Gchil4146.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4146.t1
Unique NameGchil4146.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:998499..999206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0STH8
PFAMsRibosomal_L10
Max annot lvl2836|Bacillariophyta
KEGG koko:K02864
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue4.54e-39
EggNOG OGsCOG0244@1|root,2S56U@2759|Eukaryota,2XBWC@2836|Bacillariophyta
DescriptionRibosomal protein L10
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4146Gchil4146Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 998499..999206 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4146.t1.start1Gchil4146.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 998499..998501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4146.t1.CDS1Gchil4146.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 998499..999206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4146.t1.exon1Gchil4146.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 998499..999206 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4146.t1.stop1Gchil4146.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 999204..999206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4146.t1Gchil4146.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 998499..999206 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4146.t1 ID=Gchil4146.t1|Name=Gchil4146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=236bp
MKPSRKVSVVNSSMDNFAFAASLPVGFSRFNVRSPVCPRHSGAATLPYRG
SNVQMVSQTNIAKKSAIVDSVKERISGCQMVFAVSLDGLKVADVYNLRKE
LPEGTTALTVKNSLMRRAIADSEWEVVGDFLQQSNLWFFIKEDMKGSVAT
YEKFAKDAKRTGIKGGGFEGERCDEAGIQAIAALPSKLELITQVAVGVRM
VPTKLGRTIKAIPTKVGKAIKLAVGNEEEEDSPTE*
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spliced messenger RNA

>Gchil4146.t1 ID=Gchil4146.t1|Name=Gchil4146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00004373_pilon:998499..999206+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCTAGTCGAAAAGTTTCCGTGGTTAACTCTTCAATGGATAACTT
TGCCTTTGCAGCCTCTTTGCCCGTGGGATTTTCACGCTTCAATGTGAGAT
CTCCGGTGTGCCCGAGACACTCAGGCGCTGCTACGTTACCGTACAGGGGG
TCTAATGTTCAAATGGTCTCACAAACAAATATCGCCAAGAAATCGGCGAT
TGTAGACTCCGTGAAGGAGCGTATATCTGGGTGTCAAATGGTTTTTGCGG
TCTCGTTAGACGGGCTTAAAGTTGCCGATGTTTATAACTTGAGGAAAGAA
CTGCCAGAAGGAACCACTGCCCTTACAGTGAAGAATTCCTTAATGCGTCG
TGCAATCGCCGATTCAGAATGGGAGGTTGTGGGCGATTTCTTGCAACAGT
CGAATTTATGGTTCTTTATAAAGGAAGACATGAAAGGATCTGTAGCAACT
TATGAAAAATTCGCGAAGGACGCCAAACGGACTGGTATTAAGGGCGGTGG
ATTCGAGGGCGAACGATGTGATGAAGCTGGTATCCAGGCTATTGCGGCTT
TGCCGTCGAAGCTGGAACTCATCACGCAAGTTGCCGTTGGTGTTAGAATG
GTTCCTACGAAACTTGGCAGAACTATCAAGGCCATTCCTACAAAGGTCGG
GAAGGCTATCAAGTTGGCAGTTGGGAATGAAGAGGAAGAGGATTCCCCCA
CAGAATAA
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protein sequence of Gchil4146.t1

>Gchil4146.t1 ID=Gchil4146.t1|Name=Gchil4146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=236bp
MKPSRKVSVVNSSMDNFAFAASLPVGFSRFNVRSPVCPRHSGAATLPYRG
SNVQMVSQTNIAKKSAIVDSVKERISGCQMVFAVSLDGLKVADVYNLRKE
LPEGTTALTVKNSLMRRAIADSEWEVVGDFLQQSNLWFFIKEDMKGSVAT
YEKFAKDAKRTGIKGGGFEGERCDEAGIQAIAALPSKLELITQVAVGVRM
VPTKLGRTIKAIPTKVGKAIKLAVGNEEEEDSPTE*
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mRNA from alignment at tig00004373_pilon:998499..999206+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4146.t1 ID=Gchil4146.t1|Name=Gchil4146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00004373_pilon:998499..999206+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCTAGTCGAAAAGTTTCCGTGGTTAACTCTTCAATGGATAACTT
TGCCTTTGCAGCCTCTTTGCCCGTGGGATTTTCACGCTTCAATGTGAGAT
CTCCGGTGTGCCCGAGACACTCAGGCGCTGCTACGTTACCGTACAGGGGG
TCTAATGTTCAAATGGTCTCACAAACAAATATCGCCAAGAAATCGGCGAT
TGTAGACTCCGTGAAGGAGCGTATATCTGGGTGTCAAATGGTTTTTGCGG
TCTCGTTAGACGGGCTTAAAGTTGCCGATGTTTATAACTTGAGGAAAGAA
CTGCCAGAAGGAACCACTGCCCTTACAGTGAAGAATTCCTTAATGCGTCG
TGCAATCGCCGATTCAGAATGGGAGGTTGTGGGCGATTTCTTGCAACAGT
CGAATTTATGGTTCTTTATAAAGGAAGACATGAAAGGATCTGTAGCAACT
TATGAAAAATTCGCGAAGGACGCCAAACGGACTGGTATTAAGGGCGGTGG
ATTCGAGGGCGAACGATGTGATGAAGCTGGTATCCAGGCTATTGCGGCTT
TGCCGTCGAAGCTGGAACTCATCACGCAAGTTGCCGTTGGTGTTAGAATG
GTTCCTACGAAACTTGGCAGAACTATCAAGGCCATTCCTACAAAGGTCGG
GAAGGCTATCAAGTTGGCAGTTGGGAATGAAGAGGAAGAGGATTCCCCCA
CAGAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:998499..999206+

>Gchil4146.t1 ID=Gchil4146.t1|Name=Gchil4146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00004373_pilon:998499..999206+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCTAGTCGAAAAGTTTCCGTGGTTAACTCTTCAATGGATAACTT
TGCCTTTGCAGCCTCTTTGCCCGTGGGATTTTCACGCTTCAATGTGAGAT
CTCCGGTGTGCCCGAGACACTCAGGCGCTGCTACGTTACCGTACAGGGGG
TCTAATGTTCAAATGGTCTCACAAACAAATATCGCCAAGAAATCGGCGAT
TGTAGACTCCGTGAAGGAGCGTATATCTGGGTGTCAAATGGTTTTTGCGG
TCTCGTTAGACGGGCTTAAAGTTGCCGATGTTTATAACTTGAGGAAAGAA
CTGCCAGAAGGAACCACTGCCCTTACAGTGAAGAATTCCTTAATGCGTCG
TGCAATCGCCGATTCAGAATGGGAGGTTGTGGGCGATTTCTTGCAACAGT
CGAATTTATGGTTCTTTATAAAGGAAGACATGAAAGGATCTGTAGCAACT
TATGAAAAATTCGCGAAGGACGCCAAACGGACTGGTATTAAGGGCGGTGG
ATTCGAGGGCGAACGATGTGATGAAGCTGGTATCCAGGCTATTGCGGCTT
TGCCGTCGAAGCTGGAACTCATCACGCAAGTTGCCGTTGGTGTTAGAATG
GTTCCTACGAAACTTGGCAGAACTATCAAGGCCATTCCTACAAAGGTCGG
GAAGGCTATCAAGTTGGCAGTTGGGAATGAAGAGGAAGAGGATTCCCCCA
CAGAATAA
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