Gchil4161.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4161.t1
Unique NameGchil4161.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1133123..1134097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_90804
Preferred nameHEMC
PFAMsPorphobil_deam,Porphobil_deamC
Max annot lvl2759|Eukaryota
KEGG rclassRC02317
KEGG koko:K01749
KEGG ReactionR00084
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
GOsGO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0071704,GO:0090304,GO:0098542,GO:1900865,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.4e-148
EggNOG OGsCOG0181@1|root,KOG2892@2759|Eukaryota
EC2.5.1.61
Descriptionporphobilinogen deaminase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4161Gchil4161Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1133123..1134097 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4161.t1.start1Gchil4161.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1133123..1133125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4161.t1.CDS1Gchil4161.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1133123..1134097 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4161.t1.exon1Gchil4161.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1133123..1134097 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4161.t1.stop1Gchil4161.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1134095..1134097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4161.t1Gchil4161.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1133123..1134097 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4161.t1 ID=Gchil4161.t1|Name=Gchil4161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=325bp
MNLSEVEAPAGKTSSGGAVIVIGTRGSPLALAQAHETKRRLIEAFPNLAS
DGAIEIRIIHTSGDMILDKALADIGGKGLFTKEIDVAQLKGEIDIAVHSM
KDVPTWLPDGIILPCTLPREDTRDVFISNKAKSIDELPDGSVIGSASLRR
QSQILAKNPTLKVINFRGNVQTRLRKLNEGKVDATLLALAGLSRMNMTEH
ATSIISQEEMLPAVAQGAIGITCRQGDKPMLDFLAPLNHKETKTCVDCER
AFLAKLDGSCRTPIAGQAKIGEDGVLRFRGLVARPDGSEVFETTRSGKPE
DAIAIGTEAGTELKVKMGDDFFAV*
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spliced messenger RNA

>Gchil4161.t1 ID=Gchil4161.t1|Name=Gchil4161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004373_pilon:1133123..1134097+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTGTCCGAGGTTGAGGCCCCAGCTGGGAAAACGAGCTCAGGTGG
AGCCGTCATAGTCATCGGAACACGTGGATCTCCGCTTGCTTTGGCACAGG
CTCACGAAACGAAACGTCGATTGATAGAAGCATTTCCGAATTTGGCTTCG
GATGGCGCAATCGAAATCAGAATTATTCATACTTCTGGCGATATGATTCT
GGACAAGGCCCTAGCAGATATTGGTGGAAAAGGACTGTTCACCAAAGAAA
TCGACGTCGCACAGCTCAAAGGTGAAATTGACATTGCAGTTCATTCAATG
AAGGACGTACCTACCTGGCTCCCAGACGGTATCATTCTTCCTTGCACGCT
GCCACGTGAGGATACGCGTGACGTCTTCATTTCAAACAAAGCGAAGTCCA
TTGACGAACTTCCTGATGGCAGCGTAATTGGGTCTGCGTCATTGCGACGC
CAGTCCCAGATTTTGGCGAAGAATCCTACTCTCAAGGTAATCAACTTCCG
TGGCAACGTACAAACAAGACTTAGAAAGCTGAATGAGGGCAAGGTAGATG
CCACGTTACTTGCTCTGGCAGGCCTTTCTCGTATGAATATGACCGAGCAT
GCCACTTCGATAATATCACAGGAAGAAATGCTGCCAGCTGTTGCACAGGG
CGCTATTGGCATTACATGCAGACAAGGTGACAAACCAATGCTTGACTTCC
TTGCCCCCCTGAATCACAAGGAAACCAAGACGTGCGTCGATTGTGAGCGA
GCGTTCTTGGCGAAGTTGGACGGTTCTTGCCGAACTCCCATTGCTGGCCA
AGCAAAGATTGGCGAGGACGGTGTTCTGCGGTTCCGAGGTTTAGTTGCAA
GACCGGATGGTTCAGAAGTGTTTGAAACGACTCGTTCAGGAAAACCAGAA
GACGCCATTGCAATAGGGACCGAAGCTGGGACAGAGCTTAAGGTGAAAAT
GGGCGATGACTTTTTTGCTGTTTGA
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protein sequence of Gchil4161.t1

