Gchil4184.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4184.t1
Unique NameGchil4184.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1288076..1289867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4184Gchil4184Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1288076..1289867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4184.t1Gchil4184.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1288076..1289867 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4184.t1.start1Gchil4184.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1288076..1288078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4184.t1.CDS1Gchil4184.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1288076..1288114 +
Gchil4184.t1.CDS2Gchil4184.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1288233..1288330 +
Gchil4184.t1.CDS3Gchil4184.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1288481..1289867 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4184.t1.exon1Gchil4184.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1288076..1288114 +
Gchil4184.t1.exon2Gchil4184.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1288233..1288330 +
Gchil4184.t1.exon3Gchil4184.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1288481..1289867 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4184.t1.intron1Gchil4184.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1288115..1288232 +
Gchil4184.t1.intron2Gchil4184.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1288331..1288480 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4184.t1.stop1Gchil4184.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1289865..1289867 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4184.t1 ID=Gchil4184.t1|Name=Gchil4184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MCWVSTPAHVQIELVELKNSKPCSKLQRAVVDGEMLGNGDLNTEHNTPRS
FLRPFVEQKVPKPAEHFLPPVALALISARLTFPPNRTWYRAFENSVVSRQ
TLSCGLHLQILKRRPGVEPTGYANHPRLTEAKISNMSTTSSEDKVQPHDN
AQRGHHSSHVESNERERSHPTYYYASSSEPDRRNRRSASERSFDSHMQRR
PRSRSKDNDSAKYDGRRRRTPSIEPSRSEGSRQSPAQLFKGARIGKRIRR
RPQRWEGERTDGRSQRMGLARVKDETHIDMPTGESTVSMDSSTSEADIPV
VDSPYADLRKAVAACDLQPSRRDMVDWFHSWQLRAVSKQAAQQKALHVFL
KRRLRKRTTRSPEHDRMEQEALRNARLAIRLSDKDGEMRTPNDLPPEFDL
INEDFVVPNEIRLPLEAYMPRRMVANGEAISREELLSIVPQPPQELDSTT
GMDQTQGDKWMRLPTVLASAQWNSRKSNGRRRMYQNKQEQQKVKMEDTMR
VEDSLRS*
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spliced messenger RNA

>Gchil4184.t1 ID=Gchil4184.t1|Name=Gchil4184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00004373_pilon:1288076..1289867+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTGGGTGTCTACGCCTGCACATGTGCAAATTGAGTTGGTAGAACT
GAAAAACTCAAAGCCGTGTTCAAAGCTTCAACGAGCCGTCGTCGATGGAG
AGATGTTGGGCAATGGCGATTTGAACACTGAGCATAATACGCCTCGAAGC
TTTTTGCGGCCCTTCGTCGAACAAAAAGTTCCGAAACCAGCAGAGCACTT
CCTACCTCCGGTCGCGCTCGCCTTGATTTCTGCTAGACTAACTTTTCCTC
CCAACCGCACCTGGTACCGCGCTTTTGAAAATAGTGTTGTGAGCCGACAG
ACACTGTCCTGTGGACTTCACCTGCAAATTCTGAAACGGCGGCCCGGTGT
GGAGCCCACAGGCTACGCCAACCATCCTCGCTTGACAGAAGCCAAAATTT
