Gchil4177.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4177.t1
Unique NameGchil4177.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1263828..1264562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706923.1
PFAMsC2,FYVE,Mito_carr,WW,zf-LSD1
Max annot lvl2759|Eukaryota
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Evalue8.01e-06
EggNOG OGsCOG5021@1|root,KOG0940@2759|Eukaryota
Descriptionubiquitin protein ligase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4177Gchil4177Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1263828..1264562 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4177.t1.stop1Gchil4177.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1263828..1263830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4177.t1.CDS1Gchil4177.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1263828..1264562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4177.t1.exon1Gchil4177.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1263828..1264562 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4177.t1.start1Gchil4177.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1264560..1264562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4177.t1Gchil4177.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1263828..1264562 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4177.t1 ID=Gchil4177.t1|Name=Gchil4177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MLHALKRSTVGHSAAKNEPVNAEFETLRANLENIQKSLESAVSEIDGVQK
AYKKAAADAGKFSTSLHSVYPNDDETRTLFKKSVDQVVDVIPRDLENIVQ
PASQVCTLERMVGAYLTEIKALTADYPKLDTARKDYAMYQAKVEKLGRKD
SDNDKQSRNMSKLEDSKAKYNSLLEGIIHRMKTTSEKANLMFRAAYVAYW
IYQKEVNAVFSEHFGPSMAYAAENVDGLLKEATELQTPPSPSTT*
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spliced messenger RNA

>Gchil4177.t1 ID=Gchil4177.t1|Name=Gchil4177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004373_pilon:1263828..1264562- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCACGCTTTGAAGCGAAGCACGGTCGGTCACTCTGCCGCGAAGAA
CGAACCGGTGAACGCCGAGTTTGAAACTCTTCGCGCAAATCTTGAAAACA
TACAGAAGTCCTTGGAATCTGCAGTATCTGAAATTGACGGTGTGCAAAAG
GCATACAAGAAAGCTGCAGCAGACGCTGGGAAGTTCTCCACGTCGTTGCA
CAGTGTGTATCCGAATGATGATGAAACCCGTACACTGTTCAAAAAAAGTG
TCGATCAAGTCGTTGATGTCATTCCAAGGGATTTGGAAAATATCGTTCAG
CCCGCCTCGCAAGTATGCACCTTGGAGCGGATGGTTGGAGCCTATCTTAC
GGAGATAAAAGCTTTGACAGCGGATTACCCCAAACTGGACACTGCTCGGA
AGGACTATGCAATGTATCAGGCAAAGGTTGAGAAGCTTGGTCGCAAAGAT
TCGGATAACGACAAACAATCACGTAACATGAGCAAACTGGAAGACTCGAA
GGCCAAGTATAATTCGCTGCTGGAGGGTATTATTCATCGCATGAAGACCA
CTTCTGAGAAGGCCAATCTGATGTTCCGTGCTGCCTATGTTGCATATTGG
ATTTATCAGAAGGAAGTCAACGCTGTCTTCTCTGAACACTTTGGCCCATC
CATGGCCTATGCTGCGGAAAACGTCGACGGTCTTCTGAAAGAAGCCACCG
AACTCCAGACGCCGCCATCCCCTAGTACCACTTGA
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protein sequence of Gchil4177.t1

>Gchil4177.t1 ID=Gchil4177.t1|Name=Gchil4177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MLHALKRSTVGHSAAKNEPVNAEFETLRANLENIQKSLESAVSEIDGVQK
AYKKAAADAGKFSTSLHSVYPNDDETRTLFKKSVDQVVDVIPRDLENIVQ
PASQVCTLERMVGAYLTEIKALTADYPKLDTARKDYAMYQAKVEKLGRKD
SDNDKQSRNMSKLEDSKAKYNSLLEGIIHRMKTTSEKANLMFRAAYVAYW
IYQKEVNAVFSEHFGPSMAYAAENVDGLLKEATELQTPPSPSTT*
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mRNA from alignment at tig00004373_pilon:1263828..1264562-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4177.t1 ID=Gchil4177.t1|Name=Gchil4177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00004373_pilon:1263828..1264562- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCACGCTTTGAAGCGAAGCACGGTCGGTCACTCTGCCGCGAAGAA
CGAACCGGTGAACGCCGAGTTTGAAACTCTTCGCGCAAATCTTGAAAACA
TACAGAAGTCCTTGGAATCTGCAGTATCTGAAATTGACGGTGTGCAAAAG
GCATACAAGAAAGCTGCAGCAGACGCTGGGAAGTTCTCCACGTCGTTGCA
CAGTGTGTATCCGAATGATGATGAAACCCGTACACTGTTCAAAAAAAGTG
TCGATCAAGTCGTTGATGTCATTCCAAGGGATTTGGAAAATATCGTTCAG
CCCGCCTCGCAAGTATGCACCTTGGAGCGGATGGTTGGAGCCTATCTTAC
GGAGATAAAAGCTTTGACAGCGGATTACCCCAAACTGGACACTGCTCGGA
AGGACTATGCAATGTATCAGGCAAAGGTTGAGAAGCTTGGTCGCAAAGAT
TCGGATAACGACAAACAATCACGTAACATGAGCAAACTGGAAGACTCGAA
GGCCAAGTATAATTCGCTGCTGGAGGGTATTATTCATCGCATGAAGACCA
CTTCTGAGAAGGCCAATCTGATGTTCCGTGCTGCCTATGTTGCATATTGG
ATTTATCAGAAGGAAGTCAACGCTGTCTTCTCTGAACACTTTGGCCCATC
CATGGCCTATGCTGCGGAAAACGTCGACGGTCTTCTGAAAGAAGCCACCG
AACTCCAGACGCCGCCATCCCCTAGTACCACTTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1263828..1264562-

>Gchil4177.t1 ID=Gchil4177.t1|Name=Gchil4177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00004373_pilon:1263828..1264562- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCACGCTTTGAAGCGAAGCACGGTCGGTCACTCTGCCGCGAAGAA
CGAACCGGTGAACGCCGAGTTTGAAACTCTTCGCGCAAATCTTGAAAACA
TACAGAAGTCCTTGGAATCTGCAGTATCTGAAATTGACGGTGTGCAAAAG
GCATACAAGAAAGCTGCAGCAGACGCTGGGAAGTTCTCCACGTCGTTGCA
CAGTGTGTATCCGAATGATGATGAAACCCGTACACTGTTCAAAAAAAGTG
TCGATCAAGTCGTTGATGTCATTCCAAGGGATTTGGAAAATATCGTTCAG
CCCGCCTCGCAAGTATGCACCTTGGAGCGGATGGTTGGAGCCTATCTTAC
GGAGATAAAAGCTTTGACAGCGGATTACCCCAAACTGGACACTGCTCGGA
AGGACTATGCAATGTATCAGGCAAAGGTTGAGAAGCTTGGTCGCAAAGAT
TCGGATAACGACAAACAATCACGTAACATGAGCAAACTGGAAGACTCGAA
GGCCAAGTATAATTCGCTGCTGGAGGGTATTATTCATCGCATGAAGACCA
CTTCTGAGAAGGCCAATCTGATGTTCCGTGCTGCCTATGTTGCATATTGG
ATTTATCAGAAGGAAGTCAACGCTGTCTTCTCTGAACACTTTGGCCCATC
CATGGCCTATGCTGCGGAAAACGTCGACGGTCTTCTGAAAGAAGCCACCG
AACTCCAGACGCCGCCATCCCCTAGTACCACTTGA
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