Gchil4181.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4181.t1
Unique NameGchil4181.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1278346..1279902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707004.1
Preferred nameCDC20
PFAMsANAPC4_WD40,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K02084,ko:K03363,ko:K06709
KEGG Pathwayko01524,ko04110,ko04111,ko04113,ko04114,ko04115,ko04120,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05166,ko05200,ko05203,ko05222,map01524,map04110,map04111,map04113,map04114,map04115,map04120,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05166,map05200,map05203,map05222
KEGG ModuleM00389,M00685
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007143,GO:0007144,GO:0007147,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0007399,GO:0008022,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010646,GO:0010720,GO:0010939,GO:0010941,GO:0010975,GO:0015630,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019827,GO:0019899,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030162,GO:0030163,GO:0030718,GO:0031145,GO:0031323,GO:0031325,GO:0031344,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031915,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0036211,GO:0040020,GO:0042127,GO:0042826,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043902,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045664,GO:0045787,GO:0048167,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051445,GO:0051446,GO:0051603,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0051962,GO:0060255,GO:0060281,GO:0060282,GO:0060284,GO:0060547,GO:0060548,GO:0061630,GO:0061659,GO:0061982,GO:0061983,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090128,GO:0090129,GO:0090307,GO:0097150,GO:0098687,GO:0098727,GO:0098813,GO:0099177,GO:0120035,GO:0140013,GO:0140014,GO:0140096,GO:1900193,GO:1900195,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901990,GO:1902494,GO:1902850,GO:1903046,GO:1903047,GO:1903320,GO:1903322,GO:1903429,GO:1903431,GO:1903538,GO:1904146,GO:1904666,GO:1904668,GO:1905879,GO:1905881,GO:1990234,GO:2000026,GO:2000241,GO:2000243
Evalue2.82e-187
EggNOG OGsCOG2319@1|root,KOG0305@2759|Eukaryota
DescriptionCell division cycle
