Gchil4132.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4132.t1
Unique NameGchil4132.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:928466..929028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT472CT
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue9.62e-36
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4132Gchil4132Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 928466..929028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4132.t1Gchil4132.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 928466..929028 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4132.t1.start1Gchil4132.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 928466..928468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4132.t1.CDS1Gchil4132.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 928466..928672 +
Gchil4132.t1.CDS2Gchil4132.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 928765..929028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4132.t1.exon1Gchil4132.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 928466..928672 +
Gchil4132.t1.exon2Gchil4132.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 928765..929028 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4132.t1.intron1Gchil4132.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 928673..928764 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4132.t1.stop1Gchil4132.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 929026..929028 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4132.t1 ID=Gchil4132.t1|Name=Gchil4132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=157bp
MTATISRRRFGQLIAGASVLAVTAVDGELAIAKETKPVFTKSESGISYYD
VKSGNGANPVEGDFVVVDYLAFLSNGKVFDNRKGFVFQMGRRQIIPGLEE
AISTMRPGGERKVVVPANLAYGDKGVCLEKENDCLVPPGETLGYSVTLQR
VAVPPT*
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spliced messenger RNA

>Gchil4132.t1 ID=Gchil4132.t1|Name=Gchil4132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004373_pilon:928466..929028+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGACAATTTCCCGACGCCGATTTGGACAATTAATAGCGGGTGC
TTCTGTCCTGGCAGTGACTGCGGTAGATGGTGAATTAGCAATTGCGAAGG
AAACAAAGCCTGTGTTCACCAAATCAGAAAGCGGTATCAGTTACTACGAC
GTGAAGTCTGGGAATGGTGCCAATCCTGTTGAAGGTGACTTTGTTGTTGT
TGATTACTTGGCCTTTTTGTCTAATGGCAAAGTTTTTGATAATAGGAAAG
GGTTTGTGTTTCAGATGGGACGCAGACAAATAATTCCAGGTTTGGAAGAA
GCTATTTCGACCATGCGACCAGGTGGTGAGAGAAAGGTTGTCGTTCCTGC
AAATCTAGCATACGGTGACAAGGGTGTTTGCCTTGAAAAGGAGAACGACT
GCCTTGTTCCTCCCGGAGAAACCCTCGGATATTCAGTTACACTTCAACGA
GTGGCCGTTCCGCCAACCTGA
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protein sequence of Gchil4132.t1

>Gchil4132.t1 ID=Gchil4132.t1|Name=Gchil4132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=157bp
MTATISRRRFGQLIAGASVLAVTAVDGELAIAKETKPVFTKSESGISYYD
VKSGNGANPVEGDFVVVDYLAFLSNGKVFDNRKGFVFQMGRRQIIPGLEE
AISTMRPGGERKVVVPANLAYGDKGVCLEKENDCLVPPGETLGYSVTLQR
VAVPPT*
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mRNA from alignment at tig00004373_pilon:928466..929028+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4132.t1 ID=Gchil4132.t1|Name=Gchil4132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=563bp|location=Sequence derived from alignment at tig00004373_pilon:928466..929028+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGACAATTTCCCGACGCCGATTTGGACAATTAATAGCGGGTGC
TTCTGTCCTGGCAGTGACTGCGGTAGATGGTGAATTAGCAATTGCGAAGG
AAACAAAGCCTGTGTTCACCAAATCAGAAAGCGGTATCAGTTACTACGAC
GTGAAGTCTGGGAATGGTGCCAATCCTGTTGAAGGTGACTTTGTTGTTGT
TGATTACGTACGTTCTACGCATATAAGAGGCGTTTATACCATGAATGACA
AAGGGTTTTATGCAACTCCTTCGAACTGACCCGCACTTGTGACAAGAAGT
TGGCCTTTTTGTCTAATGGCAAAGTTTTTGATAATAGGAAAGGGTTTGTG
TTTCAGATGGGACGCAGACAAATAATTCCAGGTTTGGAAGAAGCTATTTC
GACCATGCGACCAGGTGGTGAGAGAAAGGTTGTCGTTCCTGCAAATCTAG
CATACGGTGACAAGGGTGTTTGCCTTGAAAAGGAGAACGACTGCCTTGTT
CCTCCCGGAGAAACCCTCGGATATTCAGTTACACTTCAACGAGTGGCCGT
TCCGCCAACCTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:928466..929028+

>Gchil4132.t1 ID=Gchil4132.t1|Name=Gchil4132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00004373_pilon:928466..929028+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGACAATTTCCCGACGCCGATTTGGACAATTAATAGCGGGTGC
TTCTGTCCTGGCAGTGACTGCGGTAGATGGTGAATTAGCAATTGCGAAGG
AAACAAAGCCTGTGTTCACCAAATCAGAAAGCGGTATCAGTTACTACGAC
GTGAAGTCTGGGAATGGTGCCAATCCTGTTGAAGGTGACTTTGTTGTTGT
TGATTACTTGGCCTTTTTGTCTAATGGCAAAGTTTTTGATAATAGGAAAG
GGTTTGTGTTTCAGATGGGACGCAGACAAATAATTCCAGGTTTGGAAGAA
GCTATTTCGACCATGCGACCAGGTGGTGAGAGAAAGGTTGTCGTTCCTGC
AAATCTAGCATACGGTGACAAGGGTGTTTGCCTTGAAAAGGAGAACGACT
GCCTTGTTCCTCCCGGAGAAACCCTCGGATATTCAGTTACACTTCAACGA
GTGGCCGTTCCGCCAACCTGA
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