Gchil4147.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4147.t1
Unique NameGchil4147.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:999810..1001244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703579.1
Preferred nameEED
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K11462,ko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000803,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001739,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005700,GO:0005720,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006338,GO:0006342,GO:0006349,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0008047,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009266,GO:0009409,GO:0009628,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009908,GO:0009960,GO:0009987,GO:0010033,GO:0010154,GO:0010162,GO:0010231,GO:0010431,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010948,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0017053,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0021700,GO:0022414,GO:0022611,GO:0030234,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031519,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034097,GO:0034641,GO:0034708,GO:0034968,GO:0035097,GO:0035098,GO:0036211,GO:0040029,GO:0042054,GO:0042221,GO:0042802,GO:0043076,GO:0043078,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045786,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048096,GO:0048316,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061085,GO:0061087,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070316,GO:0070317,GO:0070734,GO:0070887,GO:0071310,GO:0071345,GO:0071514,GO:0071695,GO:0071704,GO:0071840,GO:0080050,GO:0080090,GO:0090567,GO:0090568,GO:0090696,GO:0097159,GO:0097437,GO:0098772,GO:0099402,GO:0140096,GO:0140110,GO:1901360,GO:1901363,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990234,GO:1990823,GO:1990830,GO:1990837,GO:2000011,GO:2000014,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141,GO:2001252
Evalue2.54e-75
EggNOG OGsKOG1034@1|root,KOG1034@2759|Eukaryota
EC3.6.3.54
Descriptionhistone methylation
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4147Gchil4147Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 999810..1001244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4147.t1Gchil4147.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 999810..1001244 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4147.t1.stop1Gchil4147.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 999810..999812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4147.t1.CDS1Gchil4147.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 999810..999992 -
Gchil4147.t1.CDS2Gchil4147.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1000096..1001244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4147.t1.exon1Gchil4147.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 999810..999992 -
Gchil4147.t1.exon2Gchil4147.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1000096..1001244 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4147.t1.intron1Gchil4147.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 999993..1000095 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4147.t1.start1Gchil4147.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1001242..1001244 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4147.t1 ID=Gchil4147.t1|Name=Gchil4147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=444bp
MPKRNDSRKGTYRFVSSVLEDNSSEPQSTYGVQFAWKPSYYHMQGGGALW
KGSGPPKRLHHGLRGVAEVTMEEDMEEDEVINFVQDAPELEDEGYDRWRN
LFVTCNGNTVRIYEAVHGQKPSLIQFYEDSDPTEQFYCVAWTFNVTGKHE
YWVCAAGRKGIIRVIDVQNFCLRDSLTGHGDAINDIKVHPQDPSLVLTAS
KDESLRLWNLRTGATCAIFCGLKGHRGEVVHVDFSQDGSRFASCGIDNSI
RLWDFYDNEDIVKGIKEAHKAADLGAKDPHIYTDETGTRRKIKVPVSQFP
YFVTRKVHRHYVDCVMWVGELLLSKSVHNRMILWEPEKDRESLASPATEY
TLLEEYVLDVCNVWFIRFAMDRFRRLVACGNDKGMVSVFDLAVTPSKPLC
TITPKDKSRYSAQFVRQCAFSDDGSILLAVDDTSSVVQYERIG*
back to top

