Gchil4108.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4108.t1
Unique Name	Gchil4108.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:802668..804422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708443.1
PFAMs	HMGL-like,LeuA_dimer
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00470,RC02754
KEGG ko	ko:K01649
KEGG Reaction	R01213
KEGG Pathway	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG Module	M00432
Evalue	3.67e-227
EggNOG OGs	COG0119@1\|root,KOG2367@2759\|Eukaryota
EC	2.3.3.13
Description	Belongs to the alpha-IPM synthase homocitrate synthase family
COG category	E
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4108	Gchil4108	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 802668..804422 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4108.t1.start1	Gchil4108.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 802668..802670 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4108.t1.CDS1	Gchil4108.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 802668..804422 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4108.t1.exon1	Gchil4108.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 802668..804422 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4108.t1.stop1	Gchil4108.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 804420..804422 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4108.t1	Gchil4108.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 802668..804422 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:802668..804422+
coding sequence from alignment at tig00004373_pilon:802668..804422+

mRNA sequence

>Gchil4108.t1 ID=Gchil4108.t1|Name=Gchil4108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp
MVAPAKRECATVRSSTEPCASEAVAEKQKTVHIYDTTLRDGSQGEGISFT
VPDKIKIAQRLDEFGVHYIEGGWPGSNPKDEAFFAQCKGLGHAKLVAFGS
TRYKNSTCEKDRNVGALVRADTPVVTLVGKAWSRQVEVVLEASLEENVAM
ISDTVQFFKLRGKEVMLDAEHFFDGYKADSRYAMRCLRAAVQAGVDVVVL
CDTNGGTLPWEIEEVTAVVASEFASVRIGIHCHNDMELAVSNSIAAVRGG
ASLVQGTVNGFGERSGNANLMSIVPTLELKMGYKCVGEGLAQLTKVSRYV
DEVANQPHVGSRAYVGASSFAHKGGLHVAAVLKDAATYQHIEPELVGNER
RILVSELSGRRNIVTKAKELGLHSGGADAEDVGEWDARAKSVLEQVKELE
NKGFSFEGAEASVELMLRRTRNGYRPPFELMDFSVSTGNKRVVVVQAEQA
VRTAPYNDSVTQASVKLALLGPENGGEVCPTKVCFEVAEGNGPVDAVNAA
LQKCLLPVYAALRAVSVVDYKVRILDNASGTGAITRVVVEFEDASNGKQW
RTVYAHENIIVASVNALMDGFEVAMWEQLPQCIL*

