Gchil4115.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4115.t1
Unique NameGchil4115.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:858808..859403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008872845.1
Preferred nameFHIT
PFAMsCN_hydrolase,HIT
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00063,RC00409,RC00611
KEGG koko:K01518,ko:K01522,ko:K11206,ko:K13421
KEGG ReactionR00184,R00187,R00965,R00969,R01232,R01870,R02805,R08231
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko05222,ko05223,map00230,map00240,map00983,map01100,map05222,map05223
KEGG ModuleM00051
GOsGO:0000287,GO:0001650,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004551,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009166,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010605,GO:0012501,GO:0015959,GO:0015961,GO:0015962,GO:0015964,GO:0016020,GO:0016151,GO:0016462,GO:0016787,GO:0016788,GO:0016810,GO:0016811,GO:0016817,GO:0016818,GO:0016819,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019899,GO:0023052,GO:0030145,GO:0030162,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0042176,GO:0042177,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043530,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045861,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0047627,GO:0047710,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0055086,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0071704,GO:0071944,GO:0072331,GO:0072332,GO:0072521,GO:0080090,GO:0090304,GO:0090305,GO:0097190,GO:0097193,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901575,GO:1901576,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
Evalue1.56e-46
EggNOG OGsCOG0537@1|root,KOG3379@2759|Eukaryota
EC2.4.2.10,3.6.1.17,3.6.1.29,4.1.1.23
Descriptionbis(5'-adenosyl)-triphosphatase activity
COG categoryFG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4115Gchil4115Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 858808..859403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4115.t1Gchil4115.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 858808..859403 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4115.t1.start1Gchil4115.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 858808..858810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4115.t1.CDS1Gchil4115.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 858808..858913 +
Gchil4115.t1.CDS2Gchil4115.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 859015..859403 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4115.t1.exon1Gchil4115.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 858808..858913 +
Gchil4115.t1.exon2Gchil4115.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 859015..859403 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4115.t1.intron1Gchil4115.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 858914..859014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4115.t1.stop1Gchil4115.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 859401..859403 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4115.t1 ID=Gchil4115.t1|Name=Gchil4115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=165bp
MTSSFYFGPWRCAWSEAFYLSPLSLAMVNTKPVVPGHCLIVTRRVVPRVA
DLTSEELADLWKVACHISKPLERFFEAEALTFTLQDGPVAGQTVPHVHIH
ILPRRIGDFEINNQVYREIEKTDLSRTVRVDAEEHRKARTLDEMAKEART
LRTLFTDSLPIPTE*
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spliced messenger RNA

>Gchil4115.t1 ID=Gchil4115.t1|Name=Gchil4115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00004373_pilon:858808..859403+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCAAGTTTTTACTTTGGTCCTTGGCGCTGTGCTTGGAGCGAAGC
GTTCTATCTGTCCCCGTTATCACTGGCAATGGTGAATACCAAGCCTGTTG
TACCTGGCCACTGTCTCATAGTGACTCGTCGTGTAGTTCCTCGTGTCGCC
GATCTAACTTCTGAGGAACTGGCAGATTTATGGAAAGTGGCATGTCACAT
TTCAAAACCTCTTGAACGATTTTTCGAAGCTGAGGCTTTGACGTTCACAC
TTCAAGATGGCCCTGTTGCAGGCCAGACTGTTCCTCATGTGCACATCCAT
ATTCTGCCACGCCGAATCGGGGATTTTGAAATCAACAATCAAGTCTATCG
TGAGATTGAAAAGACTGATCTGTCGCGGACTGTAAGAGTTGACGCTGAAG
AACATCGGAAGGCACGGACACTCGACGAAATGGCTAAGGAAGCTCGCACT
TTGCGAACCTTGTTTACAGATTCACTTCCCATTCCTACAGAATGA
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protein sequence of Gchil4115.t1

>Gchil4115.t1 ID=Gchil4115.t1|Name=Gchil4115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=165bp
MTSSFYFGPWRCAWSEAFYLSPLSLAMVNTKPVVPGHCLIVTRRVVPRVA
DLTSEELADLWKVACHISKPLERFFEAEALTFTLQDGPVAGQTVPHVHIH
ILPRRIGDFEINNQVYREIEKTDLSRTVRVDAEEHRKARTLDEMAKEART
LRTLFTDSLPIPTE*
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mRNA from alignment at tig00004373_pilon:858808..859403+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4115.t1 ID=Gchil4115.t1|Name=Gchil4115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=596bp|location=Sequence derived from alignment at tig00004373_pilon:858808..859403+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCAAGTTTTTACTTTGGTCCTTGGCGCTGTGCTTGGAGCGAAGC
GTTCTATCTGTCCCCGTTATCACTGGCAATGGTGAATACCAAGCCTGTTG
TACCTGGTAAGCTTTTCGTCCGAAATAAACCGAAAGCACACATGGTGCAA
CCAAGCAACCTTACGCAGCCTTTTAACGAATTTCTAACAATTTGTTCCAT
TCATCAGGCCACTGTCTCATAGTGACTCGTCGTGTAGTTCCTCGTGTCGC
CGATCTAACTTCTGAGGAACTGGCAGATTTATGGAAAGTGGCATGTCACA
TTTCAAAACCTCTTGAACGATTTTTCGAAGCTGAGGCTTTGACGTTCACA
CTTCAAGATGGCCCTGTTGCAGGCCAGACTGTTCCTCATGTGCACATCCA
TATTCTGCCACGCCGAATCGGGGATTTTGAAATCAACAATCAAGTCTATC
GTGAGATTGAAAAGACTGATCTGTCGCGGACTGTAAGAGTTGACGCTGAA
GAACATCGGAAGGCACGGACACTCGACGAAATGGCTAAGGAAGCTCGCAC
TTTGCGAACCTTGTTTACAGATTCACTTCCCATTCCTACAGAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:858808..859403+

>Gchil4115.t1 ID=Gchil4115.t1|Name=Gchil4115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00004373_pilon:858808..859403+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCAAGTTTTTACTTTGGTCCTTGGCGCTGTGCTTGGAGCGAAGC
GTTCTATCTGTCCCCGTTATCACTGGCAATGGTGAATACCAAGCCTGTTG
TACCTGGCCACTGTCTCATAGTGACTCGTCGTGTAGTTCCTCGTGTCGCC
GATCTAACTTCTGAGGAACTGGCAGATTTATGGAAAGTGGCATGTCACAT
TTCAAAACCTCTTGAACGATTTTTCGAAGCTGAGGCTTTGACGTTCACAC
TTCAAGATGGCCCTGTTGCAGGCCAGACTGTTCCTCATGTGCACATCCAT
ATTCTGCCACGCCGAATCGGGGATTTTGAAATCAACAATCAAGTCTATCG
TGAGATTGAAAAGACTGATCTGTCGCGGACTGTAAGAGTTGACGCTGAAG
AACATCGGAAGGCACGGACACTCGACGAAATGGCTAAGGAAGCTCGCACT
TTGCGAACCTTGTTTACAGATTCACTTCCCATTCCTACAGAATGA
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