Gchil4096.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4096.t1
Unique NameGchil4096.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:694080..694526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog927677.ALVU02000001_gene2972
PFAMsChuX_HutX
Max annot lvl1117|Cyanobacteria
Evalue1.72e-17
EggNOG OGsCOG3721@1|root,COG3721@2|Bacteria,1G5RK@1117|Cyanobacteria
DescriptionPFAM ChuX-like family
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4096Gchil4096Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 694080..694526 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4096.t1.stop1Gchil4096.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 694080..694082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4096.t1.CDS1Gchil4096.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 694080..694526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4096.t1.exon1Gchil4096.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 694080..694526 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4096.t1.start1Gchil4096.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 694524..694526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4096.t1Gchil4096.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 694080..694526 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4096.t1 ID=Gchil4096.t1|Name=Gchil4096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=149bp
MAAPTRTTVADTPKKQFLDRLKALGNMRLIGRNEAVIMESVATFDGLFYA
EVRNGEYANLIDSSINLDMHLLLDGFSGATFETGVSRDSTKSTTYIIRLL
GKDRSNVILSLFLQWDKTPTDISEERTNAWKALKTDYVGDSEQFFFGE*
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spliced messenger RNA

>Gchil4096.t1 ID=Gchil4096.t1|Name=Gchil4096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00004373_pilon:694080..694526- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCCCCACCCGCACGACTGTGGCTGACACGCCGAAGAAGCAATT
CCTTGACCGACTCAAGGCGCTGGGAAACATGCGTCTCATTGGGCGCAATG
AGGCTGTCATAATGGAATCTGTGGCTACCTTTGACGGTTTGTTCTATGCT
GAAGTGCGCAACGGAGAGTATGCGAATTTGATAGATAGTTCTATCAATCT
TGACATGCATCTGCTTTTAGATGGGTTTAGTGGTGCAACGTTTGAGACGG
GCGTGAGTCGAGACTCTACTAAGTCCACAACATATATTATTCGGTTGCTG
GGAAAAGACCGATCCAACGTCATTCTATCCCTCTTCCTACAATGGGATAA
AACACCAACTGACATCTCGGAAGAAAGGACCAACGCTTGGAAGGCACTCA
AAACTGACTATGTCGGTGATTCGGAGCAATTCTTCTTTGGGGAGTAA
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protein sequence of Gchil4096.t1

>Gchil4096.t1 ID=Gchil4096.t1|Name=Gchil4096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=149bp
MAAPTRTTVADTPKKQFLDRLKALGNMRLIGRNEAVIMESVATFDGLFYA
EVRNGEYANLIDSSINLDMHLLLDGFSGATFETGVSRDSTKSTTYIIRLL
GKDRSNVILSLFLQWDKTPTDISEERTNAWKALKTDYVGDSEQFFFGE*
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mRNA from alignment at tig00004373_pilon:694080..694526-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4096.t1 ID=Gchil4096.t1|Name=Gchil4096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00004373_pilon:694080..694526- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCCCCACCCGCACGACTGTGGCTGACACGCCGAAGAAGCAATT
CCTTGACCGACTCAAGGCGCTGGGAAACATGCGTCTCATTGGGCGCAATG
AGGCTGTCATAATGGAATCTGTGGCTACCTTTGACGGTTTGTTCTATGCT
GAAGTGCGCAACGGAGAGTATGCGAATTTGATAGATAGTTCTATCAATCT
TGACATGCATCTGCTTTTAGATGGGTTTAGTGGTGCAACGTTTGAGACGG
GCGTGAGTCGAGACTCTACTAAGTCCACAACATATATTATTCGGTTGCTG
GGAAAAGACCGATCCAACGTCATTCTATCCCTCTTCCTACAATGGGATAA
AACACCAACTGACATCTCGGAAGAAAGGACCAACGCTTGGAAGGCACTCA
AAACTGACTATGTCGGTGATTCGGAGCAATTCTTCTTTGGGGAGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:694080..694526-

>Gchil4096.t1 ID=Gchil4096.t1|Name=Gchil4096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00004373_pilon:694080..694526- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCCCCACCCGCACGACTGTGGCTGACACGCCGAAGAAGCAATT
CCTTGACCGACTCAAGGCGCTGGGAAACATGCGTCTCATTGGGCGCAATG
AGGCTGTCATAATGGAATCTGTGGCTACCTTTGACGGTTTGTTCTATGCT
GAAGTGCGCAACGGAGAGTATGCGAATTTGATAGATAGTTCTATCAATCT
TGACATGCATCTGCTTTTAGATGGGTTTAGTGGTGCAACGTTTGAGACGG
GCGTGAGTCGAGACTCTACTAAGTCCACAACATATATTATTCGGTTGCTG
GGAAAAGACCGATCCAACGTCATTCTATCCCTCTTCCTACAATGGGATAA
AACACCAACTGACATCTCGGAAGAAAGGACCAACGCTTGGAAGGCACTCA
AAACTGACTATGTCGGTGATTCGGAGCAATTCTTCTTTGGGGAGTAA
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