spliced messenger RNA

>Gchil4108.t1 ID=Gchil4108.t1|Name=Gchil4108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00004373_pilon:802668..804422+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGCCGGCCAAACGAGAGTGTGCCACTGTGCGCTCTTCGACGGA
GCCCTGTGCTTCGGAGGCGGTGGCGGAGAAGCAGAAGACAGTGCACATCT
ACGATACGACGCTGAGAGACGGGTCACAGGGCGAGGGAATTTCGTTTACC
GTGCCCGACAAGATCAAAATTGCGCAGCGTCTTGACGAGTTTGGGGTGCA
TTACATCGAGGGAGGGTGGCCGGGGAGTAACCCAAAGGACGAGGCGTTTT
TTGCGCAGTGCAAGGGTCTTGGTCATGCCAAGTTGGTGGCGTTTGGGAGC
ACGCGGTACAAGAACAGCACTTGCGAGAAGGATAGGAACGTGGGTGCTTT
GGTGAGGGCGGACACGCCGGTTGTGACGCTGGTGGGAAAGGCGTGGAGCA
GACAGGTTGAAGTGGTTCTGGAAGCGTCGCTGGAGGAGAATGTGGCGATG
ATTTCGGACACGGTGCAGTTCTTCAAGCTTCGCGGCAAGGAAGTGATGCT
GGATGCGGAACATTTCTTTGACGGGTACAAGGCGGACAGCAGGTACGCAA
TGCGGTGCTTGAGGGCTGCGGTGCAAGCCGGGGTGGACGTGGTAGTGCTG
TGCGATACAAATGGGGGCACGCTGCCGTGGGAGATTGAGGAGGTGACTGC
AGTGGTGGCCAGTGAGTTTGCGTCGGTGCGAATCGGTATACACTGTCACA
ATGACATGGAACTGGCGGTGTCGAACTCGATTGCGGCGGTGCGCGGCGGC
GCCTCGCTGGTGCAAGGGACGGTCAACGGGTTTGGAGAACGCAGCGGAAA
CGCCAACCTGATGAGCATTGTGCCGACGCTGGAGCTGAAGATGGGGTACA
AGTGCGTGGGGGAGGGGCTGGCACAGTTGACAAAGGTGTCAAGATATGTG
GACGAAGTGGCCAACCAGCCGCACGTGGGGAGCCGGGCGTACGTGGGGGC
GTCGAGCTTTGCGCACAAGGGCGGGCTGCATGTGGCGGCGGTGCTGAAGG
ATGCAGCGACGTACCAACATATTGAGCCCGAGCTGGTGGGCAACGAGCGA
CGCATTCTGGTGTCGGAGCTGTCCGGCAGACGAAACATTGTGACCAAGGC
AAAGGAGCTGGGGCTGCACAGCGGCGGGGCGGATGCGGAGGACGTGGGTG
AGTGGGACGCGCGCGCCAAGAGCGTGTTGGAACAGGTAAAGGAGCTGGAG
AACAAGGGCTTCAGCTTCGAGGGCGCGGAAGCAAGCGTGGAGCTGATGCT
ACGACGCACAAGAAACGGGTATCGACCGCCGTTTGAACTGATGGACTTTT
CGGTGTCGACGGGTAACAAGCGCGTGGTGGTGGTGCAAGCGGAACAAGCG
GTGCGAACGGCGCCGTACAACGACTCAGTGACACAGGCGTCGGTGAAACT
GGCGCTGTTGGGTCCCGAGAACGGGGGCGAGGTATGTCCTACCAAGGTGT
GCTTCGAGGTTGCCGAGGGAAACGGTCCGGTAGACGCGGTGAACGCAGCG
TTGCAAAAGTGTTTACTACCGGTATACGCGGCGTTGCGCGCGGTTTCCGT
GGTGGATTACAAGGTTCGCATTCTGGACAACGCGAGCGGGACGGGGGCCA
TCACTCGCGTGGTGGTGGAATTCGAAGACGCGTCCAACGGGAAACAATGG
AGAACGGTGTATGCTCACGAAAATATCATTGTGGCGTCGGTGAACGCGCT
GATGGACGGGTTTGAGGTGGCCATGTGGGAGCAACTGCCGCAATGCATCT
TGTAG

protein sequence of Gchil4108.t1

>Gchil4108.t1 ID=Gchil4108.t1|Name=Gchil4108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=585bp
MVAPAKRECATVRSSTEPCASEAVAEKQKTVHIYDTTLRDGSQGEGISFT
VPDKIKIAQRLDEFGVHYIEGGWPGSNPKDEAFFAQCKGLGHAKLVAFGS
TRYKNSTCEKDRNVGALVRADTPVVTLVGKAWSRQVEVVLEASLEENVAM
ISDTVQFFKLRGKEVMLDAEHFFDGYKADSRYAMRCLRAAVQAGVDVVVL
CDTNGGTLPWEIEEVTAVVASEFASVRIGIHCHNDMELAVSNSIAAVRGG
ASLVQGTVNGFGERSGNANLMSIVPTLELKMGYKCVGEGLAQLTKVSRYV
DEVANQPHVGSRAYVGASSFAHKGGLHVAAVLKDAATYQHIEPELVGNER
RILVSELSGRRNIVTKAKELGLHSGGADAEDVGEWDARAKSVLEQVKELE
NKGFSFEGAEASVELMLRRTRNGYRPPFELMDFSVSTGNKRVVVVQAEQA
VRTAPYNDSVTQASVKLALLGPENGGEVCPTKVCFEVAEGNGPVDAVNAA
LQKCLLPVYAALRAVSVVDYKVRILDNASGTGAITRVVVEFEDASNGKQW
RTVYAHENIIVASVNALMDGFEVAMWEQLPQCIL*