CAAACATGTCCACCACCTCAAGTGAAGATAAGGTGCAACCGCATGACAAT
GCGCAACGCGGCCATCACTCAAGCCACGTCGAAAGTAACGAAAGGGAGCG
CTCCCACCCGACGTACTACTACGCCTCCTCTTCCGAGCCAGACCGAAGAA
ATCGACGAAGCGCCTCAGAGAGGTCTTTCGATTCACACATGCAGCGCCGT
CCGAGGTCTCGCTCAAAAGACAATGACTCAGCAAAGTACGACGGTCGTCG
ACGCCGGACACCTTCCATTGAACCGTCACGTTCGGAGGGCTCTCGCCAAA
GTCCGGCTCAGCTTTTCAAGGGTGCGCGAATTGGAAAACGAATCAGAAGA
CGCCCGCAAAGATGGGAGGGCGAGCGCACGGACGGCCGTTCACAAAGAAT
GGGACTAGCTCGTGTGAAGGACGAGACTCATATAGATATGCCAACCGGCG
AGAGTACTGTATCTATGGATTCATCTACGTCAGAAGCAGACATTCCGGTG
GTGGACAGTCCGTACGCTGACTTGCGCAAAGCCGTTGCTGCATGTGATTT
GCAACCTAGCAGACGGGATATGGTGGACTGGTTTCATTCTTGGCAGCTGC
GTGCTGTATCCAAACAAGCGGCTCAACAGAAGGCCCTGCATGTATTTCTA
AAAAGAAGACTACGGAAGCGAACAACGAGGTCCCCGGAACATGACCGAAT
GGAGCAAGAGGCGCTTCGAAACGCTCGTCTCGCGATCCGACTAAGCGATA
AGGATGGTGAAATGCGAACACCGAACGATCTACCTCCTGAATTTGATCTG
ATCAACGAGGATTTTGTAGTTCCCAACGAAATCCGGCTTCCCTTGGAAGC
TTACATGCCGCGACGTATGGTCGCGAACGGGGAAGCAATATCCCGCGAAG
AGCTTCTTTCAATCGTTCCACAACCACCCCAAGAGCTGGATAGCACCACT
GGGATGGATCAGACTCAAGGGGATAAGTGGATGAGATTACCCACCGTTCT
TGCCTCCGCGCAATGGAATTCGAGGAAATCAAACGGTCGCCGAAGGATGT
ACCAAAACAAGCAAGAGCAGCAAAAGGTCAAGATGGAGGATACTATGCGA
GTAGAGGATTCACTCCGGTCTTAG
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protein sequence of Gchil4184.t1

>Gchil4184.t1 ID=Gchil4184.t1|Name=Gchil4184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MCWVSTPAHVQIELVELKNSKPCSKLQRAVVDGEMLGNGDLNTEHNTPRS
FLRPFVEQKVPKPAEHFLPPVALALISARLTFPPNRTWYRAFENSVVSRQ
TLSCGLHLQILKRRPGVEPTGYANHPRLTEAKISNMSTTSSEDKVQPHDN
AQRGHHSSHVESNERERSHPTYYYASSSEPDRRNRRSASERSFDSHMQRR
PRSRSKDNDSAKYDGRRRRTPSIEPSRSEGSRQSPAQLFKGARIGKRIRR
RPQRWEGERTDGRSQRMGLARVKDETHIDMPTGESTVSMDSSTSEADIPV
VDSPYADLRKAVAACDLQPSRRDMVDWFHSWQLRAVSKQAAQQKALHVFL
KRRLRKRTTRSPEHDRMEQEALRNARLAIRLSDKDGEMRTPNDLPPEFDL
INEDFVVPNEIRLPLEAYMPRRMVANGEAISREELLSIVPQPPQELDSTT
GMDQTQGDKWMRLPTVLASAQWNSRKSNGRRRMYQNKQEQQKVKMEDTMR
VEDSLRS*
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mRNA from alignment at tig00004373_pilon:1288076..1289867+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4184.t1 ID=Gchil4184.t1|Name=Gchil4184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1792bp|location=Sequence derived from alignment at tig00004373_pilon:1288076..1289867+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTGGGTGTCTACGCCTGCACATGTGCAAATTGAGGTATGTTTCAA
AAACTACATAGTTTCTAAGAGGTTTTTAATTTTTGTTTAAAAATTCTTTT
TGATGATATATAAGTTTTTTAACTGCAAATAATACTTCATTTTATGCCAA
ATTGTAGTTGGTAGAACTGAAAAACTCAAAGCCGTGTTCAAAGCTTCAAC
GAGCCGTCGTCGATGGAGAGATGTTGGGCAATGGCGATTTGAACACTGAG
CATAAGTGTGTACAAGGCCGGCGCTGAGCTAACATGTCTTTTCGACCAAT
CTTAACAGCTTGAACTAGCTTGTACTTAGCCCGGAGGCATTGATCTTTTG
TTCTGGAGGAAAACCAAAGATGCCCAACTGCGTTGCCTAAACCTACAACA
ACAAGTACGCCTCGAAGCTTTTTGCGGCCCTTCGTCGAACAAAAAGTTCC
GAAACCAGCAGAGCACTTCCTACCTCCGGTCGCGCTCGCCTTGATTTCTG
CTAGACTAACTTTTCCTCCCAACCGCACCTGGTACCGCGCTTTTGAAAAT
AGTGTTGTGAGCCGACAGACACTGTCCTGTGGACTTCACCTGCAAATTCT
GAAACGGCGGCCCGGTGTGGAGCCCACAGGCTACGCCAACCATCCTCGCT
TGACAGAAGCCAAAATTTCAAACATGTCCACCACCTCAAGTGAAGATAAG
