Gchil4168.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4168.t2
Unique Name	Gchil4168.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1183666..1184889 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707005.1
PFAMs	DUF3223,La,RRM_1,RRM_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11090,ko:K15191
KEGG Pathway	ko05322,map05322
Evalue	1.01e-53
EggNOG OGs	COG5193@1\|root,KOG4213@2759\|Eukaryota
Description	nuclear histone mRNA catabolic process
COG category	JO
BRITE	ko00000,ko00001,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4168	Gchil4168	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1183666..1186682 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4168.t2.start1	Gchil4168.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1183666..1183668 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4168.t2.CDS1	Gchil4168.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1183666..1184889 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4168.t2.exon1	Gchil4168.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1183666..1184889 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4168.t2.stop1	Gchil4168.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1184887..1184889 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4168.t2	Gchil4168.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1183666..1184889 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1183666..1184889+
coding sequence from alignment at tig00004373_pilon:1183666..1184889+

mRNA sequence

>Gchil4168.t2 ID=Gchil4168.t2|Name=Gchil4168.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp
MVPSQTENVKQIDLEAIRTQIEYYFSDSNLPRDKFLRAKTEENEKGYVPI
PVLLSFKRLEALGANVQNVIQAVTGSELIGLDKAHTSIRRLVPLPEEDLF
PQRAIFVKGWAPGGPEPTLEYFKELFAPSGKVLSVKIRRWKDEKGRHFKG
SVFVEMESAEAVERVQAEEYTITTKDEQGYDFEKTLVVLPVDEYFAQKQK
EKKAFHERKQQERALRKQRRGKHEIKGEVKTEVKAELSSEVKSKASSDGK
SESKAEDKVEENGKQPASCDDSNDKKFTHGLILKFEGFGADVSREDIREA
FEPHGDVAWVDFRMGDSEGHIRFANEGAAKTACEAIQKSGTEFGGKVPTF
SVLEGEAEELYWKQLWEQKQANFRNSKKRRREQGRNGRGGGKRFRSGRGR
SGFRRGS*

spliced messenger RNA

>Gchil4168.t2 ID=Gchil4168.t2|Name=Gchil4168.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004373_pilon:1183666..1184889+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCTTCACAAACTGAGAATGTGAAACAAATTGACCTGGAGGCAAT
CCGAACTCAGATTGAGTACTATTTCTCAGACTCCAATCTCCCCAGGGACA
AGTTTCTACGAGCGAAGACAGAGGAGAACGAAAAAGGGTACGTCCCCATA
CCGGTTTTATTATCATTCAAAAGACTAGAGGCTCTTGGCGCAAACGTGCA
GAATGTCATTCAAGCCGTAACAGGCTCTGAGCTCATTGGGCTTGACAAGG
CACACACAAGTATTAGGCGTCTTGTTCCGCTTCCTGAGGAAGATCTTTTT
CCGCAGCGCGCAATATTTGTAAAGGGATGGGCTCCGGGCGGACCTGAGCC
CACATTGGAATATTTCAAGGAGCTCTTTGCCCCCTCTGGGAAGGTTCTTT
CTGTAAAAATACGAAGATGGAAGGATGAGAAGGGTAGACATTTCAAGGGT
TCCGTCTTTGTGGAAATGGAAAGCGCTGAAGCAGTCGAGAGAGTCCAAGC
TGAAGAATATACTATAACTACCAAAGACGAACAAGGTTATGATTTTGAGA
AAACACTTGTGGTGTTGCCGGTTGACGAATACTTTGCGCAAAAACAGAAG
GAAAAGAAAGCATTTCATGAACGAAAGCAACAAGAGCGCGCGCTCAGAAA
GCAACGAAGAGGTAAGCATGAGATTAAAGGAGAAGTGAAGACTGAGGTTA
AGGCAGAACTTTCTTCAGAGGTGAAGTCGAAAGCTAGCTCAGATGGTAAA
TCAGAAAGTAAGGCGGAAGATAAAGTGGAAGAAAATGGAAAACAGCCAGC
GTCATGCGACGATTCAAATGATAAGAAATTTACCCATGGTCTCATACTGA
AGTTTGAAGGTTTTGGTGCTGACGTCTCTCGAGAAGATATTCGCGAGGCT
TTCGAACCCCATGGAGATGTTGCATGGGTAGATTTCCGCATGGGGGATTC
CGAAGGTCACATTCGTTTTGCTAACGAGGGAGCCGCCAAAACGGCTTGCG
AAGCGATTCAAAAGTCAGGAACAGAGTTTGGCGGCAAAGTGCCCACTTTC
TCTGTGCTAGAAGGTGAGGCAGAAGAACTATATTGGAAGCAACTTTGGGA
ACAGAAGCAAGCCAACTTTAGAAATTCAAAGAAACGACGCAGAGAGCAAG
GTCGGAACGGCAGGGGCGGGGGCAAGCGGTTCCGTTCGGGCCGGGGTAGA
TCTGGTTTTCGACGAGGCTCGTAG

