Gchil4167.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4167.t1
Unique NameGchil4167.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1181805..1182788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702952.1
Preferred nameYMR099C
PFAMsAldose_epim
Max annot lvl2759|Eukaryota
KEGG rclassRC00563
KEGG koko:K01792
KEGG ReactionR02739
KEGG Pathwayko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130
GOsGO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005975,GO:0006950,GO:0006952,GO:0006996,GO:0007030,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0010256,GO:0016043,GO:0016853,GO:0016854,GO:0016857,GO:0034389,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044464,GO:0047938,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0071704,GO:0071840,GO:0098542
Evalue4.46e-86
EggNOG OGsCOG0676@1|root,KOG1594@2759|Eukaryota
EC5.1.3.15
Descriptionglucose-6-phosphate 1-epimerase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4167Gchil4167Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1181805..1182788 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4167.t1.stop1Gchil4167.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1181805..1181807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4167.t1.CDS1Gchil4167.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1181805..1182788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4167.t1.exon1Gchil4167.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1181805..1182788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4167.t1.start1Gchil4167.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1182786..1182788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4167.t1Gchil4167.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1181805..1182788 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4167.t1 ID=Gchil4167.t1|Name=Gchil4167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=328bp
MAANFDDIAKQLQEELNVRRRSVDQNDPNLPPMPPTDAPPEDQPIEITMG
NNNMPKVIIRHAPSSQQAQIYCYGAAVTSWTTRGEDHFWVSDQNKWQLGG
KAIRGGIPICFPQFGPYGDLVQHGFARVSDWRIRNTEVNEDGSVSAVFGL
SSESGQDATAAWPYKFDAEYTVTLSFSGLETKLSVRNTDDKPFSFTCAFH
NYFKTTTVEDARVFGFESRKHLNRLDGDKEMPEQEDSGAGTMISEETDRI
YLNAPEELAMFDFASLKVLKIKKTPTLPDTTLWNPFGAEGADPGWRNFIC
IEPACVTNPATVEPGETWVGAQLLGVE*
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spliced messenger RNA

>Gchil4167.t1 ID=Gchil4167.t1|Name=Gchil4167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004373_pilon:1181805..1182788- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTAATTTTGATGATATCGCGAAGCAGCTACAAGAGGAACTTAA
CGTTCGTCGTCGCTCTGTTGACCAAAATGACCCCAACCTTCCACCCATGC
CCCCAACCGACGCACCGCCGGAGGACCAACCAATTGAAATAACCATGGGA
AACAATAATATGCCCAAGGTTATCATTCGTCATGCACCAAGTTCGCAACA
AGCCCAAATATACTGCTATGGTGCCGCAGTGACCAGCTGGACAACTCGGG
GAGAGGACCATTTCTGGGTTTCGGATCAGAACAAGTGGCAACTAGGTGGA
AAGGCAATCAGAGGAGGTATTCCCATATGCTTTCCTCAGTTTGGTCCGTA
TGGTGACCTGGTTCAACACGGATTCGCACGTGTTTCTGATTGGCGAATCC
GCAACACGGAGGTGAATGAAGACGGTTCAGTGTCTGCTGTATTTGGCTTG
AGCAGTGAGTCTGGTCAAGATGCAACAGCAGCATGGCCTTATAAGTTTGA
TGCGGAGTACACTGTAACGCTCAGTTTTAGTGGGCTGGAAACAAAGTTAT
CGGTCAGAAACACAGATGACAAACCATTCTCATTTACGTGTGCTTTTCAC
AACTATTTTAAGACAACAACTGTTGAAGATGCTCGCGTGTTTGGATTCGA
GAGCCGAAAGCATCTCAATCGACTAGATGGCGATAAGGAAATGCCAGAAC
AGGAAGACAGCGGTGCAGGAACAATGATTAGTGAAGAAACAGATCGGATT
TATTTGAATGCACCAGAAGAACTTGCAATGTTCGACTTCGCCTCCCTGAA
AGTGCTAAAGATTAAGAAAACCCCTACATTGCCAGACACAACACTTTGGA
ATCCGTTCGGAGCGGAAGGCGCGGACCCAGGATGGAGAAATTTCATATGC
ATCGAACCAGCGTGCGTCACAAACCCAGCCACTGTTGAACCAGGGGAAAC
ATGGGTTGGAGCTCAACTGTTAGGTGTCGAGTAA
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protein sequence of Gchil4167.t1

