Gchil4156.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4156.t1
Unique NameGchil4156.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length612
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1052664..1054499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4156Gchil4156Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1052664..1054499 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4156.t1.stop1Gchil4156.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1052664..1052666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4156.t1.CDS1Gchil4156.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1052664..1054499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4156.t1.exon1Gchil4156.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1052664..1054499 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4156.t1.start1Gchil4156.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1054497..1054499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4156.t1Gchil4156.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1052664..1054499 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4156.t1 ID=Gchil4156.t1|Name=Gchil4156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=612bp
MSYTTRTQPTSTSEEEWLENIRCPTFFDFEAAVSYPCTLGDDNPPLRESV
YDSDDETRAFFCSLNKNPSLHPTLHRRSLSPHRNRLQNAGKPLYRHRPKT
SFADYLAEFQNREAHQANKTIQNAAALSSESESSPARNLTPQSNISTPDL
TPSPQDAVRDIHSDAWATQVPKTAKVVPLRRPRRSLTSSHMRIERVDPKV
NQEQSRFQAQNPARRKPRPPERNIPKASGSRIVRNDRRVKSMVAPPKEAT
KPDFDGNISGICSDINSVSIEIDGRNLKLSPTTQSDISNSPTDLEIRATE
NDACAVDRDFVKIMEEHNERLRKSKSGRAGSSISARTESEKAFRSKSLKD
AASVAPALDSVRVTDSEKGADRTERTSLTDGGGPGSALEIVNNPEVQSKN
PSDLRRISLSQLLKMENEKVLEERKRRLPERRKALQQHRMNALRNFGVST
TEGRLIKPISTHIEFTSAETRKTIRGENNVKGINNDRRAKEQNQFVGTQN
ERNKERGLRGYRSRKGGNQATKLSGAFNTARNRQTGGTTGKAELPGVPTQ
NLQSRMDLFDSNSGDSNIQRDEVPPQTLALKKEVSDDLKLLLTEHNNRIR
RNRAPVGTINN*
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spliced messenger RNA

>Gchil4156.t1 ID=Gchil4156.t1|Name=Gchil4156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00004373_pilon:1052664..1054499- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACACAACTAGGACCCAACCAACTTCTACTTCCGAAGAAGAATG
GCTCGAGAACATACGATGTCCAACGTTCTTCGACTTCGAAGCAGCCGTGT
CATATCCATGTACCCTCGGAGATGACAATCCACCGTTACGAGAATCCGTA
TACGATAGTGATGACGAGACTCGAGCATTCTTCTGTTCCCTGAACAAAAA