mRNA from alignment at tig00004373_pilon:802668..804422+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4108.t1 ID=Gchil4108.t1|Name=Gchil4108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00004373_pilon:802668..804422+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCGCCGGCCAAACGAGAGTGTGCCACTGTGCGCTCTTCGACGGA
GCCCTGTGCTTCGGAGGCGGTGGCGGAGAAGCAGAAGACAGTGCACATCT
ACGATACGACGCTGAGAGACGGGTCACAGGGCGAGGGAATTTCGTTTACC
GTGCCCGACAAGATCAAAATTGCGCAGCGTCTTGACGAGTTTGGGGTGCA
TTACATCGAGGGAGGGTGGCCGGGGAGTAACCCAAAGGACGAGGCGTTTT
TTGCGCAGTGCAAGGGTCTTGGTCATGCCAAGTTGGTGGCGTTTGGGAGC
ACGCGGTACAAGAACAGCACTTGCGAGAAGGATAGGAACGTGGGTGCTTT
GGTGAGGGCGGACACGCCGGTTGTGACGCTGGTGGGAAAGGCGTGGAGCA
GACAGGTTGAAGTGGTTCTGGAAGCGTCGCTGGAGGAGAATGTGGCGATG
ATTTCGGACACGGTGCAGTTCTTCAAGCTTCGCGGCAAGGAAGTGATGCT
GGATGCGGAACATTTCTTTGACGGGTACAAGGCGGACAGCAGGTACGCAA
TGCGGTGCTTGAGGGCTGCGGTGCAAGCCGGGGTGGACGTGGTAGTGCTG
TGCGATACAAATGGGGGCACGCTGCCGTGGGAGATTGAGGAGGTGACTGC
AGTGGTGGCCAGTGAGTTTGCGTCGGTGCGAATCGGTATACACTGTCACA
ATGACATGGAACTGGCGGTGTCGAACTCGATTGCGGCGGTGCGCGGCGGC
GCCTCGCTGGTGCAAGGGACGGTCAACGGGTTTGGAGAACGCAGCGGAAA
CGCCAACCTGATGAGCATTGTGCCGACGCTGGAGCTGAAGATGGGGTACA
AGTGCGTGGGGGAGGGGCTGGCACAGTTGACAAAGGTGTCAAGATATGTG
GACGAAGTGGCCAACCAGCCGCACGTGGGGAGCCGGGCGTACGTGGGGGC
GTCGAGCTTTGCGCACAAGGGCGGGCTGCATGTGGCGGCGGTGCTGAAGG
ATGCAGCGACGTACCAACATATTGAGCCCGAGCTGGTGGGCAACGAGCGA
CGCATTCTGGTGTCGGAGCTGTCCGGCAGACGAAACATTGTGACCAAGGC
AAAGGAGCTGGGGCTGCACAGCGGCGGGGCGGATGCGGAGGACGTGGGTG
AGTGGGACGCGCGCGCCAAGAGCGTGTTGGAACAGGTAAAGGAGCTGGAG
AACAAGGGCTTCAGCTTCGAGGGCGCGGAAGCAAGCGTGGAGCTGATGCT
ACGACGCACAAGAAACGGGTATCGACCGCCGTTTGAACTGATGGACTTTT
CGGTGTCGACGGGTAACAAGCGCGTGGTGGTGGTGCAAGCGGAACAAGCG
GTGCGAACGGCGCCGTACAACGACTCAGTGACACAGGCGTCGGTGAAACT
GGCGCTGTTGGGTCCCGAGAACGGGGGCGAGGTATGTCCTACCAAGGTGT
GCTTCGAGGTTGCCGAGGGAAACGGTCCGGTAGACGCGGTGAACGCAGCG
TTGCAAAAGTGTTTACTACCGGTATACGCGGCGTTGCGCGCGGTTTCCGT
GGTGGATTACAAGGTTCGCATTCTGGACAACGCGAGCGGGACGGGGGCCA
TCACTCGCGTGGTGGTGGAATTCGAAGACGCGTCCAACGGGAAACAATGG
AGAACGGTGTATGCTCACGAAAATATCATTGTGGCGTCGGTGAACGCGCT
GATGGACGGGTTTGAGGTGGCCATGTGGGAGCAACTGCCGCAATGCATCT
TGTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:802668..804422+

