Gchil4174.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4174.t1
Unique Name	Gchil4174.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1259007..1260029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003055012.1
PFAMs	Rhomboid,UBA
Max annot lvl	33090\|Viridiplantae
KEGG ko	ko:K09651
Evalue	6.3e-27
EggNOG OGs	KOG2632@1\|root,KOG2632@2759\|Eukaryota,37HEA@33090\|Viridiplantae
Description	RHOMBOID-like protein 15
COG category	J
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4174	Gchil4174	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1259007..1260029 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4174.t1.start1	Gchil4174.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1259007..1259009 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4174.t1.CDS1	Gchil4174.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1259007..1260029 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4174.t1.exon1	Gchil4174.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1259007..1260029 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4174.t1.stop1	Gchil4174.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1260027..1260029 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4174.t1	Gchil4174.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1259007..1260029 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1259007..1260029+
coding sequence from alignment at tig00004373_pilon:1259007..1260029+

mRNA sequence

>Gchil4174.t1 ID=Gchil4174.t1|Name=Gchil4174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=341bp
MALHRAASAVRASLAAARLVTIVVPAACVLLFVLPPPLRPELSLVCLQPR
RVVSQLELHRLFTFAFFHVGPLHLLLNVAAWWLLAAPFEAAVHSLSVLFV
LVLLLPLAALLHTALAFFVDALAATHLRDECAVGLSGALFSLLVLNLHAA
AAASVSVFGMFDLPSAWYPVLLAGFLQLISPALSLLGHLSGILVAHALTR
GYLSFLTPSDHSLQRVEHALQLARLARWKPDPALATLFYGTAALLPSRVP
PDRPSPSLFQRCTSAVSRLFSSQPQSQPQSPLAASAESRAPRAARPPSAI
PPHSRLLREAPETSPASPPPAAARPTTPLDSPPKPSSPSP*

spliced messenger RNA

>Gchil4174.t1 ID=Gchil4174.t1|Name=Gchil4174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004373_pilon:1259007..1260029+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGgcgctgcaccgcgccgcgtcggccgtgcgcgcgtcgctcgccgccgc
gcgcTTGGTGACGATAGTCGTGCCGGCCGCGTGCGTGCTGCTGTTCGTGC
TACCGCCACCACTACGACCGGAGCTGTCGCTCGTGTGTCTGCAGCCGCGG
CGCGTAGTGTCCCAGCTGGAGCTGCACCGTCTCTTCACGTTTGCCTTCTT
CCACGTCGGCCCGCTGCACCTGCTGCTCAACGTCGCCGCGTGGTGGCTGC
TTGCCGCCCCCTTCGAAGCCGCCGTACACTCGCTGTCCGTCCTCTTCGtg
cttgtgctgctgcttccgctcgccgcgctgctgcACACCGCTCTGGCCTT
TTTCGTCGACGCGCTGGCCGCCACGCACCTACGCGACGAGTGCGCCGTCG
GCCTATCGGGTGCTCTTTTCTCCCTTCTCGTGCTCAACTTGCACGCGGCG
GCCGCCGCCTCCGTCTCTGTCTTCGGCATGTTCGACTTGCCGTCTGCGTG
GTACCCTGTGTTGCTCGCCGGTTTTCTTCAGCTAATCTCGCCCGCCCTCA
GTTTACTCGGCCATCTGAGCGGCATCCTCGTGGCCCACGCGCTCACACGC
GGCTACCTCAGCTTCCTCACCCCGTCGGACCATTCGCTGCAGCGCGTGGA
ACATGCTCTTCAGCTCGCCCGTCTCGCGCGCTGGAAGCCCGACCCGGCGC
TCGCCACCCTGTTCTACGGCACGGCCGCCTTGCTGCCGTCCCGCGTCCCC
CCCGATCGCCCGTCGCCCTCGCTGTTCCAGCGCTGTACGTCCGCTGTGTC
GCGCCTCTTCTCCTCGCAGCCGCAGTCGCAGCCGCAGTCGCCCCTCGCTG
CGTCCGCCGAGTCGCGTGCGCCACGCGCCGCGCGCCCGCCCTCCGCCATC
CCGCCGCACAGTAGATTGCTGCGCGAGGCTCCCGAGACGAGCCCTGcgtc
gccgccaccagccgctgcgcgccccaccaccccgctcgactcgccgccCA
AACCGTCCTCTCCTTCCCCCTAG

protein sequence of Gchil4174.t1

>Gchil4174.t1 ID=Gchil4174.t1|Name=Gchil4174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=341bp
MALHRAASAVRASLAAARLVTIVVPAACVLLFVLPPPLRPELSLVCLQPR
RVVSQLELHRLFTFAFFHVGPLHLLLNVAAWWLLAAPFEAAVHSLSVLFV
LVLLLPLAALLHTALAFFVDALAATHLRDECAVGLSGALFSLLVLNLHAA
AAASVSVFGMFDLPSAWYPVLLAGFLQLISPALSLLGHLSGILVAHALTR
GYLSFLTPSDHSLQRVEHALQLARLARWKPDPALATLFYGTAALLPSRVP
PDRPSPSLFQRCTSAVSRLFSSQPQSQPQSPLAASAESRAPRAARPPSAI
PPHSRLLREAPETSPASPPPAAARPTTPLDSPPKPSSPSP*