CCCTTCATTACATCCAACCTTGCACAGGAGATCTTTGTCTCCGCATCGAA
ATAGGCTGCAGAATGCAGGAAAACCTCTCTATCGCCATCGTCCAAAAACG
TCCTTCGCAGATTACCTTGCGGAATTCCAAAACAGGGAAGCACACCAAGC
CAATAAGACTATTCAAAATGCCGCGGCATTATCATCCGAATCCGAATCCT
CTCCGGCTCGGAACCTCACACCCCAATCAAACATATCGACCCCAGATCTC
ACGCCATCGCCACAAGACGCTGTTCGTGATATCCATAGCGACGCATGGGC
CACGCAGGTGCCTAAGACTGCAAAGGTGGTACCACTGAGGCGACCACGGC
GTTCTCTGACCTCATCACATATGAGGATAGAAAGAGTGGATCCAAAGGTT
AATCAAGAACAGTCTCGATTCCAAGCACAGAATCCTGCGCGGCGGAAACC
TCGTCCTCCCGAAAGAAATATACCAAAAGCTTCTGGGTCAAGAATTGTCA
GAAACGACCGCAGGGTGAAATCAATGGTTGCACCTCCCAAAGAAGCTACG
AAACCTGACTTCGACGGCAATATTAGTGGAATTTGTTCTGATATCAATTC
AGTTTCTATTGAAATCGACGGCAGAAATTTGAAGTTAAGCCCAACGACAC
AATCAGACATTTCCAATTCTCCAACCGATCTTGAAATAAGAGCAACAGAA
AATGACGCATGTGCCGTTGATCGAGACTTTGTCAAGATAATGGAAGAGCA
CAACGAGAGACTGCGGAAAAGTAAAAGCGGGAGAGCGGGGAGCAGTATCT
CAGCACGCACAGAGAGCGAAAAGGCATTCAGGAGCAAATCGCTTAAAGAC
GCAGCTTCCGTCGCACCTGCGCTGGATTCTGTGAGAGTTACCGATTCTGA
GAAAGGTGCTGACCGCACAGAACGGACAAGCCTCACTGACGGTGGTGGTC
CAGGATCTGCGCTCGAAATCGTCAATAACCCTGAAGTTCAGTCCAAAAAC
CCATCCGATCTTAGGCGTATATCGCTCTCGCAGTTGCTTAAAATGGAGAA
TGAGAAGGTTTTAGAAGAACGTAAGAGACGGCTCCCGGAAAGACGGAAAG
CTCTTCAGCAACACCGAATGAATGCATTACGAAATTTCGGAGTGAGTACT
ACGGAGGGCCGACTCATCAAGCCAATTTCTACTCATATTGAGTTCACTTC
AGCTGAGACCAGGAAAACTATACGTGGAGAAAACAATGTCAAAGGCATTA
ATAATGATCGCAGAGCGAAAGAACAGAATCAGTTTGTGGGAACACAAAAT
GAGAGGAATAAAGAGCGAGGCTTACGAGGTTATCGTTCCCGAAAGGGCGG
AAACCAGGCTACTAAGTTGTCCGGTGCATTTAATACCGCAAGAAATCGAC
AAACGGGTGGCACTACGGGTAAAGCCGAACTCCCTGGGGTACCTACTCAA
AACTTGCAGTCGCGAATGGATTTGTTTGACTCAAATAGCGGTGATTCCAA
TATTCAACGTGATGAAGTGCCGCCGCAAACATTGGCTCTCAAGAAAGAAG
TGTCGGATGATCTAAAGCTCCTTCTTACCGAGCATAACAACAGGATTCGA
AGAAACAGAGCTCCCGTGGGCACAATAAACAACTGA
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protein sequence of Gchil4156.t1

>Gchil4156.t1 ID=Gchil4156.t1|Name=Gchil4156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=612bp
MSYTTRTQPTSTSEEEWLENIRCPTFFDFEAAVSYPCTLGDDNPPLRESV
YDSDDETRAFFCSLNKNPSLHPTLHRRSLSPHRNRLQNAGKPLYRHRPKT
SFADYLAEFQNREAHQANKTIQNAAALSSESESSPARNLTPQSNISTPDL
TPSPQDAVRDIHSDAWATQVPKTAKVVPLRRPRRSLTSSHMRIERVDPKV
NQEQSRFQAQNPARRKPRPPERNIPKASGSRIVRNDRRVKSMVAPPKEAT
KPDFDGNISGICSDINSVSIEIDGRNLKLSPTTQSDISNSPTDLEIRATE
NDACAVDRDFVKIMEEHNERLRKSKSGRAGSSISARTESEKAFRSKSLKD
AASVAPALDSVRVTDSEKGADRTERTSLTDGGGPGSALEIVNNPEVQSKN
PSDLRRISLSQLLKMENEKVLEERKRRLPERRKALQQHRMNALRNFGVST