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4181Gchil4181Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1278346..1279902 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4181.t1.start1Gchil4181.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1278346..1278348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4181.t1.CDS1Gchil4181.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1278346..1279902 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4181.t1.exon1Gchil4181.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1278346..1279902 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4181.t1.stop1Gchil4181.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1279900..1279902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4181.t1Gchil4181.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1278346..1279902 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4181.t1 ID=Gchil4181.t1|Name=Gchil4181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp
MNDFNDFSNFSAPVSSGPLPRWQRKALETSQRVNRPASVSSTSKTPKSGK
RSKTPSADRFIPNRKAMNMDVCRMNLSFDSGKENGQNVSASRHQPTSPSK
SMDKSQPNQSGSLEYSAVLASSLLDLPPSSSSDINDLPNSKILAFGDKAP
AAKEGYLNPHRVLYNQNSFNSRVRRNKFRHIPQAPEKILDAPGLLEDFYL
NLVDWGSNNTLAVALAESVYLWNADTGKIEQLCETDPDDCITSVAWISEG
NYLAIGTNSTEVQIWDVDKMSCTRRMRSHAGRVGALAWNGPLLSSGSRDS
QIHNHDVRIPDHHVATLAAHTQEICGLKWSPNGTQLASGGNDNLVCIWDN
SSVDSRWAPKYRFDHHNAAVKALAWCPWQNNLLATGGGTADRTLRFWNTA
SGACVNSIDTKSQVCSILWSPHEKELVTSHGFSQNQLTVWKYPSLARMAE
LKGHSSRVLHMALSPDGQTVVSAAADETLRFWKVFAGNDSGRSGNRSGQF
GKSDLSSSRSLRRGVNIR*
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spliced messenger RNA

>Gchil4181.t1 ID=Gchil4181.t1|Name=Gchil4181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00004373_pilon:1278346..1279902+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATTTCAACGACTTCAGCAATTTCAGTGCTCCTGTTTCGTCGGG
ACCCTTGCCGAGATGGCAGCGGAAAGCCCTAGAAACATCGCAACGCGTCA
ATCGCCCGGCCTCGGTTTCATCTACTTCGAAAACACCAAAATCTGGAAAG
CGTTCAAAGACTCCTTCCGCCGACCGCTTTATCCCGAACAGGAAAGCCAT
GAACATGGACGTGTGTCGAATGAACCTCAGTTTTGATTCCGGAAAAGAGA
ATGGACAAAATGTTTCCGCTTCCCGTCACCAACCAACTTCGCCATCCAAG
TCGATGGACAAGTCTCAGCCGAACCAAAGCGGTTCACTTGAATATTCTGC
TGTGTTAGCTTCTTCTCTGTTAGATCTTCCTCCTTCTTCTTCATCTGATA
TCAATGATCTTCCCAACAGCAAGATTCTTGCTTTTGGTGATAAGGCACCG
GCCGCCAAAGAAGGGTACCTTAATCCTCATCGCGTGCTGTACAATCAGAA
CTCTTTTAATTCTCGCGTGCGTCGCAACAAGTTCCGCCACATTCCGCAAG
CTCCAGAAAAGATTTTGGACGCCCCTGGCCTTCTAGAAGATTTCTATCTC
AACCTTGTTGACTGGGGATCCAACAACACTCTGGCGGTTGCATTAGCCGA
AAGTGTGTATTTGTGGAACGCCGATACGGGTAAGATTGAACAACTTTGTG
AGACCGACCCCGATGATTGCATTACTTCAGTAGCGTGGATTTCGGAAGGC
AACTATCTCGCAATAGGTACCAACAGTACTGAGGTGCAGATTTGGGACGT
AGACAAAATGTCATGTACTCGAAGAATGCGCTCTCATGCCGGCCGAGTTG
GTGCTCTTGCATGGAACGGTCCGCTCTTGTCTTCCGGGTCGAGAGACAGT
CAAATCCATAACCACGATGTCCGCATTCCTGATCACCATGTCGCCACCCT
AGCCGCACACACTCAAGAGATATGTGGCTTGAAGTGGAGCCCGAATGGAA
CACAGTTGGCTTCGGGTGGAAATGACAATCTTGTTTGCATCTGGGACAAC
