Gchil4176.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4176.t1
Unique NameGchil4176.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1260886..1262652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1329516.JPST01000005_gene1477
Preferred nameqor
PFAMsADH_N,ADH_zinc_N,ADH_zinc_N_2
Max annot lvl91061|Bacilli
Evalue7.71e-78
EggNOG OGsCOG0604@1|root,COG0604@2|Bacteria,1TPGA@1239|Firmicutes,4HBKZ@91061|Bacilli,27B8C@186824|Thermoactinomycetaceae
DescriptionZinc-binding dehydrogenase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4176Gchil4176Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1260886..1262652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4176.t1Gchil4176.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1260886..1262652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4176.t1.stop1Gchil4176.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1260886..1260888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4176.t1.CDS1Gchil4176.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1260886..1260985 -
Gchil4176.t1.CDS2Gchil4176.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1261164..1261236 -
Gchil4176.t1.CDS3Gchil4176.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1261325..1261425 -
Gchil4176.t1.CDS4Gchil4176.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1261563..1261574 -
Gchil4176.t1.CDS5Gchil4176.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1261679..1262652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4176.t1.exon1Gchil4176.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1260886..1260985 -
Gchil4176.t1.exon2Gchil4176.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1261164..1261236 -
Gchil4176.t1.exon3Gchil4176.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1261325..1261425 -
Gchil4176.t1.exon4Gchil4176.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1261563..1261574 -
Gchil4176.t1.exon5Gchil4176.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1261679..1262652 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4176.t1.intron1Gchil4176.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1260986..1261163 -
Gchil4176.t1.intron2Gchil4176.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1261237..1261324 -
Gchil4176.t1.intron3Gchil4176.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1261426..1261562 -
Gchil4176.t1.intron4Gchil4176.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1261575..1261678 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4176.t1.start1Gchil4176.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1262650..1262652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4176.t1 ID=Gchil4176.t1|Name=Gchil4176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp
MNAIVADCTAGTAGIKIVRVPIPSPKPDECLVKVSAIGVNRADLMQIAGN
YPPPPGTTDILGLELAGHTEEGKKVCALVTGGAFAEYAVVPKATILDFPS
IVSSRLSSEQLAAIPEAFLAAYHVLFQIGNLAVNETVLINAAASGVGTSA
IQLASTINNVTIIACAGTREKLDFCGELGAHHTINYKEEDISSTVLKCTS
GRGVDLVIDCVGAAQFKANQRSLRKDGRWVMYGLLSGAKHPDINLGGIVM