>Gchil4108.t1 ID=Gchil4108.t1|Name=Gchil4108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1755bp|location=Sequence derived from alignment at tig00004373_pilon:802668..804422+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCGCCGGCCAAACGAGAGTGTGCCACTGTGCGCTCTTCGACGGA
GCCCTGTGCTTCGGAGGCGGTGGCGGAGAAGCAGAAGACAGTGCACATCT
ACGATACGACGCTGAGAGACGGGTCACAGGGCGAGGGAATTTCGTTTACC
GTGCCCGACAAGATCAAAATTGCGCAGCGTCTTGACGAGTTTGGGGTGCA
TTACATCGAGGGAGGGTGGCCGGGGAGTAACCCAAAGGACGAGGCGTTTT
TTGCGCAGTGCAAGGGTCTTGGTCATGCCAAGTTGGTGGCGTTTGGGAGC
ACGCGGTACAAGAACAGCACTTGCGAGAAGGATAGGAACGTGGGTGCTTT
GGTGAGGGCGGACACGCCGGTTGTGACGCTGGTGGGAAAGGCGTGGAGCA
GACAGGTTGAAGTGGTTCTGGAAGCGTCGCTGGAGGAGAATGTGGCGATG
ATTTCGGACACGGTGCAGTTCTTCAAGCTTCGCGGCAAGGAAGTGATGCT
GGATGCGGAACATTTCTTTGACGGGTACAAGGCGGACAGCAGGTACGCAA
TGCGGTGCTTGAGGGCTGCGGTGCAAGCCGGGGTGGACGTGGTAGTGCTG
TGCGATACAAATGGGGGCACGCTGCCGTGGGAGATTGAGGAGGTGACTGC
AGTGGTGGCCAGTGAGTTTGCGTCGGTGCGAATCGGTATACACTGTCACA
ATGACATGGAACTGGCGGTGTCGAACTCGATTGCGGCGGTGCGCGGCGGC
GCCTCGCTGGTGCAAGGGACGGTCAACGGGTTTGGAGAACGCAGCGGAAA
CGCCAACCTGATGAGCATTGTGCCGACGCTGGAGCTGAAGATGGGGTACA
AGTGCGTGGGGGAGGGGCTGGCACAGTTGACAAAGGTGTCAAGATATGTG
GACGAAGTGGCCAACCAGCCGCACGTGGGGAGCCGGGCGTACGTGGGGGC
GTCGAGCTTTGCGCACAAGGGCGGGCTGCATGTGGCGGCGGTGCTGAAGG
ATGCAGCGACGTACCAACATATTGAGCCCGAGCTGGTGGGCAACGAGCGA
CGCATTCTGGTGTCGGAGCTGTCCGGCAGACGAAACATTGTGACCAAGGC
AAAGGAGCTGGGGCTGCACAGCGGCGGGGCGGATGCGGAGGACGTGGGTG
AGTGGGACGCGCGCGCCAAGAGCGTGTTGGAACAGGTAAAGGAGCTGGAG
AACAAGGGCTTCAGCTTCGAGGGCGCGGAAGCAAGCGTGGAGCTGATGCT
ACGACGCACAAGAAACGGGTATCGACCGCCGTTTGAACTGATGGACTTTT
CGGTGTCGACGGGTAACAAGCGCGTGGTGGTGGTGCAAGCGGAACAAGCG
GTGCGAACGGCGCCGTACAACGACTCAGTGACACAGGCGTCGGTGAAACT
GGCGCTGTTGGGTCCCGAGAACGGGGGCGAGGTATGTCCTACCAAGGTGT
GCTTCGAGGTTGCCGAGGGAAACGGTCCGGTAGACGCGGTGAACGCAGCG
TTGCAAAAGTGTTTACTACCGGTATACGCGGCGTTGCGCGCGGTTTCCGT
GGTGGATTACAAGGTTCGCATTCTGGACAACGCGAGCGGGACGGGGGCCA
TCACTCGCGTGGTGGTGGAATTCGAAGACGCGTCCAACGGGAAACAATGG
AGAACGGTGTATGCTCACGAAAATATCATTGTGGCGTCGGTGAACGCGCT
GATGGACGGGTTTGAGGTGGCCATGTGGGAGCAACTGCCGCAATGCATCT
TGTAG