spliced messenger RNA

>Gchil4147.t1 ID=Gchil4147.t1|Name=Gchil4147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00004373_pilon:999810..1001244- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAAGAAATGATTCGCGAAAAGGAACATACCGTTTTGTATCTTC
AGTGTTAGAAGACAATTCCAGCGAGCCTCAATCCACCTATGGGGTGCAGT
TCGCGTGGAAACCTTCTTACTACCACATGCAGGGTGGAGGAGCTCTCTGG
AAGGGTAGCGGTCCCCCCAAACGTCTGCATCATGGTTTACGTGGTGTGGC
AGAGGTGACGATGGAAGAGGATATGGAGGAAGATGAGGTTATAAACTTTG
TGCAAGACGCTCCAGAATTAGAGGATGAGGGTTATGACCGATGGCGAAAT
TTGTTTGTTACATGTAATGGAAACACAGTGCGGATTTACGAGGCTGTACA
CGGACAAAAGCCATCGCTCATACAGTTTTATGAAGATTCTGATCCAACCG
AACAGTTTTATTGTGTTGCATGGACGTTTAATGTGACAGGGAAACATGAA
TACTGGGTCTGCGCTGCCGGTCGGAAAGGTATCATAAGAGTCATCGATGT
GCAGAACTTTTGCTTACGTGATTCTCTCACTGGTCACGGAGATGCGATAA
ACGACATCAAGGTTCACCCACAGGACCCATCTCTGGTGCTAACTGCATCA
AAGGATGAATCACTGCGACTATGGAATCTGAGAACAGGGGCAACTTGTGC
AATTTTTTGCGGGCTCAAAGGCCACCGGGGAGAGGTAGTGCATGTTGATT
TCAGTCAAGACGGCAGCAGATTCGCAAGTTGTGGCATAGACAATAGTATC
AGATTATGGGATTTTTATGACAATGAAGACATAGTGAAAGGTATCAAAGA
GGCACACAAGGCAGCTGATCTGGGTGCGAAGGATCCACATATCTACACCG
ATGAGACTGGAACGAGAAGAAAGATCAAGGTCCCAGTAAGCCAGTTTCCG
TATTTTGTCACAAGGAAAGTGCACAGGCATTACGTCGACTGTGTAATGTG
GGTTGGGGAACTGCTTTTGAGCAAATCTGTTCATAATCGAATGATTCTGT
GGGAACCTGAAAAGGATAGAGAGTCTTTGGCTTCTCCTGCAACTGAATAC
ACCCTTCTCGAAGAGTATGTACTCGATGTATGCAATGTATGGTTCATTCG
ATTTGCTATGGACCGTTTCCGGCGACTTGTTGCTTGTGGTAATGACAAAG
GTATGGTTAGCGTGTTTGACCTGGCTGTAACCCCATCTAAACCACTTTGC
ACAATAACTCCCAAGGATAAATCGCGGTACAGTGCGCAATTTGTACGGCA
GTGTGCCTTTTCTGACGACGGCTCTATACTCTTAGCGGTTGATGATACTT
CATCTGTTGTTCAGTACGAAAGAATTGGTTAG
back to top

protein sequence of Gchil4147.t1

>Gchil4147.t1 ID=Gchil4147.t1|Name=Gchil4147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=444bp
MPKRNDSRKGTYRFVSSVLEDNSSEPQSTYGVQFAWKPSYYHMQGGGALW
KGSGPPKRLHHGLRGVAEVTMEEDMEEDEVINFVQDAPELEDEGYDRWRN
LFVTCNGNTVRIYEAVHGQKPSLIQFYEDSDPTEQFYCVAWTFNVTGKHE
YWVCAAGRKGIIRVIDVQNFCLRDSLTGHGDAINDIKVHPQDPSLVLTAS
KDESLRLWNLRTGATCAIFCGLKGHRGEVVHVDFSQDGSRFASCGIDNSI
RLWDFYDNEDIVKGIKEAHKAADLGAKDPHIYTDETGTRRKIKVPVSQFP
YFVTRKVHRHYVDCVMWVGELLLSKSVHNRMILWEPEKDRESLASPATEY
TLLEEYVLDVCNVWFIRFAMDRFRRLVACGNDKGMVSVFDLAVTPSKPLC
TITPKDKSRYSAQFVRQCAFSDDGSILLAVDDTSSVVQYERIG*
back to top

mRNA from alignment at tig00004373_pilon:999810..1001244-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4147.t1 ID=Gchil4147.t1|Name=Gchil4147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1435bp|location=Sequence derived from alignment at tig00004373_pilon:999810..1001244- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAAAGAAATGATTCGCGAAAAGGAACATACCGTTTTGTATCTTC
AGTGTTAGAAGACAATTCCAGCGAGCCTCAATCCACCTATGGGGTGCAGT
TCGCGTGGAAACCTTCTTACTACCACATGCAGGGTGGAGGAGCTCTCTGG
AAGGGTAGCGGTCCCCCCAAACGTCTGCATCATGGTTTACGTGGTGTGGC
AGAGGTGACGATGGAAGAGGATATGGAGGAAGATGAGGTTATAAACTTTG
TGCAAGACGCTCCAGAATTAGAGGATGAGGGTTATGACCGATGGCGAAAT
TTGTTTGTTACATGTAATGGAAACACAGTGCGGATTTACGAGGCTGTACA
CGGACAAAAGCCATCGCTCATACAGTTTTATGAAGATTCTGATCCAACCG
AACAGTTTTATTGTGTTGCATGGACGTTTAATGTGACAGGGAAACATGAA
TACTGGGTCTGCGCTGCCGGTCGGAAAGGTATCATAAGAGTCATCGATGT
GCAGAACTTTTGCTTACGTGATTCTCTCACTGGTCACGGAGATGCGATAA
ACGACATCAAGGTTCACCCACAGGACCCATCTCTGGTGCTAACTGCATCA
AAGGATGAATCACTGCGACTATGGAATCTGAGAACAGGGGCAACTTGTGC
AATTTTTTGCGGGCTCAAAGGCCACCGGGGAGAGGTAGTGCATGTTGATT
TCAGTCAAGACGGCAGCAGATTCGCAAGTTGTGGCATAGACAATAGTATC
AGATTATGGGATTTTTATGACAATGAAGACATAGTGAAAGGTATCAAAGA
GGCACACAAGGCAGCTGATCTGGGTGCGAAGGATCCACATATCTACACCG
ATGAGACTGGAACGAGAAGAAAGATCAAGGTCCCAGTAAGCCAGTTTCCG
TATTTTGTCACAAGGAAAGTGCACAGGCATTACGTCGACTGTGTAATGTG
GGTTGGGGAACTGCTTTTGAGCAAATCTGTTCATAATCGAATGATTCTGT
GGGAACCTGAAAAGGATAGAGAGTCTTTGGCTTCTCCTGCAACTGAATAC
ACCCTTCTCGAAGAGTATGTACTCGATGTATGCAATGTATGGTTCATTCG
ATTTGCTATGGACCGTTTCCGGCGACTTGTTGCTTGTGGTAATGACAAAG
TAAGAAGTATCCTATCTATATATCGATAATCTAACTCTTTTTCTCTGCGT
CTATGCTAACATTCATGAGGTTTCCTGTTTACGAATGCATTTTTTGTGGC
AGGGTATGGTTAGCGTGTTTGACCTGGCTGTAACCCCATCTAAACCACTT
TGCACAATAACTCCCAAGGATAAATCGCGGTACAGTGCGCAATTTGTACG
GCAGTGTGCCTTTTCTGACGACGGCTCTATACTCTTAGCGGTTGATGATA
CTTCATCTGTTGTTCAGTACGAAAGAATTGGTTAG
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:999810..1001244-