>Gchil4167.t1 ID=Gchil4167.t1|Name=Gchil4167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MAANFDDIAKQLQEELNVRRRSVDQNDPNLPPMPPTDAPPEDQPIEITMG
NNNMPKVIIRHAPSSQQAQIYCYGAAVTSWTTRGEDHFWVSDQNKWQLGG
KAIRGGIPICFPQFGPYGDLVQHGFARVSDWRIRNTEVNEDGSVSAVFGL
SSESGQDATAAWPYKFDAEYTVTLSFSGLETKLSVRNTDDKPFSFTCAFH
NYFKTTTVEDARVFGFESRKHLNRLDGDKEMPEQEDSGAGTMISEETDRI
YLNAPEELAMFDFASLKVLKIKKTPTLPDTTLWNPFGAEGADPGWRNFIC
IEPACVTNPATVEPGETWVGAQLLGVE*
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mRNA from alignment at tig00004373_pilon:1181805..1182788-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4167.t1 ID=Gchil4167.t1|Name=Gchil4167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004373_pilon:1181805..1182788- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCTAATTTTGATGATATCGCGAAGCAGCTACAAGAGGAACTTAA
CGTTCGTCGTCGCTCTGTTGACCAAAATGACCCCAACCTTCCACCCATGC
CCCCAACCGACGCACCGCCGGAGGACCAACCAATTGAAATAACCATGGGA
AACAATAATATGCCCAAGGTTATCATTCGTCATGCACCAAGTTCGCAACA
AGCCCAAATATACTGCTATGGTGCCGCAGTGACCAGCTGGACAACTCGGG
GAGAGGACCATTTCTGGGTTTCGGATCAGAACAAGTGGCAACTAGGTGGA
AAGGCAATCAGAGGAGGTATTCCCATATGCTTTCCTCAGTTTGGTCCGTA
TGGTGACCTGGTTCAACACGGATTCGCACGTGTTTCTGATTGGCGAATCC
GCAACACGGAGGTGAATGAAGACGGTTCAGTGTCTGCTGTATTTGGCTTG
AGCAGTGAGTCTGGTCAAGATGCAACAGCAGCATGGCCTTATAAGTTTGA
TGCGGAGTACACTGTAACGCTCAGTTTTAGTGGGCTGGAAACAAAGTTAT
CGGTCAGAAACACAGATGACAAACCATTCTCATTTACGTGTGCTTTTCAC
AACTATTTTAAGACAACAACTGTTGAAGATGCTCGCGTGTTTGGATTCGA
GAGCCGAAAGCATCTCAATCGACTAGATGGCGATAAGGAAATGCCAGAAC
AGGAAGACAGCGGTGCAGGAACAATGATTAGTGAAGAAACAGATCGGATT
TATTTGAATGCACCAGAAGAACTTGCAATGTTCGACTTCGCCTCCCTGAA
AGTGCTAAAGATTAAGAAAACCCCTACATTGCCAGACACAACACTTTGGA
ATCCGTTCGGAGCGGAAGGCGCGGACCCAGGATGGAGAAATTTCATATGC
ATCGAACCAGCGTGCGTCACAAACCCAGCCACTGTTGAACCAGGGGAAAC
ATGGGTTGGAGCTCAACTGTTAGGTGTCGAGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1181805..1182788-

>Gchil4167.t1 ID=Gchil4167.t1|Name=Gchil4167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00004373_pilon:1181805..1182788- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCTAATTTTGATGATATCGCGAAGCAGCTACAAGAGGAACTTAA
CGTTCGTCGTCGCTCTGTTGACCAAAATGACCCCAACCTTCCACCCATGC
CCCCAACCGACGCACCGCCGGAGGACCAACCAATTGAAATAACCATGGGA
AACAATAATATGCCCAAGGTTATCATTCGTCATGCACCAAGTTCGCAACA
AGCCCAAATATACTGCTATGGTGCCGCAGTGACCAGCTGGACAACTCGGG
GAGAGGACCATTTCTGGGTTTCGGATCAGAACAAGTGGCAACTAGGTGGA
AAGGCAATCAGAGGAGGTATTCCCATATGCTTTCCTCAGTTTGGTCCGTA
TGGTGACCTGGTTCAACACGGATTCGCACGTGTTTCTGATTGGCGAATCC
GCAACACGGAGGTGAATGAAGACGGTTCAGTGTCTGCTGTATTTGGCTTG
AGCAGTGAGTCTGGTCAAGATGCAACAGCAGCATGGCCTTATAAGTTTGA
TGCGGAGTACACTGTAACGCTCAGTTTTAGTGGGCTGGAAACAAAGTTAT
CGGTCAGAAACACAGATGACAAACCATTCTCATTTACGTGTGCTTTTCAC
AACTATTTTAAGACAACAACTGTTGAAGATGCTCGCGTGTTTGGATTCGA
GAGCCGAAAGCATCTCAATCGACTAGATGGCGATAAGGAAATGCCAGAAC
AGGAAGACAGCGGTGCAGGAACAATGATTAGTGAAGAAACAGATCGGATT
TATTTGAATGCACCAGAAGAACTTGCAATGTTCGACTTCGCCTCCCTGAA
AGTGCTAAAGATTAAGAAAACCCCTACATTGCCAGACACAACACTTTGGA
ATCCGTTCGGAGCGGAAGGCGCGGACCCAGGATGGAGAAATTTCATATGC
ATCGAACCAGCGTGCGTCACAAACCCAGCCACTGTTGAACCAGGGGAAAC
ATGGGTTGGAGCTCAACTGTTAGGTGTCGAGTAA
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