protein sequence of Gchil4168.t2

>Gchil4168.t2 ID=Gchil4168.t2|Name=Gchil4168.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=408bp
MVPSQTENVKQIDLEAIRTQIEYYFSDSNLPRDKFLRAKTEENEKGYVPI
PVLLSFKRLEALGANVQNVIQAVTGSELIGLDKAHTSIRRLVPLPEEDLF
PQRAIFVKGWAPGGPEPTLEYFKELFAPSGKVLSVKIRRWKDEKGRHFKG
SVFVEMESAEAVERVQAEEYTITTKDEQGYDFEKTLVVLPVDEYFAQKQK
EKKAFHERKQQERALRKQRRGKHEIKGEVKTEVKAELSSEVKSKASSDGK
SESKAEDKVEENGKQPASCDDSNDKKFTHGLILKFEGFGADVSREDIREA
FEPHGDVAWVDFRMGDSEGHIRFANEGAAKTACEAIQKSGTEFGGKVPTF
SVLEGEAEELYWKQLWEQKQANFRNSKKRRREQGRNGRGGGKRFRSGRGR
SGFRRGS*

mRNA from alignment at tig00004373_pilon:1183666..1184889+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4168.t2 ID=Gchil4168.t2|Name=Gchil4168.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004373_pilon:1183666..1184889+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCCTTCACAAACTGAGAATGTGAAACAAATTGACCTGGAGGCAAT
CCGAACTCAGATTGAGTACTATTTCTCAGACTCCAATCTCCCCAGGGACA
AGTTTCTACGAGCGAAGACAGAGGAGAACGAAAAAGGGTACGTCCCCATA
CCGGTTTTATTATCATTCAAAAGACTAGAGGCTCTTGGCGCAAACGTGCA
GAATGTCATTCAAGCCGTAACAGGCTCTGAGCTCATTGGGCTTGACAAGG
CACACACAAGTATTAGGCGTCTTGTTCCGCTTCCTGAGGAAGATCTTTTT
CCGCAGCGCGCAATATTTGTAAAGGGATGGGCTCCGGGCGGACCTGAGCC
CACATTGGAATATTTCAAGGAGCTCTTTGCCCCCTCTGGGAAGGTTCTTT
CTGTAAAAATACGAAGATGGAAGGATGAGAAGGGTAGACATTTCAAGGGT
TCCGTCTTTGTGGAAATGGAAAGCGCTGAAGCAGTCGAGAGAGTCCAAGC
TGAAGAATATACTATAACTACCAAAGACGAACAAGGTTATGATTTTGAGA
AAACACTTGTGGTGTTGCCGGTTGACGAATACTTTGCGCAAAAACAGAAG
GAAAAGAAAGCATTTCATGAACGAAAGCAACAAGAGCGCGCGCTCAGAAA
GCAACGAAGAGGTAAGCATGAGATTAAAGGAGAAGTGAAGACTGAGGTTA
AGGCAGAACTTTCTTCAGAGGTGAAGTCGAAAGCTAGCTCAGATGGTAAA
TCAGAAAGTAAGGCGGAAGATAAAGTGGAAGAAAATGGAAAACAGCCAGC
GTCATGCGACGATTCAAATGATAAGAAATTTACCCATGGTCTCATACTGA
AGTTTGAAGGTTTTGGTGCTGACGTCTCTCGAGAAGATATTCGCGAGGCT
TTCGAACCCCATGGAGATGTTGCATGGGTAGATTTCCGCATGGGGGATTC
CGAAGGTCACATTCGTTTTGCTAACGAGGGAGCCGCCAAAACGGCTTGCG
AAGCGATTCAAAAGTCAGGAACAGAGTTTGGCGGCAAAGTGCCCACTTTC
TCTGTGCTAGAAGGTGAGGCAGAAGAACTATATTGGAAGCAACTTTGGGA
ACAGAAGCAAGCCAACTTTAGAAATTCAAAGAAACGACGCAGAGAGCAAG
GTCGGAACGGCAGGGGCGGGGGCAAGCGGTTCCGTTCGGGCCGGGGTAGA
TCTGGTTTTCGACGAGGCTCGTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:1183666..1184889+