>Gchil4147.t1 ID=Gchil4147.t1|Name=Gchil4147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00004373_pilon:999810..1001244- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAAAGAAATGATTCGCGAAAAGGAACATACCGTTTTGTATCTTC
AGTGTTAGAAGACAATTCCAGCGAGCCTCAATCCACCTATGGGGTGCAGT
TCGCGTGGAAACCTTCTTACTACCACATGCAGGGTGGAGGAGCTCTCTGG
AAGGGTAGCGGTCCCCCCAAACGTCTGCATCATGGTTTACGTGGTGTGGC
AGAGGTGACGATGGAAGAGGATATGGAGGAAGATGAGGTTATAAACTTTG
TGCAAGACGCTCCAGAATTAGAGGATGAGGGTTATGACCGATGGCGAAAT
TTGTTTGTTACATGTAATGGAAACACAGTGCGGATTTACGAGGCTGTACA
CGGACAAAAGCCATCGCTCATACAGTTTTATGAAGATTCTGATCCAACCG
AACAGTTTTATTGTGTTGCATGGACGTTTAATGTGACAGGGAAACATGAA
TACTGGGTCTGCGCTGCCGGTCGGAAAGGTATCATAAGAGTCATCGATGT
GCAGAACTTTTGCTTACGTGATTCTCTCACTGGTCACGGAGATGCGATAA
ACGACATCAAGGTTCACCCACAGGACCCATCTCTGGTGCTAACTGCATCA
AAGGATGAATCACTGCGACTATGGAATCTGAGAACAGGGGCAACTTGTGC
AATTTTTTGCGGGCTCAAAGGCCACCGGGGAGAGGTAGTGCATGTTGATT
TCAGTCAAGACGGCAGCAGATTCGCAAGTTGTGGCATAGACAATAGTATC
AGATTATGGGATTTTTATGACAATGAAGACATAGTGAAAGGTATCAAAGA
GGCACACAAGGCAGCTGATCTGGGTGCGAAGGATCCACATATCTACACCG
ATGAGACTGGAACGAGAAGAAAGATCAAGGTCCCAGTAAGCCAGTTTCCG
TATTTTGTCACAAGGAAAGTGCACAGGCATTACGTCGACTGTGTAATGTG
GGTTGGGGAACTGCTTTTGAGCAAATCTGTTCATAATCGAATGATTCTGT
GGGAACCTGAAAAGGATAGAGAGTCTTTGGCTTCTCCTGCAACTGAATAC
ACCCTTCTCGAAGAGTATGTACTCGATGTATGCAATGTATGGTTCATTCG
ATTTGCTATGGACCGTTTCCGGCGACTTGTTGCTTGTGGTAATGACAAAG
GTATGGTTAGCGTGTTTGACCTGGCTGTAACCCCATCTAAACCACTTTGC
ACAATAACTCCCAAGGATAAATCGCGGTACAGTGCGCAATTTGTACGGCA
GTGTGCCTTTTCTGACGACGGCTCTATACTCTTAGCGGTTGATGATACTT
CATCTGTTGTTCAGTACGAAAGAATTGGTTAG
back to top