Gchil4149.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4149.t1
Unique Name	Gchil4149.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1036206..1037153 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	526225.Gobs_4965
PFAMs	SGL
Max annot lvl	201174\|Actinobacteria
Evalue	4.32e-20
EggNOG OGs	COG3386@1\|root,COG3386@2\|Bacteria,2HDRT@201174\|Actinobacteria
Description	PFAM SMP-30 Gluconolaconase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4149	Gchil4149	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1036206..1037153 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4149.t1.start1	Gchil4149.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1036206..1036208 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4149.t1.CDS1	Gchil4149.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1036206..1037153 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4149.t1.exon1	Gchil4149.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1036206..1037153 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4149.t1.stop1	Gchil4149.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1037151..1037153 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4149.t1	Gchil4149.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1036206..1037153 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1036206..1037153+
coding sequence from alignment at tig00004373_pilon:1036206..1037153+

mRNA sequence

>Gchil4149.t1 ID=Gchil4149.t1|Name=Gchil4149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=316bp
MHATLAVFILSLFYVGLSHRIRLPPNTQVEGVAHVAGSLFFAGDFRRGAI
LLIDFATGFTTTVVPANANRLATGLTARNGSVFVAGGGIFGVFTSPPRMF
VYDILSGNTVAACDAPLGALVNDVTADDDFAYYTDSFLGKVYMLRLATLP
QCDLSVLSLPPQLFAPGPPFLTTNGIRRFASGLVVANSNLGSLFFVDLST
NSTQQITPNDAVVGAGGLELSQDKNGSGATLFVAQSTLSIVSIWRLWKTG
KDVKARFVQNITYPEFETPGTVALGDGRLVVGDPKFETYTLTNDLPDGAE
LALFGFRIRRARHSK*

spliced messenger RNA

>Gchil4149.t1 ID=Gchil4149.t1|Name=Gchil4149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00004373_pilon:1036206..1037153+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCTACTCTTGCAGTGTTCATCCTCTCACTTTTCTATGTAGGCCT
CTCACATAGAATTCGACTGCCGCCAAACACTCAAGTTGAAGGCGTCGCGC
ATGTGGCTGGCTCACTTTTCTTCGCCGGTGATTTTCGCCGAGGTGCCATC
TTGCTCATTGATTTCGCAACAGGTTTTACAACAACAGTAGTACCCGCCAA
TGCCAACCGCCTGGCCACGGGTCTTACCGCACGAAATGGCAGTGTTTTCG
TTGCTGGTGGAGGCATATTCGGTGTTTTTACAAGTCCACCTCGCATGTTC
GTTTACGACATTTTATCTGGCAATACTGTTGCAGCGTGTGATGCTCCATT
AGGAGCGCTTGTGAATGATGTGACTGCAGATGACGACTTTGCTTACTATA
CGGACTCTTTTCTAGGTAAAGTATATATGCTGCGGCTAGCAACACTCCCT
CAATGTGACTTAAGCGTACTTTCCTTACCCCCCCAGTTGTTTGCTCCTGG
ACCCCCGTTTCTCACTACAAATGGTATAAGGCGATTTGCATCCGGCTTGG
TGGTCGCAAACTCCAACTTGGGAAGCTTGTTTTTCGTTGATCTTTCCACC
AATTCCACTCAACAAATTACACCAAATGATGCTGTTGTAGGTGCAGGCGG
TCTAGAGTTATCCCAAGATAAGAACGGGAGCGGGGCTACCCTGTTCGTTG
CGCAAAGCACTTTGAGCATTGTTTCAATTTGGCGCTTGTGGAAGACGGGG
AAAGATGTGAAAGCGCGCTTCGTGCAAAACATCACATACCCGGAATTCGA
AACACCGGGGACGGTAGCACTCGGTGATGGTAGATTAGTTGTGGGTGATC
CCAAGTTCGAGACATATACGCTCACCAATGATTTACCTGATGGTGCAGAG
CTTGCGTTGTTCGGATTCCGTATCCGTAGAGCGCGTCATTCGAAATGA

protein sequence of Gchil4149.t1

>Gchil4149.t1 ID=Gchil4149.t1|Name=Gchil4149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=316bp
MHATLAVFILSLFYVGLSHRIRLPPNTQVEGVAHVAGSLFFAGDFRRGAI
LLIDFATGFTTTVVPANANRLATGLTARNGSVFVAGGGIFGVFTSPPRMF
VYDILSGNTVAACDAPLGALVNDVTADDDFAYYTDSFLGKVYMLRLATLP
QCDLSVLSLPPQLFAPGPPFLTTNGIRRFASGLVVANSNLGSLFFVDLST
NSTQQITPNDAVVGAGGLELSQDKNGSGATLFVAQSTLSIVSIWRLWKTG
KDVKARFVQNITYPEFETPGTVALGDGRLVVGDPKFETYTLTNDLPDGAE
LALFGFRIRRARHSK*