mRNA from alignment at tig00004373_pilon:1259007..1260029+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4174.t1 ID=Gchil4174.t1|Name=Gchil4174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004373_pilon:1259007..1260029+ (Gracilaria chilensis NLEC103_M9 male)
ATGgcgctgcaccgcgccgcgtcggccgtgcgcgcgtcgctcgccgccgc
gcgcTTGGTGACGATAGTCGTGCCGGCCGCGTGCGTGCTGCTGTTCGTGC
TACCGCCACCACTACGACCGGAGCTGTCGCTCGTGTGTCTGCAGCCGCGG
CGCGTAGTGTCCCAGCTGGAGCTGCACCGTCTCTTCACGTTTGCCTTCTT
CCACGTCGGCCCGCTGCACCTGCTGCTCAACGTCGCCGCGTGGTGGCTGC
TTGCCGCCCCCTTCGAAGCCGCCGTACACTCGCTGTCCGTCCTCTTCGtg
cttgtgctgctgcttccgctcgccgcgctgctgcACACCGCTCTGGCCTT
TTTCGTCGACGCGCTGGCCGCCACGCACCTACGCGACGAGTGCGCCGTCG
GCCTATCGGGTGCTCTTTTCTCCCTTCTCGTGCTCAACTTGCACGCGGCG
GCCGCCGCCTCCGTCTCTGTCTTCGGCATGTTCGACTTGCCGTCTGCGTG
GTACCCTGTGTTGCTCGCCGGTTTTCTTCAGCTAATCTCGCCCGCCCTCA
GTTTACTCGGCCATCTGAGCGGCATCCTCGTGGCCCACGCGCTCACACGC
GGCTACCTCAGCTTCCTCACCCCGTCGGACCATTCGCTGCAGCGCGTGGA
ACATGCTCTTCAGCTCGCCCGTCTCGCGCGCTGGAAGCCCGACCCGGCGC
TCGCCACCCTGTTCTACGGCACGGCCGCCTTGCTGCCGTCCCGCGTCCCC
CCCGATCGCCCGTCGCCCTCGCTGTTCCAGCGCTGTACGTCCGCTGTGTC
GCGCCTCTTCTCCTCGCAGCCGCAGTCGCAGCCGCAGTCGCCCCTCGCTG
CGTCCGCCGAGTCGCGTGCGCCACGCGCCGCGCGCCCGCCCTCCGCCATC
CCGCCGCACAGTAGATTGCTGCGCGAGGCTCCCGAGACGAGCCCTGcgtc
gccgccaccagccgctgcgcgccccaccaccccgctcgactcgccgccCA
AACCGTCCTCTCCTTCCCCCTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:1259007..1260029+

>Gchil4174.t1 ID=Gchil4174.t1|Name=Gchil4174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00004373_pilon:1259007..1260029+ (Gracilaria chilensis NLEC103_M9 male)
ATGgcgctgcaccgcgccgcgtcggccgtgcgcgcgtcgctcgccgccgc
gcgcTTGGTGACGATAGTCGTGCCGGCCGCGTGCGTGCTGCTGTTCGTGC
TACCGCCACCACTACGACCGGAGCTGTCGCTCGTGTGTCTGCAGCCGCGG
CGCGTAGTGTCCCAGCTGGAGCTGCACCGTCTCTTCACGTTTGCCTTCTT
CCACGTCGGCCCGCTGCACCTGCTGCTCAACGTCGCCGCGTGGTGGCTGC
TTGCCGCCCCCTTCGAAGCCGCCGTACACTCGCTGTCCGTCCTCTTCGtg
cttgtgctgctgcttccgctcgccgcgctgctgcACACCGCTCTGGCCTT
TTTCGTCGACGCGCTGGCCGCCACGCACCTACGCGACGAGTGCGCCGTCG
GCCTATCGGGTGCTCTTTTCTCCCTTCTCGTGCTCAACTTGCACGCGGCG
GCCGCCGCCTCCGTCTCTGTCTTCGGCATGTTCGACTTGCCGTCTGCGTG
GTACCCTGTGTTGCTCGCCGGTTTTCTTCAGCTAATCTCGCCCGCCCTCA
GTTTACTCGGCCATCTGAGCGGCATCCTCGTGGCCCACGCGCTCACACGC
GGCTACCTCAGCTTCCTCACCCCGTCGGACCATTCGCTGCAGCGCGTGGA
ACATGCTCTTCAGCTCGCCCGTCTCGCGCGCTGGAAGCCCGACCCGGCGC
TCGCCACCCTGTTCTACGGCACGGCCGCCTTGCTGCCGTCCCGCGTCCCC
CCCGATCGCCCGTCGCCCTCGCTGTTCCAGCGCTGTACGTCCGCTGTGTC
GCGCCTCTTCTCCTCGCAGCCGCAGTCGCAGCCGCAGTCGCCCCTCGCTG
CGTCCGCCGAGTCGCGTGCGCCACGCGCCGCGCGCCCGCCCTCCGCCATC
CCGCCGCACAGTAGATTGCTGCGCGAGGCTCCCGAGACGAGCCCTGcgtc
gccgccaccagccgctgcgcgccccaccaccccgctcgactcgccgccCA
AACCGTCCTCTCCTTCCCCCTAG