Gchil4155.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4155.t1
Unique Name	Gchil4155.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1051568..1052518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	99158.XP_008884341.1
PFAMs	OTU
Max annot lvl	5794\|Apicomplexa
KEGG ko	ko:K18342
Evalue	9.34e-34
EggNOG OGs	COG5539@1\|root,KOG2606@2759\|Eukaryota,3YAQC@5794\|Apicomplexa,3YMJ7@5796\|Coccidia,3YTKZ@5809\|Sarcocystidae
EC	3.4.19.12
Description	OTU-like cysteine protease
COG category	OT
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4155	Gchil4155	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1051568..1052518 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4155.t1.start1	Gchil4155.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1051568..1051570 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4155.t1.CDS1	Gchil4155.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1051568..1052518 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4155.t1.exon1	Gchil4155.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1051568..1052518 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4155.t1.stop1	Gchil4155.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1052516..1052518 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4155.t1	Gchil4155.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1051568..1052518 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1051568..1052518+
coding sequence from alignment at tig00004373_pilon:1051568..1052518+

mRNA sequence

>Gchil4155.t1 ID=Gchil4155.t1|Name=Gchil4155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=317bp
MPLTDREPAQCNRNIVVMATEDEKDEISLPSVNPSRVKQRQAEEIADFKK
KSERLLSSIPKKHRIERARALEEISSEEQRLLARLTAELEELGITSTEDG
LEASISPTGSCSNQGSGNLEPNRESKAARRRRKKAEKEAEIQRRIVEEKR
TMGPTPKQLEMGAINAQLTSQNLRIHPIPADGHCLYSAVAHQMKTVKTPS
KVPASVEGLREATANFILEHKTEYAPFIDEAGGDEERLFQYCEQLRNEAV
WGGQVELKALAELLGTAIEVYAADMPLVRMGSNVNNDSKVIRVSFHQKYY
GLGEHYNSVVPQSSTS*

spliced messenger RNA

>Gchil4155.t1 ID=Gchil4155.t1|Name=Gchil4155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00004373_pilon:1051568..1052518+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGACGGACCGAGAACCTGCTCAATGTAATAGAAACATCGTGGT
TATGGCAACTGAAGACGAAAAAGACGAAATATCTCTACCTTCGGTTAACC
CATCAAGGGTGAAGCAAAGACAAGCAGAAGAAATTGCAGATTTCAAAAAG
AAATCTGAACGTCTTCTTTCTTCTATCCCAAAAAAACATCGTATCGAACG
AGCTCGTGCACTAGAAGAAATATCTTCTGAAGAACAAAGGCTTCTTGCAA
GACTGACCGCAGAGCTGGAGGAACTTGGTATTACATCAACAGAAGATGGA
TTAGAAGCCTCAATCTCTCCAACTGGCTCCTGCAGCAATCAAGGTAGTGG
GAACTTAGAACCGAATAGAGAGTCAAAAGCAGCGCGAAGACGGCGAAAAA
AAGCGGAGAAGGAGGCCGAAATTCAGCGCCGTATTGTCGAAGAAAAGAGA
ACTATGGGGCCAACCCCTAAACAGCTTGAGATGGGGGCTATCAACGCCCA
ACTCACGAGTCAGAATCTTCGCATTCACCCAATACCCGCAGATGGTCATT
GTCTGTACAGCGCTGTAGCACATCAAATGAAAACTGTAAAGACCCCTTCA
AAAGTTCCGGCTTCTGTGGAGGGTCTAAGGGAGGCCACGGCGAATTTCAT
CTTAGAACACAAGACAGAATATGCCCCTTTCATAGATGAGGCTGGCGGTG
ATGAAGAAAGACTATTTCAGTATTGTGAACAACTACGAAATGAGGCTGTG
TGGGGTGGCCAAGTCGAGTTGAAGGCATTGGCCGAGCTCCTGGGTACCGC
CATAGAAGTTTATGCGGCTGACATGCCACTCGTTAGAATGGGCAGCAATG
TCAACAATGACAGCAAAGTTATCAGGGTCTCCTTTCATCAAAAGTACTAC
GGTTTAGGTGAGCACTACAATAGCGTTGTGCCACAATCATCAACATCCTG
A

protein sequence of Gchil4155.t1

>Gchil4155.t1 ID=Gchil4155.t1|Name=Gchil4155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MPLTDREPAQCNRNIVVMATEDEKDEISLPSVNPSRVKQRQAEEIADFKK
KSERLLSSIPKKHRIERARALEEISSEEQRLLARLTAELEELGITSTEDG
LEASISPTGSCSNQGSGNLEPNRESKAARRRRKKAEKEAEIQRRIVEEKR
TMGPTPKQLEMGAINAQLTSQNLRIHPIPADGHCLYSAVAHQMKTVKTPS
KVPASVEGLREATANFILEHKTEYAPFIDEAGGDEERLFQYCEQLRNEAV
WGGQVELKALAELLGTAIEVYAADMPLVRMGSNVNNDSKVIRVSFHQKYY
GLGEHYNSVVPQSSTS*