TCAAGTGTTGATTCTCGATGGGCCCCTAAGTACAGGTTCGATCATCATAA
TGCTGCCGTAAAAGCTCTTGCTTGGTGTCCTTGGCAGAACAACTTGCTCG
CCACCGGTGGTGGAACAGCCGATCGTACTCTGCGATTTTGGAACACCGCC
AGTGGGGCGTGTGTGAACTCCATCGACACCAAGTCTCAGGTGTGCTCCAT
TCTTTGGTCTCCGCACGAGAAAGAATTGGTTACCAGTCATGGATTTTCGC
AAAACCAACTCACCGTTTGGAAGTATCCTTCTCTTGCTAGAATGGCTGAA
CTCAAGGGACACTCTTCGCGCGTGCTGCACATGGCTCTCAGCCCAGATGG
CCAAACTGTCGTCTCAGCAGCTGCCGATGAGACGCTCCGGTTCTGGAAGG
TCTTTGCTGGCAATGATTCAGGGCGTTCTGGAAATCGATCAGGTCAATTT
GGAAAGAGCGATCTTTCATCAAGTCGGAGCCTTCGCAGGGGCGTAAATAT
TCGATGA
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protein sequence of Gchil4181.t1

>Gchil4181.t1 ID=Gchil4181.t1|Name=Gchil4181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=519bp
MNDFNDFSNFSAPVSSGPLPRWQRKALETSQRVNRPASVSSTSKTPKSGK
RSKTPSADRFIPNRKAMNMDVCRMNLSFDSGKENGQNVSASRHQPTSPSK
SMDKSQPNQSGSLEYSAVLASSLLDLPPSSSSDINDLPNSKILAFGDKAP
AAKEGYLNPHRVLYNQNSFNSRVRRNKFRHIPQAPEKILDAPGLLEDFYL
NLVDWGSNNTLAVALAESVYLWNADTGKIEQLCETDPDDCITSVAWISEG
NYLAIGTNSTEVQIWDVDKMSCTRRMRSHAGRVGALAWNGPLLSSGSRDS
QIHNHDVRIPDHHVATLAAHTQEICGLKWSPNGTQLASGGNDNLVCIWDN
SSVDSRWAPKYRFDHHNAAVKALAWCPWQNNLLATGGGTADRTLRFWNTA
SGACVNSIDTKSQVCSILWSPHEKELVTSHGFSQNQLTVWKYPSLARMAE
LKGHSSRVLHMALSPDGQTVVSAAADETLRFWKVFAGNDSGRSGNRSGQF
GKSDLSSSRSLRRGVNIR*
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mRNA from alignment at tig00004373_pilon:1278346..1279902+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4181.t1 ID=Gchil4181.t1|Name=Gchil4181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00004373_pilon:1278346..1279902+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATGATTTCAACGACTTCAGCAATTTCAGTGCTCCTGTTTCGTCGGG
ACCCTTGCCGAGATGGCAGCGGAAAGCCCTAGAAACATCGCAACGCGTCA
ATCGCCCGGCCTCGGTTTCATCTACTTCGAAAACACCAAAATCTGGAAAG
CGTTCAAAGACTCCTTCCGCCGACCGCTTTATCCCGAACAGGAAAGCCAT
GAACATGGACGTGTGTCGAATGAACCTCAGTTTTGATTCCGGAAAAGAGA
ATGGACAAAATGTTTCCGCTTCCCGTCACCAACCAACTTCGCCATCCAAG
TCGATGGACAAGTCTCAGCCGAACCAAAGCGGTTCACTTGAATATTCTGC
TGTGTTAGCTTCTTCTCTGTTAGATCTTCCTCCTTCTTCTTCATCTGATA
TCAATGATCTTCCCAACAGCAAGATTCTTGCTTTTGGTGATAAGGCACCG
GCCGCCAAAGAAGGGTACCTTAATCCTCATCGCGTGCTGTACAATCAGAA
CTCTTTTAATTCTCGCGTGCGTCGCAACAAGTTCCGCCACATTCCGCAAG
CTCCAGAAAAGATTTTGGACGCCCCTGGCCTTCTAGAAGATTTCTATCTC
AACCTTGTTGACTGGGGATCCAACAACACTCTGGCGGTTGCATTAGCCGA
AAGTGTGTATTTGTGGAACGCCGATACGGGTAAGATTGAACAACTTTGTG
AGACCGACCCCGATGATTGCATTACTTCAGTAGCGTGGATTTCGGAAGGC
AACTATCTCGCAATAGGTACCAACAGTACTGAGGTGCAGATTTGGGACGT
AGACAAAATGTCATGTACTCGAAGAATGCGCTCTCATGCCGGCCGAGTTG
GTGCTCTTGCATGGAACGGTCCGCTCTTGTCTTCCGGGTCGAGAGACAGT