TEGRLIKPISTHIEFTSAETRKTIRGENNVKGINNDRRAKEQNQFVGTQN
ERNKERGLRGYRSRKGGNQATKLSGAFNTARNRQTGGTTGKAELPGVPTQ
NLQSRMDLFDSNSGDSNIQRDEVPPQTLALKKEVSDDLKLLLTEHNNRIR
RNRAPVGTINN*
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mRNA from alignment at tig00004373_pilon:1052664..1054499-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4156.t1 ID=Gchil4156.t1|Name=Gchil4156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00004373_pilon:1052664..1054499- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTACACAACTAGGACCCAACCAACTTCTACTTCCGAAGAAGAATG
GCTCGAGAACATACGATGTCCAACGTTCTTCGACTTCGAAGCAGCCGTGT
CATATCCATGTACCCTCGGAGATGACAATCCACCGTTACGAGAATCCGTA
TACGATAGTGATGACGAGACTCGAGCATTCTTCTGTTCCCTGAACAAAAA
CCCTTCATTACATCCAACCTTGCACAGGAGATCTTTGTCTCCGCATCGAA
ATAGGCTGCAGAATGCAGGAAAACCTCTCTATCGCCATCGTCCAAAAACG
TCCTTCGCAGATTACCTTGCGGAATTCCAAAACAGGGAAGCACACCAAGC
CAATAAGACTATTCAAAATGCCGCGGCATTATCATCCGAATCCGAATCCT
CTCCGGCTCGGAACCTCACACCCCAATCAAACATATCGACCCCAGATCTC
ACGCCATCGCCACAAGACGCTGTTCGTGATATCCATAGCGACGCATGGGC
CACGCAGGTGCCTAAGACTGCAAAGGTGGTACCACTGAGGCGACCACGGC
GTTCTCTGACCTCATCACATATGAGGATAGAAAGAGTGGATCCAAAGGTT
AATCAAGAACAGTCTCGATTCCAAGCACAGAATCCTGCGCGGCGGAAACC
TCGTCCTCCCGAAAGAAATATACCAAAAGCTTCTGGGTCAAGAATTGTCA
GAAACGACCGCAGGGTGAAATCAATGGTTGCACCTCCCAAAGAAGCTACG
AAACCTGACTTCGACGGCAATATTAGTGGAATTTGTTCTGATATCAATTC
AGTTTCTATTGAAATCGACGGCAGAAATTTGAAGTTAAGCCCAACGACAC
AATCAGACATTTCCAATTCTCCAACCGATCTTGAAATAAGAGCAACAGAA
AATGACGCATGTGCCGTTGATCGAGACTTTGTCAAGATAATGGAAGAGCA
CAACGAGAGACTGCGGAAAAGTAAAAGCGGGAGAGCGGGGAGCAGTATCT
CAGCACGCACAGAGAGCGAAAAGGCATTCAGGAGCAAATCGCTTAAAGAC
GCAGCTTCCGTCGCACCTGCGCTGGATTCTGTGAGAGTTACCGATTCTGA
GAAAGGTGCTGACCGCACAGAACGGACAAGCCTCACTGACGGTGGTGGTC
CAGGATCTGCGCTCGAAATCGTCAATAACCCTGAAGTTCAGTCCAAAAAC
CCATCCGATCTTAGGCGTATATCGCTCTCGCAGTTGCTTAAAATGGAGAA
TGAGAAGGTTTTAGAAGAACGTAAGAGACGGCTCCCGGAAAGACGGAAAG
CTCTTCAGCAACACCGAATGAATGCATTACGAAATTTCGGAGTGAGTACT
ACGGAGGGCCGACTCATCAAGCCAATTTCTACTCATATTGAGTTCACTTC
AGCTGAGACCAGGAAAACTATACGTGGAGAAAACAATGTCAAAGGCATTA
ATAATGATCGCAGAGCGAAAGAACAGAATCAGTTTGTGGGAACACAAAAT
GAGAGGAATAAAGAGCGAGGCTTACGAGGTTATCGTTCCCGAAAGGGCGG
AAACCAGGCTACTAAGTTGTCCGGTGCATTTAATACCGCAAGAAATCGAC
AAACGGGTGGCACTACGGGTAAAGCCGAACTCCCTGGGGTACCTACTCAA
AACTTGCAGTCGCGAATGGATTTGTTTGACTCAAATAGCGGTGATTCCAA
TATTCAACGTGATGAAGTGCCGCCGCAAACATTGGCTCTCAAGAAAGAAG