mRNA from alignment at tig00004373_pilon:1051568..1052518+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4155.t1 ID=Gchil4155.t1|Name=Gchil4155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00004373_pilon:1051568..1052518+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCTGACGGACCGAGAACCTGCTCAATGTAATAGAAACATCGTGGT
TATGGCAACTGAAGACGAAAAAGACGAAATATCTCTACCTTCGGTTAACC
CATCAAGGGTGAAGCAAAGACAAGCAGAAGAAATTGCAGATTTCAAAAAG
AAATCTGAACGTCTTCTTTCTTCTATCCCAAAAAAACATCGTATCGAACG
AGCTCGTGCACTAGAAGAAATATCTTCTGAAGAACAAAGGCTTCTTGCAA
GACTGACCGCAGAGCTGGAGGAACTTGGTATTACATCAACAGAAGATGGA
TTAGAAGCCTCAATCTCTCCAACTGGCTCCTGCAGCAATCAAGGTAGTGG
GAACTTAGAACCGAATAGAGAGTCAAAAGCAGCGCGAAGACGGCGAAAAA
AAGCGGAGAAGGAGGCCGAAATTCAGCGCCGTATTGTCGAAGAAAAGAGA
ACTATGGGGCCAACCCCTAAACAGCTTGAGATGGGGGCTATCAACGCCCA
ACTCACGAGTCAGAATCTTCGCATTCACCCAATACCCGCAGATGGTCATT
GTCTGTACAGCGCTGTAGCACATCAAATGAAAACTGTAAAGACCCCTTCA
AAAGTTCCGGCTTCTGTGGAGGGTCTAAGGGAGGCCACGGCGAATTTCAT
CTTAGAACACAAGACAGAATATGCCCCTTTCATAGATGAGGCTGGCGGTG
ATGAAGAAAGACTATTTCAGTATTGTGAACAACTACGAAATGAGGCTGTG
TGGGGTGGCCAAGTCGAGTTGAAGGCATTGGCCGAGCTCCTGGGTACCGC
CATAGAAGTTTATGCGGCTGACATGCCACTCGTTAGAATGGGCAGCAATG
TCAACAATGACAGCAAAGTTATCAGGGTCTCCTTTCATCAAAAGTACTAC
GGTTTAGGTGAGCACTACAATAGCGTTGTGCCACAATCATCAACATCCTG
A

Coding sequence (CDS) from alignment at tig00004373_pilon:1051568..1052518+

>Gchil4155.t1 ID=Gchil4155.t1|Name=Gchil4155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00004373_pilon:1051568..1052518+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCTGACGGACCGAGAACCTGCTCAATGTAATAGAAACATCGTGGT
TATGGCAACTGAAGACGAAAAAGACGAAATATCTCTACCTTCGGTTAACC
CATCAAGGGTGAAGCAAAGACAAGCAGAAGAAATTGCAGATTTCAAAAAG
AAATCTGAACGTCTTCTTTCTTCTATCCCAAAAAAACATCGTATCGAACG
AGCTCGTGCACTAGAAGAAATATCTTCTGAAGAACAAAGGCTTCTTGCAA
GACTGACCGCAGAGCTGGAGGAACTTGGTATTACATCAACAGAAGATGGA
TTAGAAGCCTCAATCTCTCCAACTGGCTCCTGCAGCAATCAAGGTAGTGG
GAACTTAGAACCGAATAGAGAGTCAAAAGCAGCGCGAAGACGGCGAAAAA
AAGCGGAGAAGGAGGCCGAAATTCAGCGCCGTATTGTCGAAGAAAAGAGA
ACTATGGGGCCAACCCCTAAACAGCTTGAGATGGGGGCTATCAACGCCCA
ACTCACGAGTCAGAATCTTCGCATTCACCCAATACCCGCAGATGGTCATT
GTCTGTACAGCGCTGTAGCACATCAAATGAAAACTGTAAAGACCCCTTCA
AAAGTTCCGGCTTCTGTGGAGGGTCTAAGGGAGGCCACGGCGAATTTCAT
CTTAGAACACAAGACAGAATATGCCCCTTTCATAGATGAGGCTGGCGGTG
ATGAAGAAAGACTATTTCAGTATTGTGAACAACTACGAAATGAGGCTGTG
TGGGGTGGCCAAGTCGAGTTGAAGGCATTGGCCGAGCTCCTGGGTACCGC
CATAGAAGTTTATGCGGCTGACATGCCACTCGTTAGAATGGGCAGCAATG
TCAACAATGACAGCAAAGTTATCAGGGTCTCCTTTCATCAAAAGTACTAC
GGTTTAGGTGAGCACTACAATAGCGTTGTGCCACAATCATCAACATCCTG
A