CAAATCCATAACCACGATGTCCGCATTCCTGATCACCATGTCGCCACCCT
AGCCGCACACACTCAAGAGATATGTGGCTTGAAGTGGAGCCCGAATGGAA
CACAGTTGGCTTCGGGTGGAAATGACAATCTTGTTTGCATCTGGGACAAC
TCAAGTGTTGATTCTCGATGGGCCCCTAAGTACAGGTTCGATCATCATAA
TGCTGCCGTAAAAGCTCTTGCTTGGTGTCCTTGGCAGAACAACTTGCTCG
CCACCGGTGGTGGAACAGCCGATCGTACTCTGCGATTTTGGAACACCGCC
AGTGGGGCGTGTGTGAACTCCATCGACACCAAGTCTCAGGTGTGCTCCAT
TCTTTGGTCTCCGCACGAGAAAGAATTGGTTACCAGTCATGGATTTTCGC
AAAACCAACTCACCGTTTGGAAGTATCCTTCTCTTGCTAGAATGGCTGAA
CTCAAGGGACACTCTTCGCGCGTGCTGCACATGGCTCTCAGCCCAGATGG
CCAAACTGTCGTCTCAGCAGCTGCCGATGAGACGCTCCGGTTCTGGAAGG
TCTTTGCTGGCAATGATTCAGGGCGTTCTGGAAATCGATCAGGTCAATTT
GGAAAGAGCGATCTTTCATCAAGTCGGAGCCTTCGCAGGGGCGTAAATAT
TCGATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1278346..1279902+

>Gchil4181.t1 ID=Gchil4181.t1|Name=Gchil4181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00004373_pilon:1278346..1279902+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATGATTTCAACGACTTCAGCAATTTCAGTGCTCCTGTTTCGTCGGG
ACCCTTGCCGAGATGGCAGCGGAAAGCCCTAGAAACATCGCAACGCGTCA
ATCGCCCGGCCTCGGTTTCATCTACTTCGAAAACACCAAAATCTGGAAAG
CGTTCAAAGACTCCTTCCGCCGACCGCTTTATCCCGAACAGGAAAGCCAT
GAACATGGACGTGTGTCGAATGAACCTCAGTTTTGATTCCGGAAAAGAGA
ATGGACAAAATGTTTCCGCTTCCCGTCACCAACCAACTTCGCCATCCAAG
TCGATGGACAAGTCTCAGCCGAACCAAAGCGGTTCACTTGAATATTCTGC
TGTGTTAGCTTCTTCTCTGTTAGATCTTCCTCCTTCTTCTTCATCTGATA
TCAATGATCTTCCCAACAGCAAGATTCTTGCTTTTGGTGATAAGGCACCG
GCCGCCAAAGAAGGGTACCTTAATCCTCATCGCGTGCTGTACAATCAGAA
CTCTTTTAATTCTCGCGTGCGTCGCAACAAGTTCCGCCACATTCCGCAAG
CTCCAGAAAAGATTTTGGACGCCCCTGGCCTTCTAGAAGATTTCTATCTC
AACCTTGTTGACTGGGGATCCAACAACACTCTGGCGGTTGCATTAGCCGA
AAGTGTGTATTTGTGGAACGCCGATACGGGTAAGATTGAACAACTTTGTG
AGACCGACCCCGATGATTGCATTACTTCAGTAGCGTGGATTTCGGAAGGC
AACTATCTCGCAATAGGTACCAACAGTACTGAGGTGCAGATTTGGGACGT
AGACAAAATGTCATGTACTCGAAGAATGCGCTCTCATGCCGGCCGAGTTG
GTGCTCTTGCATGGAACGGTCCGCTCTTGTCTTCCGGGTCGAGAGACAGT
CAAATCCATAACCACGATGTCCGCATTCCTGATCACCATGTCGCCACCCT
AGCCGCACACACTCAAGAGATATGTGGCTTGAAGTGGAGCCCGAATGGAA
CACAGTTGGCTTCGGGTGGAAATGACAATCTTGTTTGCATCTGGGACAAC
TCAAGTGTTGATTCTCGATGGGCCCCTAAGTACAGGTTCGATCATCATAA
TGCTGCCGTAAAAGCTCTTGCTTGGTGTCCTTGGCAGAACAACTTGCTCG
CCACCGGTGGTGGAACAGCCGATCGTACTCTGCGATTTTGGAACACCGCC
AGTGGGGCGTGTGTGAACTCCATCGACACCAAGTCTCAGGTGTGCTCCAT
TCTTTGGTCTCCGCACGAGAAAGAATTGGTTACCAGTCATGGATTTTCGC
AAAACCAACTCACCGTTTGGAAGTATCCTTCTCTTGCTAGAATGGCTGAA
CTCAAGGGACACTCTTCGCGCGTGCTGCACATGGCTCTCAGCCCAGATGG
CCAAACTGTCGTCTCAGCAGCTGCCGATGAGACGCTCCGGTTCTGGAAGG
TCTTTGCTGGCAATGATTCAGGGCGTTCTGGAAATCGATCAGGTCAATTT
GGAAAGAGCGATCTTTCATCAAGTCGGAGCCTTCGCAGGGGCGTAAATAT
TCGATGA
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