>Gchil4161.t1 ID=Gchil4161.t1|Name=Gchil4161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MNLSEVEAPAGKTSSGGAVIVIGTRGSPLALAQAHETKRRLIEAFPNLAS
DGAIEIRIIHTSGDMILDKALADIGGKGLFTKEIDVAQLKGEIDIAVHSM
KDVPTWLPDGIILPCTLPREDTRDVFISNKAKSIDELPDGSVIGSASLRR
QSQILAKNPTLKVINFRGNVQTRLRKLNEGKVDATLLALAGLSRMNMTEH
ATSIISQEEMLPAVAQGAIGITCRQGDKPMLDFLAPLNHKETKTCVDCER
AFLAKLDGSCRTPIAGQAKIGEDGVLRFRGLVARPDGSEVFETTRSGKPE
DAIAIGTEAGTELKVKMGDDFFAV*
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mRNA from alignment at tig00004373_pilon:1133123..1134097+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4161.t1 ID=Gchil4161.t1|Name=Gchil4161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004373_pilon:1133123..1134097+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTGTCCGAGGTTGAGGCCCCAGCTGGGAAAACGAGCTCAGGTGG
AGCCGTCATAGTCATCGGAACACGTGGATCTCCGCTTGCTTTGGCACAGG
CTCACGAAACGAAACGTCGATTGATAGAAGCATTTCCGAATTTGGCTTCG
GATGGCGCAATCGAAATCAGAATTATTCATACTTCTGGCGATATGATTCT
GGACAAGGCCCTAGCAGATATTGGTGGAAAAGGACTGTTCACCAAAGAAA
TCGACGTCGCACAGCTCAAAGGTGAAATTGACATTGCAGTTCATTCAATG
AAGGACGTACCTACCTGGCTCCCAGACGGTATCATTCTTCCTTGCACGCT
GCCACGTGAGGATACGCGTGACGTCTTCATTTCAAACAAAGCGAAGTCCA
TTGACGAACTTCCTGATGGCAGCGTAATTGGGTCTGCGTCATTGCGACGC
CAGTCCCAGATTTTGGCGAAGAATCCTACTCTCAAGGTAATCAACTTCCG
TGGCAACGTACAAACAAGACTTAGAAAGCTGAATGAGGGCAAGGTAGATG
CCACGTTACTTGCTCTGGCAGGCCTTTCTCGTATGAATATGACCGAGCAT
GCCACTTCGATAATATCACAGGAAGAAATGCTGCCAGCTGTTGCACAGGG
CGCTATTGGCATTACATGCAGACAAGGTGACAAACCAATGCTTGACTTCC
TTGCCCCCCTGAATCACAAGGAAACCAAGACGTGCGTCGATTGTGAGCGA
GCGTTCTTGGCGAAGTTGGACGGTTCTTGCCGAACTCCCATTGCTGGCCA
AGCAAAGATTGGCGAGGACGGTGTTCTGCGGTTCCGAGGTTTAGTTGCAA
GACCGGATGGTTCAGAAGTGTTTGAAACGACTCGTTCAGGAAAACCAGAA
GACGCCATTGCAATAGGGACCGAAGCTGGGACAGAGCTTAAGGTGAAAAT
GGGCGATGACTTTTTTGCTGTTTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1133123..1134097+

>Gchil4161.t1 ID=Gchil4161.t1|Name=Gchil4161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00004373_pilon:1133123..1134097+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTGTCCGAGGTTGAGGCCCCAGCTGGGAAAACGAGCTCAGGTGG
AGCCGTCATAGTCATCGGAACACGTGGATCTCCGCTTGCTTTGGCACAGG
CTCACGAAACGAAACGTCGATTGATAGAAGCATTTCCGAATTTGGCTTCG
GATGGCGCAATCGAAATCAGAATTATTCATACTTCTGGCGATATGATTCT
GGACAAGGCCCTAGCAGATATTGGTGGAAAAGGACTGTTCACCAAAGAAA
TCGACGTCGCACAGCTCAAAGGTGAAATTGACATTGCAGTTCATTCAATG
AAGGACGTACCTACCTGGCTCCCAGACGGTATCATTCTTCCTTGCACGCT
GCCACGTGAGGATACGCGTGACGTCTTCATTTCAAACAAAGCGAAGTCCA
TTGACGAACTTCCTGATGGCAGCGTAATTGGGTCTGCGTCATTGCGACGC
CAGTCCCAGATTTTGGCGAAGAATCCTACTCTCAAGGTAATCAACTTCCG
TGGCAACGTACAAACAAGACTTAGAAAGCTGAATGAGGGCAAGGTAGATG
CCACGTTACTTGCTCTGGCAGGCCTTTCTCGTATGAATATGACCGAGCAT
GCCACTTCGATAATATCACAGGAAGAAATGCTGCCAGCTGTTGCACAGGG
CGCTATTGGCATTACATGCAGACAAGGTGACAAACCAATGCTTGACTTCC
TTGCCCCCCTGAATCACAAGGAAACCAAGACGTGCGTCGATTGTGAGCGA
GCGTTCTTGGCGAAGTTGGACGGTTCTTGCCGAACTCCCATTGCTGGCCA
AGCAAAGATTGGCGAGGACGGTGTTCTGCGGTTCCGAGGTTTAGTTGCAA
GACCGGATGGTTCAGAAGTGTTTGAAACGACTCGTTCAGGAAAACCAGAA
GACGCCATTGCAATAGGGACCGAAGCTGGGACAGAGCTTAAGGTGAAAAT
GGGCGATGACTTTTTTGCTGTTTGA
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