mRNA from alignment at tig00004373_pilon:1036206..1037153+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4149.t1 ID=Gchil4149.t1|Name=Gchil4149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00004373_pilon:1036206..1037153+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATGCTACTCTTGCAGTGTTCATCCTCTCACTTTTCTATGTAGGCCT
CTCACATAGAATTCGACTGCCGCCAAACACTCAAGTTGAAGGCGTCGCGC
ATGTGGCTGGCTCACTTTTCTTCGCCGGTGATTTTCGCCGAGGTGCCATC
TTGCTCATTGATTTCGCAACAGGTTTTACAACAACAGTAGTACCCGCCAA
TGCCAACCGCCTGGCCACGGGTCTTACCGCACGAAATGGCAGTGTTTTCG
TTGCTGGTGGAGGCATATTCGGTGTTTTTACAAGTCCACCTCGCATGTTC
GTTTACGACATTTTATCTGGCAATACTGTTGCAGCGTGTGATGCTCCATT
AGGAGCGCTTGTGAATGATGTGACTGCAGATGACGACTTTGCTTACTATA
CGGACTCTTTTCTAGGTAAAGTATATATGCTGCGGCTAGCAACACTCCCT
CAATGTGACTTAAGCGTACTTTCCTTACCCCCCCAGTTGTTTGCTCCTGG
ACCCCCGTTTCTCACTACAAATGGTATAAGGCGATTTGCATCCGGCTTGG
TGGTCGCAAACTCCAACTTGGGAAGCTTGTTTTTCGTTGATCTTTCCACC
AATTCCACTCAACAAATTACACCAAATGATGCTGTTGTAGGTGCAGGCGG
TCTAGAGTTATCCCAAGATAAGAACGGGAGCGGGGCTACCCTGTTCGTTG
CGCAAAGCACTTTGAGCATTGTTTCAATTTGGCGCTTGTGGAAGACGGGG
AAAGATGTGAAAGCGCGCTTCGTGCAAAACATCACATACCCGGAATTCGA
AACACCGGGGACGGTAGCACTCGGTGATGGTAGATTAGTTGTGGGTGATC
CCAAGTTCGAGACATATACGCTCACCAATGATTTACCTGATGGTGCAGAG
CTTGCGTTGTTCGGATTCCGTATCCGTAGAGCGCGTCATTCGAAATGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1036206..1037153+

>Gchil4149.t1 ID=Gchil4149.t1|Name=Gchil4149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00004373_pilon:1036206..1037153+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATGCTACTCTTGCAGTGTTCATCCTCTCACTTTTCTATGTAGGCCT
CTCACATAGAATTCGACTGCCGCCAAACACTCAAGTTGAAGGCGTCGCGC
ATGTGGCTGGCTCACTTTTCTTCGCCGGTGATTTTCGCCGAGGTGCCATC
TTGCTCATTGATTTCGCAACAGGTTTTACAACAACAGTAGTACCCGCCAA
TGCCAACCGCCTGGCCACGGGTCTTACCGCACGAAATGGCAGTGTTTTCG
TTGCTGGTGGAGGCATATTCGGTGTTTTTACAAGTCCACCTCGCATGTTC
GTTTACGACATTTTATCTGGCAATACTGTTGCAGCGTGTGATGCTCCATT
AGGAGCGCTTGTGAATGATGTGACTGCAGATGACGACTTTGCTTACTATA
CGGACTCTTTTCTAGGTAAAGTATATATGCTGCGGCTAGCAACACTCCCT
CAATGTGACTTAAGCGTACTTTCCTTACCCCCCCAGTTGTTTGCTCCTGG
ACCCCCGTTTCTCACTACAAATGGTATAAGGCGATTTGCATCCGGCTTGG
TGGTCGCAAACTCCAACTTGGGAAGCTTGTTTTTCGTTGATCTTTCCACC
AATTCCACTCAACAAATTACACCAAATGATGCTGTTGTAGGTGCAGGCGG
TCTAGAGTTATCCCAAGATAAGAACGGGAGCGGGGCTACCCTGTTCGTTG
CGCAAAGCACTTTGAGCATTGTTTCAATTTGGCGCTTGTGGAAGACGGGG
AAAGATGTGAAAGCGCGCTTCGTGCAAAACATCACATACCCGGAATTCGA
AACACCGGGGACGGTAGCACTCGGTGATGGTAGATTAGTTGTGGGTGATC
CCAAGTTCGAGACATATACGCTCACCAATGATTTACCTGATGGTGCAGAG
CTTGCGTTGTTCGGATTCCGTATCCGTAGAGCGCGTCATTCGAAATGA