KRLCLQGTTMRSRALDYRADMTASFMNRFGDMFGEGGELRPIVHKVFEGL
SSTADAFAYVRGDKNIGKVVVKLRQLANVVFSSPLHSRNNYDPSGNSCLI
LMKKAESWAHAPFLTLLSLEEENFWLEFKRKSQLESRGKHFGAQPRGRAQ
GVLTNKRAATSNSRAPAWT*
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spliced messenger RNA

>Gchil4176.t1 ID=Gchil4176.t1|Name=Gchil4176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:1260886..1262652- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCAATTGTCGCTGACTGCACGGCGGGCACGGCGGGAATCAAAAT
TGTGAGAGTCCCAATTCCGTCCCCGAAGCCTGACGAGTGTCTCGTGAAAG
TCTCAGCAATTGGCGTCAACCGCGCAGACCTGATGCAGATTGCAGGAAAT
TACCCACCTCCTCCTGGAACAACAGATATTCTAGGACTTGAACTTGCCGG
TCATACTGAAGAAGGGAAGAAAGTATGTGCATTGGTGACCGGAGGAGCTT
TTGCCGAATATGCTGTGGTTCCAAAGGCCACGATACTTGATTTTCCATCA
ATTGTATCAAGTCGATTGTCTTCTGAACAACTTGCAGCCATTCCTGAGGC
ATTTCTAGCTGCGTATCACGTTTTGTTTCAAATAGGAAACCTAGCTGTGA
ACGAAACCGTTCTGATCAATGCAGCAGCAAGCGGTGTTGGAACCAGTGCT
ATTCAACTTGCTTCCACGATCAATAACGTCACCATCATTGCTTGCGCTGG
AACGAGGGAAAAACTTGACTTCTGCGGGGAACTAGGGGCTCATCACACAA
TTAACTACAAAGAGGAAGACATATCCAGTACTGTTTTGAAGTGCACCAGT
GGCCGGGGCGTTGATCTTGTCATTGACTGCGTTGGGGCGGCCCAGTTCAA
AGCGAACCAGCGATCTTTGCGAAAGGATGGAAGATGGGTCATGTACGGTT
TGCTATCCGGCGCTAAACATCCAGACATAAACCTCGGTGGAATTGTGATG
AAACGTCTTTGCTTGCAGGGCACGACAATGAGAAGCCGAGCTCTGGATTA
CCGCGCAGATATGACTGCGTCTTTCATGAACCGATTTGGAGACATGTTCG
GTGAAGGTGGAGAACTGCGACCGATTGTTCACAAGGTGTTTGAGGGTCTT
TCCTCTACTGCGGATGCTTTTGCATATGTCCGAGGTGACAAGAACATCGG
AAAGGTGGTTGTCAAACTGAGACAACTGGCTAACGTAGTGTTCTCTTCTC
CCCTTCATTCCAGGAACAATTATGATCCTTCTGGAAATAGTTGCTTGATT
CTAATGAAGAAGGCCGAAAGCTGGGCCCATGCACCATTTCTGACTCTGCT
TTCTTTGGAAGAAGAAAACTTTTGGCTTGAGTTCAAGCGAAAATCGCAGC
TCGAATCGAGGGGGAAACATTTTGGGGCACAGCCAAGGGGCCGAGCACAG
GGTGTGTTAACGAACAAGCGCGCAGCCACGTCAAATTCCAGGGCACCCGC
GTGGACGTGA
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protein sequence of Gchil4176.t1

>Gchil4176.t1 ID=Gchil4176.t1|Name=Gchil4176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MNAIVADCTAGTAGIKIVRVPIPSPKPDECLVKVSAIGVNRADLMQIAGN
YPPPPGTTDILGLELAGHTEEGKKVCALVTGGAFAEYAVVPKATILDFPS
IVSSRLSSEQLAAIPEAFLAAYHVLFQIGNLAVNETVLINAAASGVGTSA
IQLASTINNVTIIACAGTREKLDFCGELGAHHTINYKEEDISSTVLKCTS
GRGVDLVIDCVGAAQFKANQRSLRKDGRWVMYGLLSGAKHPDINLGGIVM
KRLCLQGTTMRSRALDYRADMTASFMNRFGDMFGEGGELRPIVHKVFEGL
SSTADAFAYVRGDKNIGKVVVKLRQLANVVFSSPLHSRNNYDPSGNSCLI
LMKKAESWAHAPFLTLLSLEEENFWLEFKRKSQLESRGKHFGAQPRGRAQ
GVLTNKRAATSNSRAPAWT*
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mRNA from alignment at tig00004373_pilon:1260886..1262652-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4176.t1 ID=Gchil4176.t1|Name=Gchil4176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00004373_pilon:1260886..1262652- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCAATTGTCGCTGACTGCACGGCGGGCACGGCGGGAATCAAAAT
TGTGAGAGTCCCAATTCCGTCCCCGAAGCCTGACGAGTGTCTCGTGAAAG
TCTCAGCAATTGGCGTCAACCGCGCAGACCTGATGCAGATTGCAGGAAAT
TACCCACCTCCTCCTGGAACAACAGATATTCTAGGACTTGAACTTGCCGG
TCATACTGAAGAAGGGAAGAAAGTATGTGCATTGGTGACCGGAGGAGCTT
TTGCCGAATATGCTGTGGTTCCAAAGGCCACGATACTTGATTTTCCATCA
ATTGTATCAAGTCGATTGTCTTCTGAACAACTTGCAGCCATTCCTGAGGC