GTGCAACCGCATGACAATGCGCAACGCGGCCATCACTCAAGCCACGTCGA
AAGTAACGAAAGGGAGCGCTCCCACCCGACGTACTACTACGCCTCCTCTT
CCGAGCCAGACCGAAGAAATCGACGAAGCGCCTCAGAGAGGTCTTTCGAT
TCACACATGCAGCGCCGTCCGAGGTCTCGCTCAAAAGACAATGACTCAGC
AAAGTACGACGGTCGTCGACGCCGGACACCTTCCATTGAACCGTCACGTT
CGGAGGGCTCTCGCCAAAGTCCGGCTCAGCTTTTCAAGGGTGCGCGAATT
GGAAAACGAATCAGAAGACGCCCGCAAAGATGGGAGGGCGAGCGCACGGA
CGGCCGTTCACAAAGAATGGGACTAGCTCGTGTGAAGGACGAGACTCATA
TAGATATGCCAACCGGCGAGAGTACTGTATCTATGGATTCATCTACGTCA
GAAGCAGACATTCCGGTGGTGGACAGTCCGTACGCTGACTTGCGCAAAGC
CGTTGCTGCATGTGATTTGCAACCTAGCAGACGGGATATGGTGGACTGGT
TTCATTCTTGGCAGCTGCGTGCTGTATCCAAACAAGCGGCTCAACAGAAG
GCCCTGCATGTATTTCTAAAAAGAAGACTACGGAAGCGAACAACGAGGTC
CCCGGAACATGACCGAATGGAGCAAGAGGCGCTTCGAAACGCTCGTCTCG
CGATCCGACTAAGCGATAAGGATGGTGAAATGCGAACACCGAACGATCTA
CCTCCTGAATTTGATCTGATCAACGAGGATTTTGTAGTTCCCAACGAAAT
CCGGCTTCCCTTGGAAGCTTACATGCCGCGACGTATGGTCGCGAACGGGG
AAGCAATATCCCGCGAAGAGCTTCTTTCAATCGTTCCACAACCACCCCAA
GAGCTGGATAGCACCACTGGGATGGATCAGACTCAAGGGGATAAGTGGAT
GAGATTACCCACCGTTCTTGCCTCCGCGCAATGGAATTCGAGGAAATCAA
ACGGTCGCCGAAGGATGTACCAAAACAAGCAAGAGCAGCAAAAGGTCAAG
ATGGAGGATACTATGCGAGTAGAGGATTCACTCCGGTCTTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1288076..1289867+

>Gchil4184.t1 ID=Gchil4184.t1|Name=Gchil4184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00004373_pilon:1288076..1289867+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTGGGTGTCTACGCCTGCACATGTGCAAATTGAGTTGGTAGAACT
GAAAAACTCAAAGCCGTGTTCAAAGCTTCAACGAGCCGTCGTCGATGGAG
AGATGTTGGGCAATGGCGATTTGAACACTGAGCATAATACGCCTCGAAGC
TTTTTGCGGCCCTTCGTCGAACAAAAAGTTCCGAAACCAGCAGAGCACTT
CCTACCTCCGGTCGCGCTCGCCTTGATTTCTGCTAGACTAACTTTTCCTC
CCAACCGCACCTGGTACCGCGCTTTTGAAAATAGTGTTGTGAGCCGACAG
ACACTGTCCTGTGGACTTCACCTGCAAATTCTGAAACGGCGGCCCGGTGT
GGAGCCCACAGGCTACGCCAACCATCCTCGCTTGACAGAAGCCAAAATTT
CAAACATGTCCACCACCTCAAGTGAAGATAAGGTGCAACCGCATGACAAT
GCGCAACGCGGCCATCACTCAAGCCACGTCGAAAGTAACGAAAGGGAGCG
CTCCCACCCGACGTACTACTACGCCTCCTCTTCCGAGCCAGACCGAAGAA
ATCGACGAAGCGCCTCAGAGAGGTCTTTCGATTCACACATGCAGCGCCGT
CCGAGGTCTCGCTCAAAAGACAATGACTCAGCAAAGTACGACGGTCGTCG
ACGCCGGACACCTTCCATTGAACCGTCACGTTCGGAGGGCTCTCGCCAAA
GTCCGGCTCAGCTTTTCAAGGGTGCGCGAATTGGAAAACGAATCAGAAGA
CGCCCGCAAAGATGGGAGGGCGAGCGCACGGACGGCCGTTCACAAAGAAT
GGGACTAGCTCGTGTGAAGGACGAGACTCATATAGATATGCCAACCGGCG
AGAGTACTGTATCTATGGATTCATCTACGTCAGAAGCAGACATTCCGGTG
GTGGACAGTCCGTACGCTGACTTGCGCAAAGCCGTTGCTGCATGTGATTT
GCAACCTAGCAGACGGGATATGGTGGACTGGTTTCATTCTTGGCAGCTGC
GTGCTGTATCCAAACAAGCGGCTCAACAGAAGGCCCTGCATGTATTTCTA
AAAAGAAGACTACGGAAGCGAACAACGAGGTCCCCGGAACATGACCGAAT
GGAGCAAGAGGCGCTTCGAAACGCTCGTCTCGCGATCCGACTAAGCGATA
AGGATGGTGAAATGCGAACACCGAACGATCTACCTCCTGAATTTGATCTG
ATCAACGAGGATTTTGTAGTTCCCAACGAAATCCGGCTTCCCTTGGAAGC
TTACATGCCGCGACGTATGGTCGCGAACGGGGAAGCAATATCCCGCGAAG
AGCTTCTTTCAATCGTTCCACAACCACCCCAAGAGCTGGATAGCACCACT
GGGATGGATCAGACTCAAGGGGATAAGTGGATGAGATTACCCACCGTTCT
TGCCTCCGCGCAATGGAATTCGAGGAAATCAAACGGTCGCCGAAGGATGT
ACCAAAACAAGCAAGAGCAGCAAAAGGTCAAGATGGAGGATACTATGCGA
GTAGAGGATTCACTCCGGTCTTAG
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