAGACATGCCGCGTTTCTTCGGGCGGTGACAGAC
ATATTCTTCCATACTTACCACCACTTGCAGGACCGGGGGGTCTTGGGAAG
CCATGGATCCCGCTTCTGACTGCTAGATGTATTGTCCCCGTTCCTTTGTC
TCAAAGAGGGCCACGGGGTAGGAGTTTAAAGGGGCCGAGCTTGATTCGGT
TGCCATTGTTATCGGCTTCAAATGGAGGCTCATTTCCAATCGAAAGCAAC
AGCGAGAAGCGTAGGAGTTGGAAAAGGTTCATGCAAGAGTACAAAGGAGA
AGTACCATCGCTCTATCTACGCCCATTGTTACAAAGCATTCAGGTAAACA
AGGGGATGGATTTGCTTACAGACATGCAAGGTGAGTACCGACGAGAACGC
TCAGACCAATTAAACAGGATCTTCGAAGTTACCAACAACAGTGAAGAAGA
CCCGTTTGCGATAGCCACAGATGCGTTTCCGATTATTGAGACTCTGAAAA
GCGCCATGATCGAAGAAACCGTATGCAAAGTATGTGGCTTCTTTGTTGTT
GAAAGGGCCGTAGAAAAATATGCTGATTCGACATTGGTTCCACGCGCTGT
TATAGACGGGGAGTGGTGGCCATGGGCCTTTGGGCGCCTGAATGTTTTAC
TCGCTAAAATGGATAAGAGTTCAGAGGATAGCTCTTCAGAAAAGAACTGT
GTGCGAAGTATGCGGGAGATTGTATCTCGATTTGCAAGGGCCAACGGGTT
GTCAGGGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1296106..1297515-

>Gchil4187.t1 ID=Gchil4187.t1|Name=Gchil4187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1410bp|location=Sequence derived from alignment at tig00004373_pilon:1296106..1297515- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGATGTTACTGAAACATCAGAACTGCCGAACTCCCGTGATGAAGC
CATTGATCTTCTCAACGCAGTGCGTACCGCGTTTTCAAAAAATTCGGACC
CGGAAATGTTCCTTGCCCGAGCCTCAGACCAGATTCGGGAAATGGAGACT
TCCATAGTAGAGACATGTGCCAAGAATCGAATTCGCACTGACGAAAACCT
CTACTCTTTGTTAGAGACCCGAGATGCAATTTCTGAGCAGTCTACTGAGC
TCAAGAATGCCAAACAGTCTGCTGCTGAGATTACCATTTCAGTGAACGAA
GCTCATCGAGAACTGCTTGAAAAGGTTCAAATCCGCAAAAATCTTGACTC
TGCATTGGCTATTGCATCACAGACAAGAAGAATTGTGAGAATGTTTGCAA
GAACAGAAGATATAATCGATGCGCAGCGGCTTTATACAGCATTTTGTATG
CTGAAAATGCTTGAAGATGATATCAAATCGATACGAAAAGGAACTGTCAT
CGAGGAACTTATACCTGATACTCAGAAATTAAGAACGAAGATTATGATGC
AAGCCCACAAAGCAACACACAACTGGCTTAGTATGGTGCGCAAGTTTGAA
CACGCTTTAGGTGAATATGCTTTGTATCATGCTGGTGCGCAGACTGTTGC
TTGTAATTGTTTTCTCGAGACATGCCGCGTTTCTTCGGGCGGTGACAGAC
ATATTCTTCCATACTTACCACCACTTGCAGGACCGGGGGGTCTTGGGAAG
CCATGGATCCCGCTTCTGACTGCTAGATGTATTGTCCCCGTTCCTTTGTC
TCAAAGAGGGCCACGGGGTAGGAGTTTAAAGGGGCCGAGCTTGATTCGGT
TGCCATTGTTATCGGCTTCAAATGGAGGCTCATTTCCAATCGAAAGCAAC
AGCGAGAAGCGTAGGAGTTGGAAAAGGTTCATGCAAGAGTACAAAGGAGA
AGTACCATCGCTCTATCTACGCCCATTGTTACAAAGCATTCAGGTAAACA
AGGGGATGGATTTGCTTACAGACATGCAAGGTGAGTACCGACGAGAACGC
TCAGACCAATTAAACAGGATCTTCGAAGTTACCAACAACAGTGAAGAAGA
CCCGTTTGCGATAGCCACAGATGCGTTTCCGATTATTGAGACTCTGAAAA
GCGCCATGATCGAAGAAACCGTATGCAAAGTATGTGGCTTCTTTGTTGTT
GAAAGGGCCGTAGAAAAATATGCTGATTCGACATTGGTTCCACGCGCTGT
TATAGACGGGGAGTGGTGGCCATGGGCCTTTGGGCGCCTGAATGTTTTAC
TCGCTAAAATGGATAAGAGTTCAGAGGATAGCTCTTCAGAAAAGAACTGT
GTGCGAAGTATGCGGGAGATTGTATCTCGATTTGCAAGGGCCAACGGGTT
GTCAGGGTGA
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