Gchil4175.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4175.t1
Unique NameGchil4175.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1260149..1260703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707529.1
PFAMsCyt-b5
Max annot lvl2759|Eukaryota
KEGG rclassRC00917
KEGG koko:K00507
KEGG ReactionR02222
KEGG Pathwayko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212
Evalue9.64e-27
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota
EC1.14.19.1
Descriptionheme binding
COG categoryCI
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4175Gchil4175Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1260149..1260703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4175.t1Gchil4175.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1260149..1260703 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4175.t1.stop1Gchil4175.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1260149..1260151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4175.t1.CDS1Gchil4175.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1260149..1260465 -
Gchil4175.t1.CDS2Gchil4175.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1260544..1260703 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4175.t1.exon1Gchil4175.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1260149..1260465 -
Gchil4175.t1.exon2Gchil4175.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1260544..1260703 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4175.t1.intron1Gchil4175.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1260466..1260543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4175.t1.start1Gchil4175.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1260701..1260703 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4175.t1 ID=Gchil4175.t1|Name=Gchil4175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MRSTEELPEYSSIEVAKHACADDAWLIVGGKVLDMTSWLSEHPGGDDVLL
DLAGRDATREFEDVGHSSDARSQLEQLVIGTVRPATIEELRISRSGGGGG
EKRGGGSGYDSGEVLREWLNEKTRSIGRVGAVGAIGAGVIVAAIMIRRYG
VGWSSQGN*
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spliced messenger RNA

>Gchil4175.t1 ID=Gchil4175.t1|Name=Gchil4175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004373_pilon:1260149..1260703- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCAACGGAAGAGCTGCCCGAGTACAGCTCGATTGAAGTGGCCAA
GCACGCGTGCGCGGACGATGCATGGCTGATTGTCGGGGGGAAAGTGCTGG
ACATGACGTCGTGGCTGAGCGAGCATCCGGGCGGCGACGACGTGCTGTTG
GACCTGGCCGGGCGGGATGCGACGCGGGAGTTTGAGGATGTGGGGCATTC
GAGCGACGCGCGGTCGCAGCTGGAGCAACTAGTGATCGGGACGGTGCGGC
CGGCGACAATCGAGGAGCTGCGCATATCGCGAAGTGGGGGCGGCGGCGGC
GAGAAGCGCGGCGGCGGGTCGGGGTATGACAGCGGGGAGGTGTTGCGCGA
ATGGCTCAACGAGAAGACGCGATCTATTGGACGCGTCGGGGCGGTTGGGG
CGATAGGCGCCGGGGTGATTGTGGCGGCCATTATGATTCGGCGCTACGGC
GTGGGGTGGAGCTCGCAGGGAAACTGA
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protein sequence of Gchil4175.t1

>Gchil4175.t1 ID=Gchil4175.t1|Name=Gchil4175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MRSTEELPEYSSIEVAKHACADDAWLIVGGKVLDMTSWLSEHPGGDDVLL
DLAGRDATREFEDVGHSSDARSQLEQLVIGTVRPATIEELRISRSGGGGG
EKRGGGSGYDSGEVLREWLNEKTRSIGRVGAVGAIGAGVIVAAIMIRRYG
VGWSSQGN*
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mRNA from alignment at tig00004373_pilon:1260149..1260703-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4175.t1 ID=Gchil4175.t1|Name=Gchil4175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004373_pilon:1260149..1260703- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTCAACGGAAGAGCTGCCCGAGTACAGCTCGATTGAAGTGGCCAA
GCACGCGTGCGCGGACGATGCATGGCTGATTGTCGGGGGGAAAGTGCTGG
ACATGACGTCGTGGCTGAGCGAGCATCCGGGCGGCGACGACGTGCTGTTG
GACCTGGCCGGTGAGTTTGGCGAGCAACACAGGAGCACCGTGTAGCACAG
TAGATACTAACAAGGACTTTAATGTTTTTCAAAAACAGGGCGGGATGCGA
CGCGGGAGTTTGAGGATGTGGGGCATTCGAGCGACGCGCGGTCGCAGCTG
GAGCAACTAGTGATCGGGACGGTGCGGCCGGCGACAATCGAGGAGCTGCG
CATATCGCGAAGTGGGGGCGGCGGCGGCGAGAAGCGCGGCGGCGGGTCGG
GGTATGACAGCGGGGAGGTGTTGCGCGAATGGCTCAACGAGAAGACGCGA
TCTATTGGACGCGTCGGGGCGGTTGGGGCGATAGGCGCCGGGGTGATTGT
GGCGGCCATTATGATTCGGCGCTACGGCGTGGGGTGGAGCTCGCAGGGAA
ACTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1260149..1260703-

>Gchil4175.t1 ID=Gchil4175.t1|Name=Gchil4175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00004373_pilon:1260149..1260703- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTCAACGGAAGAGCTGCCCGAGTACAGCTCGATTGAAGTGGCCAA
GCACGCGTGCGCGGACGATGCATGGCTGATTGTCGGGGGGAAAGTGCTGG
ACATGACGTCGTGGCTGAGCGAGCATCCGGGCGGCGACGACGTGCTGTTG
GACCTGGCCGGGCGGGATGCGACGCGGGAGTTTGAGGATGTGGGGCATTC
GAGCGACGCGCGGTCGCAGCTGGAGCAACTAGTGATCGGGACGGTGCGGC
CGGCGACAATCGAGGAGCTGCGCATATCGCGAAGTGGGGGCGGCGGCGGC
GAGAAGCGCGGCGGCGGGTCGGGGTATGACAGCGGGGAGGTGTTGCGCGA
ATGGCTCAACGAGAAGACGCGATCTATTGGACGCGTCGGGGCGGTTGGGG
CGATAGGCGCCGGGGTGATTGTGGCGGCCATTATGATTCGGCGCTACGGC
GTGGGGTGGAGCTCGCAGGGAAACTGA
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