Gchil4119.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4119.t1
Unique NameGchil4119.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:865531..865989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0304925
PFAMsUQ_con
Max annot lvl554915|Amoebozoa
KEGG koko:K06688
KEGG Pathwayko04120,map04120
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010564,GO:0010965,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031625,GO:0032446,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051603,GO:0051726,GO:0051783,GO:0051983,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901990,GO:1902099,GO:1905818
Evalue2.1e-56
EggNOG OGsCOG5078@1|root,KOG0421@2759|Eukaryota,3XFYA@554915|Amoebozoa
EC2.3.2.23
DescriptionUEV domain
COG categoryH
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4119Gchil4119Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 865531..865989 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4119.t1.start1Gchil4119.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 865531..865533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4119.t1.CDS1Gchil4119.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 865531..865989 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4119.t1.exon1Gchil4119.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 865531..865989 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4119.t1.stop1Gchil4119.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 865987..865989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4119.t1Gchil4119.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 865531..865989 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4119.t1 ID=Gchil4119.t1|Name=Gchil4119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=153bp
MAGTAQVTKRLQADLMELMMHPIPGISAFPHADSLLQWKGTIDPSDSSVY
AGMQFRLDLAFPAAYPLTAPTVKFETPIFHPNIDMSGNICLDILKDKWSP
TYNVSTLLLSIQGLLDTPNNDSPLNNQAAQLWNDREKFLKLAKRRYANLP
LS*
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spliced messenger RNA

>Gchil4119.t1 ID=Gchil4119.t1|Name=Gchil4119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00004373_pilon:865531..865989+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGCACCGCGCAGGTTACCAAGCGCCTACAAGCAGACTTGATGGA
GCTCATGATGCACCCCATCCCCGGCATTTCTGCTTTCCCCCACGCTGATA
GCCTCCTGCAGTGGAAGGGCACCATCGACCCGTCCGACTCAAGTGTGTAC
GCTGGAATGCAGTTCAGGCTGGACCTCGCTTTTCCCGCAGCCTATCCGCT
CACGGCACCCACCGTCAAGTTCGAAACGCCTATATTCCACCCCAACATCG
ATATGAGCGGCAACATCTGTTTAGACATTCTCAAGGACAAATGGAGTCCT
ACCTACAACGTTTCCACCCTGTTGCTCTCTATTCAGGGCTTGCTGGATAC
CCCCAACAACGACTCCCCCCTCAACAATCAGGCTGCCCAGCTCTGGAACG
ACCGTGAGAAATTCCTAAAACTCGCCAAGAgaagatacgcaaaccttccg
ctttcttga
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protein sequence of Gchil4119.t1

>Gchil4119.t1 ID=Gchil4119.t1|Name=Gchil4119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=153bp
MAGTAQVTKRLQADLMELMMHPIPGISAFPHADSLLQWKGTIDPSDSSVY
AGMQFRLDLAFPAAYPLTAPTVKFETPIFHPNIDMSGNICLDILKDKWSP
TYNVSTLLLSIQGLLDTPNNDSPLNNQAAQLWNDREKFLKLAKRRYANLP
LS*
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mRNA from alignment at tig00004373_pilon:865531..865989+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4119.t1 ID=Gchil4119.t1|Name=Gchil4119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00004373_pilon:865531..865989+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGCACCGCGCAGGTTACCAAGCGCCTACAAGCAGACTTGATGGA
GCTCATGATGCACCCCATCCCCGGCATTTCTGCTTTCCCCCACGCTGATA
GCCTCCTGCAGTGGAAGGGCACCATCGACCCGTCCGACTCAAGTGTGTAC
GCTGGAATGCAGTTCAGGCTGGACCTCGCTTTTCCCGCAGCCTATCCGCT
CACGGCACCCACCGTCAAGTTCGAAACGCCTATATTCCACCCCAACATCG
ATATGAGCGGCAACATCTGTTTAGACATTCTCAAGGACAAATGGAGTCCT
ACCTACAACGTTTCCACCCTGTTGCTCTCTATTCAGGGCTTGCTGGATAC
CCCCAACAACGACTCCCCCCTCAACAATCAGGCTGCCCAGCTCTGGAACG
ACCGTGAGAAATTCCTAAAACTCGCCAAGAgaagatacgcaaaccttccg
ctttcttga
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Coding sequence (CDS) from alignment at tig00004373_pilon:865531..865989+

>Gchil4119.t1 ID=Gchil4119.t1|Name=Gchil4119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00004373_pilon:865531..865989+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGCACCGCGCAGGTTACCAAGCGCCTACAAGCAGACTTGATGGA
GCTCATGATGCACCCCATCCCCGGCATTTCTGCTTTCCCCCACGCTGATA
GCCTCCTGCAGTGGAAGGGCACCATCGACCCGTCCGACTCAAGTGTGTAC
GCTGGAATGCAGTTCAGGCTGGACCTCGCTTTTCCCGCAGCCTATCCGCT
CACGGCACCCACCGTCAAGTTCGAAACGCCTATATTCCACCCCAACATCG
ATATGAGCGGCAACATCTGTTTAGACATTCTCAAGGACAAATGGAGTCCT
ACCTACAACGTTTCCACCCTGTTGCTCTCTATTCAGGGCTTGCTGGATAC
CCCCAACAACGACTCCCCCCTCAACAATCAGGCTGCCCAGCTCTGGAACG
ACCGTGAGAAATTCCTAAAACTCGCCAAGAgaagatacgcaaaccttccg
ctttcttga
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