ATTTCTAGCTGCGTATCACGTTTTGTTTCAAATAGGAAACCTAGCTGTGA
ACGAAACCGTTCTGATCAATGCAGCAGCAAGCGGTGTTGGAACCAGTGCT
ATTCAACTTGCTTCCACGATCAATAACGTCACCATCATTGCTTGCGCTGG
AACGAGGGAAAAACTTGACTTCTGCGGGGAACTAGGGGCTCATCACACAA
TTAACTACAAAGAGGAAGACATATCCAGTACTGTTTTGAAGTGCACCAGT
GGCCGGGGCGTTGATCTTGTCATTGACTGCGTTGGGGCGGCCCAGTTCAA
AGCGAACCAGCGATCTTTGCGAAAGGATGGAAGATGGGTCATGTACGGTT
TGCTATCCGGCGCTAAACATCCAGACATAAACCTCGGTGGAATTGTGATG
AAACGTCTTTGCTTGCAGGGCACGACAATGAGAAGCCGAGCTCTGGATTA
CCGCGCAGATATGACTGCGTCTTTCATGAACCGATTTGGAGACATGTTCG
GTGAAGGTGGAGAACTGCGACCGATTGTTCACAAGGTGTTTGAGGGTCTT
TCCTCTACTGCGGATGCTTTTGCATATGTCCGAGGTGACAAGAACATCGG
AAAGGTGGTTGTCAAACTGAGACAGTAGGCTTTTGAATTTCAAGCCTGCG
ACATTGGTGTATGAATGCACAAACGGTGTAATCTGGTGATGTTCCAATCT
TCTATATGTATTGCTTGTGTTTGCGTAGACTGGCTAACGTGTAAGTTGTG
GGAATCATCTTTCTCACTGTAAAACGTACGACTTAACGCCATTGGAGCGC
TCATGTCTAAATGTTGGAAGAAATGACCGGAATGGGTCATCTTTCCTTGT
CTCTGTTTCTCTTACTTTTTGTGTTAGAGTGTTCTCTTCTCCCCTTCATT
CCAGGAACAATTATGATCCTTCTGGAAATAGTTGCTTGATTCTAATGAAG
AAGGCCGAAAGCTGGGCCCATGCACCATGTACTGAAGTATTCAAAAGAAG
CAAAGCGTTATCAGCAGACACGCACCCTAATCATCCCTTTCCTTTTATAC
CACCCTTTGCTCTCAGTTCTGACTCTGCTTTCTTTGGAAGAAGAAAACTT
TTGGCTTGAGTTCAAGCGAAAATCGCAGCTCGAATCGAGGTAAGAGCTCT
CCACAAATTTGTGTACAGTCCTTGCCTGTGCCCTGTCTATCGTTTTGCAG
GACTACAATCTCATTGGCGATGATGAAGGTCGACAATCTGTGTGCTATTG
TGGTTTTGACATCCACGTTTGTAATTGCCCTTTTGTTTCGAAATAAAAAA
ATCAAAACTGTGAATAGGGGGAAACATTTTGGGGCACAGCCAAGGGGCCG
AGCACAGGGTGTGTTAACGAACAAGCGCGCAGCCACGTCAAATTCCAGGG
CACCCGCGTGGACGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1260886..1262652-

>Gchil4176.t1 ID=Gchil4176.t1|Name=Gchil4176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00004373_pilon:1260886..1262652- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCAATTGTCGCTGACTGCACGGCGGGCACGGCGGGAATCAAAAT
TGTGAGAGTCCCAATTCCGTCCCCGAAGCCTGACGAGTGTCTCGTGAAAG
TCTCAGCAATTGGCGTCAACCGCGCAGACCTGATGCAGATTGCAGGAAAT
TACCCACCTCCTCCTGGAACAACAGATATTCTAGGACTTGAACTTGCCGG
TCATACTGAAGAAGGGAAGAAAGTATGTGCATTGGTGACCGGAGGAGCTT
TTGCCGAATATGCTGTGGTTCCAAAGGCCACGATACTTGATTTTCCATCA
ATTGTATCAAGTCGATTGTCTTCTGAACAACTTGCAGCCATTCCTGAGGC
ATTTCTAGCTGCGTATCACGTTTTGTTTCAAATAGGAAACCTAGCTGTGA
ACGAAACCGTTCTGATCAATGCAGCAGCAAGCGGTGTTGGAACCAGTGCT
ATTCAACTTGCTTCCACGATCAATAACGTCACCATCATTGCTTGCGCTGG
AACGAGGGAAAAACTTGACTTCTGCGGGGAACTAGGGGCTCATCACACAA
TTAACTACAAAGAGGAAGACATATCCAGTACTGTTTTGAAGTGCACCAGT
GGCCGGGGCGTTGATCTTGTCATTGACTGCGTTGGGGCGGCCCAGTTCAA
AGCGAACCAGCGATCTTTGCGAAAGGATGGAAGATGGGTCATGTACGGTT
TGCTATCCGGCGCTAAACATCCAGACATAAACCTCGGTGGAATTGTGATG
AAACGTCTTTGCTTGCAGGGCACGACAATGAGAAGCCGAGCTCTGGATTA
CCGCGCAGATATGACTGCGTCTTTCATGAACCGATTTGGAGACATGTTCG
GTGAAGGTGGAGAACTGCGACCGATTGTTCACAAGGTGTTTGAGGGTCTT
TCCTCTACTGCGGATGCTTTTGCATATGTCCGAGGTGACAAGAACATCGG
AAAGGTGGTTGTCAAACTGAGACAACTGGCTAACGTAGTGTTCTCTTCTC
CCCTTCATTCCAGGAACAATTATGATCCTTCTGGAAATAGTTGCTTGATT
CTAATGAAGAAGGCCGAAAGCTGGGCCCATGCACCATTTCTGACTCTGCT
TTCTTTGGAAGAAGAAAACTTTTGGCTTGAGTTCAAGCGAAAATCGCAGC
TCGAATCGAGGGGGAAACATTTTGGGGCACAGCCAAGGGGCCGAGCACAG
GGTGTGTTAACGAACAAGCGCGCAGCCACGTCAAATTCCAGGGCACCCGC
GTGGACGTGA
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