TGTCGGATGATCTAAAGCTCCTTCTTACCGAGCATAACAACAGGATTCGA
AGAAACAGAGCTCCCGTGGGCACAATAAACAACTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1052664..1054499-

>Gchil4156.t1 ID=Gchil4156.t1|Name=Gchil4156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1836bp|location=Sequence derived from alignment at tig00004373_pilon:1052664..1054499- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTACACAACTAGGACCCAACCAACTTCTACTTCCGAAGAAGAATG
GCTCGAGAACATACGATGTCCAACGTTCTTCGACTTCGAAGCAGCCGTGT
CATATCCATGTACCCTCGGAGATGACAATCCACCGTTACGAGAATCCGTA
TACGATAGTGATGACGAGACTCGAGCATTCTTCTGTTCCCTGAACAAAAA
CCCTTCATTACATCCAACCTTGCACAGGAGATCTTTGTCTCCGCATCGAA
ATAGGCTGCAGAATGCAGGAAAACCTCTCTATCGCCATCGTCCAAAAACG
TCCTTCGCAGATTACCTTGCGGAATTCCAAAACAGGGAAGCACACCAAGC
CAATAAGACTATTCAAAATGCCGCGGCATTATCATCCGAATCCGAATCCT
CTCCGGCTCGGAACCTCACACCCCAATCAAACATATCGACCCCAGATCTC
ACGCCATCGCCACAAGACGCTGTTCGTGATATCCATAGCGACGCATGGGC
CACGCAGGTGCCTAAGACTGCAAAGGTGGTACCACTGAGGCGACCACGGC
GTTCTCTGACCTCATCACATATGAGGATAGAAAGAGTGGATCCAAAGGTT
AATCAAGAACAGTCTCGATTCCAAGCACAGAATCCTGCGCGGCGGAAACC
TCGTCCTCCCGAAAGAAATATACCAAAAGCTTCTGGGTCAAGAATTGTCA
GAAACGACCGCAGGGTGAAATCAATGGTTGCACCTCCCAAAGAAGCTACG
AAACCTGACTTCGACGGCAATATTAGTGGAATTTGTTCTGATATCAATTC
AGTTTCTATTGAAATCGACGGCAGAAATTTGAAGTTAAGCCCAACGACAC
AATCAGACATTTCCAATTCTCCAACCGATCTTGAAATAAGAGCAACAGAA
AATGACGCATGTGCCGTTGATCGAGACTTTGTCAAGATAATGGAAGAGCA
CAACGAGAGACTGCGGAAAAGTAAAAGCGGGAGAGCGGGGAGCAGTATCT
CAGCACGCACAGAGAGCGAAAAGGCATTCAGGAGCAAATCGCTTAAAGAC
GCAGCTTCCGTCGCACCTGCGCTGGATTCTGTGAGAGTTACCGATTCTGA
GAAAGGTGCTGACCGCACAGAACGGACAAGCCTCACTGACGGTGGTGGTC
CAGGATCTGCGCTCGAAATCGTCAATAACCCTGAAGTTCAGTCCAAAAAC
CCATCCGATCTTAGGCGTATATCGCTCTCGCAGTTGCTTAAAATGGAGAA
TGAGAAGGTTTTAGAAGAACGTAAGAGACGGCTCCCGGAAAGACGGAAAG
CTCTTCAGCAACACCGAATGAATGCATTACGAAATTTCGGAGTGAGTACT
ACGGAGGGCCGACTCATCAAGCCAATTTCTACTCATATTGAGTTCACTTC
AGCTGAGACCAGGAAAACTATACGTGGAGAAAACAATGTCAAAGGCATTA
ATAATGATCGCAGAGCGAAAGAACAGAATCAGTTTGTGGGAACACAAAAT
GAGAGGAATAAAGAGCGAGGCTTACGAGGTTATCGTTCCCGAAAGGGCGG
AAACCAGGCTACTAAGTTGTCCGGTGCATTTAATACCGCAAGAAATCGAC
AAACGGGTGGCACTACGGGTAAAGCCGAACTCCCTGGGGTACCTACTCAA
AACTTGCAGTCGCGAATGGATTTGTTTGACTCAAATAGCGGTGATTCCAA
TATTCAACGTGATGAAGTGCCGCCGCAAACATTGGCTCTCAAGAAAGAAG
TGTCGGATGATCTAAAGCTCCTTCTTACCGAGCATAACAACAGGATTCGA
AGAAACAGAGCTCCCGTGGGCACAATAAACAACTGA
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