>Gchil4168.t2 ID=Gchil4168.t2|Name=Gchil4168.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00004373_pilon:1183666..1184889+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCCTTCACAAACTGAGAATGTGAAACAAATTGACCTGGAGGCAAT
CCGAACTCAGATTGAGTACTATTTCTCAGACTCCAATCTCCCCAGGGACA
AGTTTCTACGAGCGAAGACAGAGGAGAACGAAAAAGGGTACGTCCCCATA
CCGGTTTTATTATCATTCAAAAGACTAGAGGCTCTTGGCGCAAACGTGCA
GAATGTCATTCAAGCCGTAACAGGCTCTGAGCTCATTGGGCTTGACAAGG
CACACACAAGTATTAGGCGTCTTGTTCCGCTTCCTGAGGAAGATCTTTTT
CCGCAGCGCGCAATATTTGTAAAGGGATGGGCTCCGGGCGGACCTGAGCC
CACATTGGAATATTTCAAGGAGCTCTTTGCCCCCTCTGGGAAGGTTCTTT
CTGTAAAAATACGAAGATGGAAGGATGAGAAGGGTAGACATTTCAAGGGT
TCCGTCTTTGTGGAAATGGAAAGCGCTGAAGCAGTCGAGAGAGTCCAAGC
TGAAGAATATACTATAACTACCAAAGACGAACAAGGTTATGATTTTGAGA
AAACACTTGTGGTGTTGCCGGTTGACGAATACTTTGCGCAAAAACAGAAG
GAAAAGAAAGCATTTCATGAACGAAAGCAACAAGAGCGCGCGCTCAGAAA
GCAACGAAGAGGTAAGCATGAGATTAAAGGAGAAGTGAAGACTGAGGTTA
AGGCAGAACTTTCTTCAGAGGTGAAGTCGAAAGCTAGCTCAGATGGTAAA
TCAGAAAGTAAGGCGGAAGATAAAGTGGAAGAAAATGGAAAACAGCCAGC
GTCATGCGACGATTCAAATGATAAGAAATTTACCCATGGTCTCATACTGA
AGTTTGAAGGTTTTGGTGCTGACGTCTCTCGAGAAGATATTCGCGAGGCT
TTCGAACCCCATGGAGATGTTGCATGGGTAGATTTCCGCATGGGGGATTC
CGAAGGTCACATTCGTTTTGCTAACGAGGGAGCCGCCAAAACGGCTTGCG
AAGCGATTCAAAAGTCAGGAACAGAGTTTGGCGGCAAAGTGCCCACTTTC
TCTGTGCTAGAAGGTGAGGCAGAAGAACTATATTGGAAGCAACTTTGGGA
ACAGAAGCAAGCCAACTTTAGAAATTCAAAGAAACGACGCAGAGAGCAAG
GTCGGAACGGCAGGGGCGGGGGCAAGCGGTTCCGTTCGGGCCGGGGTAGA
TCTGGTTTTCGACGAGGCTCGTAG