Gchil4145.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4145.t1
Unique NameGchil4145.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:997331..998014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_018146-tr
Preferred nameRPP38
PFAMsRibosomal_L7Ae
Max annot lvl33208|Metazoa
KEGG koko:K14523
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0001650,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue4.37e-06
EggNOG OGsCOG1358@1|root,KOG3387@2759|Eukaryota,39T7V@33154|Opisthokonta,3BG3D@33208|Metazoa,3D34R@33213|Bilateria
EC3.1.26.5
Descriptionribonuclease P activity
COG categoryAJ
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4145Gchil4145Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 997331..998014 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4145.t1.stop1Gchil4145.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 997331..997333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4145.t1.CDS1Gchil4145.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 997331..998014 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4145.t1.exon1Gchil4145.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 997331..998014 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4145.t1.start1Gchil4145.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 998012..998014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4145.t1Gchil4145.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 997331..998014 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4145.t1 ID=Gchil4145.t1|Name=Gchil4145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MGSQRKIQKKVWGSKQVLSSPFALTFPNAKSGVKEAVLSIFAQHFPEPFA
RRESRSLRKAPTHVMHPEGVSPNQEMGEQDRKTKEIRKKPKRVICGLNEV
TRALEKKTMELVIVSRDVTPSFLITHIPILCYVNSANLVVLSGDGTELGH
ILGTRRLLALGILKKVSVDSESTQSEDVLLGKLEPYRSTLEYPWLAAIRG
EKTPNLPDPSMVPHKTKNDILAPLQKK*
back to top

spliced messenger RNA

>Gchil4145.t1 ID=Gchil4145.t1|Name=Gchil4145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004373_pilon:997331..998014- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCTCAGCGTAAGATTCAAAAGAAGGTCTGGGGCTCGAAACAAGT
GCTTTCTTCGCCCTTCGCCCTGACATTCCCCAATGCAAAATCAGGCGTAA
AGGAGGCAGTGTTATCGATATTTGCTCAACATTTTCCAGAACCATTTGCG
AGGCGGGAGTCACGCAGTTTAAGAAAAGCGCCAACCCATGTTATGCATCC
TGAAGGTGTGTCTCCCAATCAAGAGATGGGGGAACAAGATAGAAAAACGA
AAGAGATAAGAAAGAAACCAAAGCGAGTAATATGTGGACTTAACGAAGTG
ACGCGCGCTTTGGAAAAGAAAACGATGGAGCTGGTTATTGTTTCGCGAGA
TGTCACGCCGTCTTTCCTCATAACTCATATTCCAATATTATGCTATGTCA
ATTCGGCAAATTTGGTTGTGCTCTCAGGTGATGGCACGGAGCTTGGTCAT
ATACTAGGTACTCGCCGGCTTTTAGCCCTCGGCATTCTCAAGAAAGTATC
CGTTGACTCTGAAAGCACGCAATCTGAGGATGTACTTCTGGGAAAGTTAG
AGCCATACAGGTCTACGTTAGAATACCCCTGGCTTGCCGCCATCAGAGGA
GAAAAGACACCGAATTTACCGGATCCTTCAATGGTTCCACACAAGACGAA
AAATGATATTCTCGCCCCTCTCCAAAAGAAATGA
back to top

protein sequence of Gchil4145.t1

>Gchil4145.t1 ID=Gchil4145.t1|Name=Gchil4145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MGSQRKIQKKVWGSKQVLSSPFALTFPNAKSGVKEAVLSIFAQHFPEPFA
RRESRSLRKAPTHVMHPEGVSPNQEMGEQDRKTKEIRKKPKRVICGLNEV
TRALEKKTMELVIVSRDVTPSFLITHIPILCYVNSANLVVLSGDGTELGH
ILGTRRLLALGILKKVSVDSESTQSEDVLLGKLEPYRSTLEYPWLAAIRG
EKTPNLPDPSMVPHKTKNDILAPLQKK*
back to top

mRNA from alignment at tig00004373_pilon:997331..998014-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4145.t1 ID=Gchil4145.t1|Name=Gchil4145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004373_pilon:997331..998014- (Gracilaria chilensis NLEC103_M9 male)
ATGGGATCTCAGCGTAAGATTCAAAAGAAGGTCTGGGGCTCGAAACAAGT
GCTTTCTTCGCCCTTCGCCCTGACATTCCCCAATGCAAAATCAGGCGTAA
AGGAGGCAGTGTTATCGATATTTGCTCAACATTTTCCAGAACCATTTGCG
AGGCGGGAGTCACGCAGTTTAAGAAAAGCGCCAACCCATGTTATGCATCC
TGAAGGTGTGTCTCCCAATCAAGAGATGGGGGAACAAGATAGAAAAACGA
AAGAGATAAGAAAGAAACCAAAGCGAGTAATATGTGGACTTAACGAAGTG
ACGCGCGCTTTGGAAAAGAAAACGATGGAGCTGGTTATTGTTTCGCGAGA
TGTCACGCCGTCTTTCCTCATAACTCATATTCCAATATTATGCTATGTCA
ATTCGGCAAATTTGGTTGTGCTCTCAGGTGATGGCACGGAGCTTGGTCAT
ATACTAGGTACTCGCCGGCTTTTAGCCCTCGGCATTCTCAAGAAAGTATC
CGTTGACTCTGAAAGCACGCAATCTGAGGATGTACTTCTGGGAAAGTTAG
AGCCATACAGGTCTACGTTAGAATACCCCTGGCTTGCCGCCATCAGAGGA
GAAAAGACACCGAATTTACCGGATCCTTCAATGGTTCCACACAAGACGAA
AAATGATATTCTCGCCCCTCTCCAAAAGAAATGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:997331..998014-

>Gchil4145.t1 ID=Gchil4145.t1|Name=Gchil4145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004373_pilon:997331..998014- (Gracilaria chilensis NLEC103_M9 male)
ATGGGATCTCAGCGTAAGATTCAAAAGAAGGTCTGGGGCTCGAAACAAGT
GCTTTCTTCGCCCTTCGCCCTGACATTCCCCAATGCAAAATCAGGCGTAA
AGGAGGCAGTGTTATCGATATTTGCTCAACATTTTCCAGAACCATTTGCG
AGGCGGGAGTCACGCAGTTTAAGAAAAGCGCCAACCCATGTTATGCATCC
TGAAGGTGTGTCTCCCAATCAAGAGATGGGGGAACAAGATAGAAAAACGA
AAGAGATAAGAAAGAAACCAAAGCGAGTAATATGTGGACTTAACGAAGTG
ACGCGCGCTTTGGAAAAGAAAACGATGGAGCTGGTTATTGTTTCGCGAGA
TGTCACGCCGTCTTTCCTCATAACTCATATTCCAATATTATGCTATGTCA
ATTCGGCAAATTTGGTTGTGCTCTCAGGTGATGGCACGGAGCTTGGTCAT
ATACTAGGTACTCGCCGGCTTTTAGCCCTCGGCATTCTCAAGAAAGTATC
CGTTGACTCTGAAAGCACGCAATCTGAGGATGTACTTCTGGGAAAGTTAG
AGCCATACAGGTCTACGTTAGAATACCCCTGGCTTGCCGCCATCAGAGGA
GAAAAGACACCGAATTTACCGGATCCTTCAATGGTTCCACACAAGACGAA
AAATGATATTCTCGCCCCTCTCCAAAAGAAATGA
back to top